ISPlu11

  • Family IS982
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_005126 ND Photorhabdus luminescens
Photorhabdus luminescens subsp. laumondii TTO1
DNA section
IS Length : 988 bp

Ends


IR Length : 15/17

IRL : ACCCGAATTCTGGATAAGAAATTGACATGAAGCCTGTTCCAGGAGCAATG
IRR : ACCCGAATTCTGCTTAAGCCGTCATTAAAATATCTTTCTCTGAGTAGAAA

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

ACCCGAATTCTGGATAAGAAATTGACATGAAGCCTGTTCCAGGAGCAATGTTTTGGTGCACGCCGAAACAGCTCCGGGGAGGAACAGGCTATGAACAAGT
TAGTTGAAATTTTCTGCGATGTCGATGATTTTTGCCGCTTCTTCATTCCTCAATGGGAATTATTTTGTTTCGAAAAAGGGTACCGCCAGCGTCATCGGCA
AGGCCATATGCACCCCAGTGAAATCATGACTATTTTGATCCTTTTTCATATGGCGCATTACCGTGATTTTAAACATTTTTATCTGGAACATATTTGGAAA
TATCACCACAAAGATTTCCCCACCCTGCTCAGTTATACCCGTTTTGTCAGTGTTGCCCCTTCCGTTTTGGTCCCACTATGTAGTTATCTGACTCAATTAA
AAGGAAAACCGACCAAGATTGCTTTTATTGATTCCACGAGTTTGTGCGTCTGTCATAACATCCGTATCCCGCGTCATAAGGTTTTTAAGGGAATAGCCCA
GCGCGGAAAAACATCAATGGGCTGGTTTTACGGCTTCAAATTACACTTGGTTGTTAACCATCAGGGCGAAATTCTCGCGCTAAAAGTGACTCCCGGTAAT
GTGAATGATCGAGAGCCTGTACGCGAATTATCAAAATCGTTAACGGGTTATCTTTACGGTGATAAAGGTTATCTCAGTCAGGAACTGGCCGATGATTTAG
CCAAAATCGGTGTGACTTTCATCACGAAGAAACGCCGTAATATGAAAGCACAAGCGCTGTCTGAGTGGAATAACTTAATGTTAAAAAAGAGATTTATCAT
CGAAACGATTAACGGGCAATTAAAGACCATTTCTCAAATTGAGCACTCGCGCCACCGAAGTATAAAAGGCTTTCTGTTGTGTGTTTTAGGTGGATTGATT
GCTTACAGCCTTAAATTGAAAAAGCCATCACTGAAAATTTTCTACTCAGAGAAAGATATTTTAATGACGGCTTAAGCAGAATTCGGGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
885 bp294 aa91975+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNKLVEIFCDVDDFCRFFIPQWELFCFEKGYRQRHRQGHMHPSEIMTILILFHMAHYRDFKHFYLEHIWKYHHKDFPTLLSYTRFVSVAPSVLVPLCSYL
TQLKGKPTKIAFIDSTSLCVCHNIRIPRHKVFKGIAQRGKTSMGWFYGFKLHLVVNHQGEILALKVTPGNVNDREPVRELSKSLTGYLYGDKGYLSQELA
DDLAKIGVTFITKKRRNMKAQALSEWNNLMLKKRFIIETINGQLKTISQIEHSRHRSIKGFLLCVLGGLIAYSLKLKKPSLKIFYSEKDILMTA

 

Blast result :
Comments
ISPlu11 is 72% aa similar to IS1597.
There are 5 complete and 5 partial copies in the genome.
References
1] Duchaud,E., Rusniok,C., Frangeul,L., Buchrieser,C., Taourit,S., Bocs,S., Boursaux-Eude,C., Chandler,M., Dassa,E., Derose,R.,Derzelle,S., Freyssinet,G., Gaudriault,S., Givaudan,A., Glaser,P.,Medigue,C., Lanois,A., Powell,K., Siguier,P., Wingate,V.,Zouine,M., Boemare,N., Danchin,A. and Kunst,(2003) F.Nat. Biotechnol