ISPa10
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa |
DNA section
IS Length : 1193 bp
Ends
IR Length : 9/13
IRL : GAAACTCTGAATTTAACTTCGAGAATCTGGTGAAATAGCCAGCCTGGTAG
IRR : GATGGTCTGAAATAGCCCGGTATTTCAGCCTCCTTTCAGTCTTTGCCGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGGCCTGTTG | CCTAAG | GACAGCCAGG | 6 |
DNA sequence
GAAACTCTGAATTTAACTTCGAGAATCTGGTGAAATAGCCAGCCTGGTAGCCAGCGGATGATAGCCCCATGAAGCAGATGACCTTCGCCGATGCCGAGTA
TGCCGGTAAGCGCAAGCAAACCCGCAAGGAACTGTTCCTGAGCGAGATGGATCAGGTGGTGCCCTGGAAGGGCTTGGTGGCCTTGATCGAGCCGCACTAC
CCGAAAGGTGAAGGGGGTCGCCCGGCCTATCCATTGATGGCCATGCTGCGCGTGCACCTGATGCAGAACTGGTTTGGCTACAGCGATCCGGCGATGGAGG
AAGCGCTCTATGAAACGACCATCCTGCGGCAATTCGCCGGTTTGAGCCTGGAGCGTATCCCGGACGAAACCACGATCCTCAATTTCCGTCGTCTGCTGGA
GAAGAACGACCTGGCTGTGGGCATTCTCGGCGTTATCAACGGCTATCTGGGTGATCGCGGCCTGTCGTTGCGCCAGGGCACGATTGTCGATGCCACATTG
ATCCATGCGCCGAGTTCGACCAAGAACCAGGAAGGCAAACGCGACCCAGAGATGCATCAGACCAAGAAAGGCAACCAGTATTACTTTGGTGCCAAGGCAC
ACATCGGCGTCGATGCCGAGTCGGGTCTGGTGCACCACGTCCACGTCACGGCAGCCAATGTCGCTGACGTTACCCAGGTCGACAAGCTGCTGCACGGTGA
AGAGAACATGGTGGCGGCTGATGCCGGTTATACGGGCGTCGAGAAACGTGAGGAGCACAAGGGGCGCAAGGTAATCTGGCAGATCGCGGCTCGGCGCAGC
ACCTACGAAAAGCACGGCAAGAAAAGCGCACTGTACAAAGCATACCGCAGCATCGAGAAAGCCAAAGCACAAACACGCGCGAAGGTCGAACACCCGTTCC
GCGTGATCAAACGCCAGTTTGGTTACACCAAGGTGCGCTTTCGTGGCTTGGCGAAGAACACGGTACAGATGGTGACGTTGTTCGCGCTGTCGAATCTGTG
GATGGCGCGCCGATATTTGTTGGCTGAGACAGGAGAGGTGCGCCTGTAATGTGGGAAATAGCCGCCATGGACTGCCCATTGCGACTAAAAAACAGTAGAA
ATACGGATATTTTGAGCGTTTTGTGAGCAATCCGTATTTTTAAATCGGCAAAGACTGAAAGGAGGCTGAAATACCGGGCTATTTCAGACCATC
TGCCGGTAAGCGCAAGCAAACCCGCAAGGAACTGTTCCTGAGCGAGATGGATCAGGTGGTGCCCTGGAAGGGCTTGGTGGCCTTGATCGAGCCGCACTAC
CCGAAAGGTGAAGGGGGTCGCCCGGCCTATCCATTGATGGCCATGCTGCGCGTGCACCTGATGCAGAACTGGTTTGGCTACAGCGATCCGGCGATGGAGG
AAGCGCTCTATGAAACGACCATCCTGCGGCAATTCGCCGGTTTGAGCCTGGAGCGTATCCCGGACGAAACCACGATCCTCAATTTCCGTCGTCTGCTGGA
GAAGAACGACCTGGCTGTGGGCATTCTCGGCGTTATCAACGGCTATCTGGGTGATCGCGGCCTGTCGTTGCGCCAGGGCACGATTGTCGATGCCACATTG
ATCCATGCGCCGAGTTCGACCAAGAACCAGGAAGGCAAACGCGACCCAGAGATGCATCAGACCAAGAAAGGCAACCAGTATTACTTTGGTGCCAAGGCAC
ACATCGGCGTCGATGCCGAGTCGGGTCTGGTGCACCACGTCCACGTCACGGCAGCCAATGTCGCTGACGTTACCCAGGTCGACAAGCTGCTGCACGGTGA
AGAGAACATGGTGGCGGCTGATGCCGGTTATACGGGCGTCGAGAAACGTGAGGAGCACAAGGGGCGCAAGGTAATCTGGCAGATCGCGGCTCGGCGCAGC
ACCTACGAAAAGCACGGCAAGAAAAGCGCACTGTACAAAGCATACCGCAGCATCGAGAAAGCCAAAGCACAAACACGCGCGAAGGTCGAACACCCGTTCC
GCGTGATCAAACGCCAGTTTGGTTACACCAAGGTGCGCTTTCGTGGCTTGGCGAAGAACACGGTACAGATGGTGACGTTGTTCGCGCTGTCGAATCTGTG
GATGGCGCGCCGATATTTGTTGGCTGAGACAGGAGAGGTGCGCCTGTAATGTGGGAAATAGCCGCCATGGACTGCCCATTGCGACTAAAAAACAGTAGAA
ATACGGATATTTTGAGCGTTTTGTGAGCAATCCGTATTTTTAAATCGGCAAAGACTGAAAGGAGGCTGAAATACCGGGCTATTTCAGACCATC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
972 bp | 323 aa | 78 | 1049 | + | No |
Chemistry : DDE
ORF sequence :
MTFADAEYAGKRKQTRKELFLSEMDQVVPWKGLVALIEPHYPKGEGGRPAYPLMAMLRVHLMQNWFGYSDPAMEEALYETTILRQFAGLSLERIPDETTI
LNFRRLLEKNDLAVGILGVINGYLGDRGLSLRQGTIVDATLIHAPSSTKNQEGKRDPEMHQTKKGNQYYFGAKAHIGVDAESGLVHHVHVTAANVADVTQ
VDKLLHGEENMVAADAGYTGVEKREEHKGRKVIWQIAARRSTYEKHGKKSALYKAYRSIEKAKAQTRAKVEHPFRVIKRQFGYTKVRFRGLAKNTVQMVT
LFALSNLWMARRYLLAETGEVRL
LNFRRLLEKNDLAVGILGVINGYLGDRGLSLRQGTIVDATLIHAPSSTKNQEGKRDPEMHQTKKGNQYYFGAKAHIGVDAESGLVHHVHVTAANVADVTQ
VDKLLHGEENMVAADAGYTGVEKREEHKGRKVIWQIAARRSTYEKHGKKSALYKAYRSIEKAKAQTRAKVEHPFRVIKRQFGYTKVRFRGLAKNTVQMVT
LFALSNLWMARRYLLAETGEVRL
Blast result :
Comments
ISPa10 is 94% aa similar to ISPsy2 and 68% aa similar to ISPa9.
References
1] Ruymi, R. (2002) Direct submission