ISPa10

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Pseudomonas aeruginosa
Pseudomonas aeruginosa
DNA section
IS Length : 1193 bp

Ends


IR Length : 9/13

IRL : GAAACTCTGAATTTAACTTCGAGAATCTGGTGAAATAGCCAGCCTGGTAG
IRR : GATGGTCTGAAATAGCCCGGTATTTCAGCCTCCTTTCAGTCTTTGCCGAT

Insertion site


Left flankDirect repeatRight flankDR Length
CGGCCTGTTGCCTAAGGACAGCCAGG6

DNA sequence

GAAACTCTGAATTTAACTTCGAGAATCTGGTGAAATAGCCAGCCTGGTAGCCAGCGGATGATAGCCCCATGAAGCAGATGACCTTCGCCGATGCCGAGTA
TGCCGGTAAGCGCAAGCAAACCCGCAAGGAACTGTTCCTGAGCGAGATGGATCAGGTGGTGCCCTGGAAGGGCTTGGTGGCCTTGATCGAGCCGCACTAC
CCGAAAGGTGAAGGGGGTCGCCCGGCCTATCCATTGATGGCCATGCTGCGCGTGCACCTGATGCAGAACTGGTTTGGCTACAGCGATCCGGCGATGGAGG
AAGCGCTCTATGAAACGACCATCCTGCGGCAATTCGCCGGTTTGAGCCTGGAGCGTATCCCGGACGAAACCACGATCCTCAATTTCCGTCGTCTGCTGGA
GAAGAACGACCTGGCTGTGGGCATTCTCGGCGTTATCAACGGCTATCTGGGTGATCGCGGCCTGTCGTTGCGCCAGGGCACGATTGTCGATGCCACATTG
ATCCATGCGCCGAGTTCGACCAAGAACCAGGAAGGCAAACGCGACCCAGAGATGCATCAGACCAAGAAAGGCAACCAGTATTACTTTGGTGCCAAGGCAC
ACATCGGCGTCGATGCCGAGTCGGGTCTGGTGCACCACGTCCACGTCACGGCAGCCAATGTCGCTGACGTTACCCAGGTCGACAAGCTGCTGCACGGTGA
AGAGAACATGGTGGCGGCTGATGCCGGTTATACGGGCGTCGAGAAACGTGAGGAGCACAAGGGGCGCAAGGTAATCTGGCAGATCGCGGCTCGGCGCAGC
ACCTACGAAAAGCACGGCAAGAAAAGCGCACTGTACAAAGCATACCGCAGCATCGAGAAAGCCAAAGCACAAACACGCGCGAAGGTCGAACACCCGTTCC
GCGTGATCAAACGCCAGTTTGGTTACACCAAGGTGCGCTTTCGTGGCTTGGCGAAGAACACGGTACAGATGGTGACGTTGTTCGCGCTGTCGAATCTGTG
GATGGCGCGCCGATATTTGTTGGCTGAGACAGGAGAGGTGCGCCTGTAATGTGGGAAATAGCCGCCATGGACTGCCCATTGCGACTAAAAAACAGTAGAA
ATACGGATATTTTGAGCGTTTTGTGAGCAATCCGTATTTTTAAATCGGCAAAGACTGAAAGGAGGCTGAAATACCGGGCTATTTCAGACCATC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
972 bp323 aa781049+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTFADAEYAGKRKQTRKELFLSEMDQVVPWKGLVALIEPHYPKGEGGRPAYPLMAMLRVHLMQNWFGYSDPAMEEALYETTILRQFAGLSLERIPDETTI
LNFRRLLEKNDLAVGILGVINGYLGDRGLSLRQGTIVDATLIHAPSSTKNQEGKRDPEMHQTKKGNQYYFGAKAHIGVDAESGLVHHVHVTAANVADVTQ
VDKLLHGEENMVAADAGYTGVEKREEHKGRKVIWQIAARRSTYEKHGKKSALYKAYRSIEKAKAQTRAKVEHPFRVIKRQFGYTKVRFRGLAKNTVQMVT
LFALSNLWMARRYLLAETGEVRL

 

Blast result :
Comments
ISPa10 is 94% aa similar to ISPsy2 and 68% aa similar to ISPa9.
References
1] Ruymi, R. (2002) Direct submission