ISPlu11
- Family IS982
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_005126 | ND | Photorhabdus luminescens | Photorhabdus luminescens subsp. laumondii TTO1 |
DNA section
IS Length : 988 bp
Ends
IR Length : 15/17
IRL : ACCCGAATTCTGGATAAGAAATTGACATGAAGCCTGTTCCAGGAGCAATG
IRR : ACCCGAATTCTGCTTAAGCCGTCATTAAAATATCTTTCTCTGAGTAGAAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
ACCCGAATTCTGGATAAGAAATTGACATGAAGCCTGTTCCAGGAGCAATGTTTTGGTGCACGCCGAAACAGCTCCGGGGAGGAACAGGCTATGAACAAGT
TAGTTGAAATTTTCTGCGATGTCGATGATTTTTGCCGCTTCTTCATTCCTCAATGGGAATTATTTTGTTTCGAAAAAGGGTACCGCCAGCGTCATCGGCA
AGGCCATATGCACCCCAGTGAAATCATGACTATTTTGATCCTTTTTCATATGGCGCATTACCGTGATTTTAAACATTTTTATCTGGAACATATTTGGAAA
TATCACCACAAAGATTTCCCCACCCTGCTCAGTTATACCCGTTTTGTCAGTGTTGCCCCTTCCGTTTTGGTCCCACTATGTAGTTATCTGACTCAATTAA
AAGGAAAACCGACCAAGATTGCTTTTATTGATTCCACGAGTTTGTGCGTCTGTCATAACATCCGTATCCCGCGTCATAAGGTTTTTAAGGGAATAGCCCA
GCGCGGAAAAACATCAATGGGCTGGTTTTACGGCTTCAAATTACACTTGGTTGTTAACCATCAGGGCGAAATTCTCGCGCTAAAAGTGACTCCCGGTAAT
GTGAATGATCGAGAGCCTGTACGCGAATTATCAAAATCGTTAACGGGTTATCTTTACGGTGATAAAGGTTATCTCAGTCAGGAACTGGCCGATGATTTAG
CCAAAATCGGTGTGACTTTCATCACGAAGAAACGCCGTAATATGAAAGCACAAGCGCTGTCTGAGTGGAATAACTTAATGTTAAAAAAGAGATTTATCAT
CGAAACGATTAACGGGCAATTAAAGACCATTTCTCAAATTGAGCACTCGCGCCACCGAAGTATAAAAGGCTTTCTGTTGTGTGTTTTAGGTGGATTGATT
GCTTACAGCCTTAAATTGAAAAAGCCATCACTGAAAATTTTCTACTCAGAGAAAGATATTTTAATGACGGCTTAAGCAGAATTCGGGT
TAGTTGAAATTTTCTGCGATGTCGATGATTTTTGCCGCTTCTTCATTCCTCAATGGGAATTATTTTGTTTCGAAAAAGGGTACCGCCAGCGTCATCGGCA
AGGCCATATGCACCCCAGTGAAATCATGACTATTTTGATCCTTTTTCATATGGCGCATTACCGTGATTTTAAACATTTTTATCTGGAACATATTTGGAAA
TATCACCACAAAGATTTCCCCACCCTGCTCAGTTATACCCGTTTTGTCAGTGTTGCCCCTTCCGTTTTGGTCCCACTATGTAGTTATCTGACTCAATTAA
AAGGAAAACCGACCAAGATTGCTTTTATTGATTCCACGAGTTTGTGCGTCTGTCATAACATCCGTATCCCGCGTCATAAGGTTTTTAAGGGAATAGCCCA
GCGCGGAAAAACATCAATGGGCTGGTTTTACGGCTTCAAATTACACTTGGTTGTTAACCATCAGGGCGAAATTCTCGCGCTAAAAGTGACTCCCGGTAAT
GTGAATGATCGAGAGCCTGTACGCGAATTATCAAAATCGTTAACGGGTTATCTTTACGGTGATAAAGGTTATCTCAGTCAGGAACTGGCCGATGATTTAG
CCAAAATCGGTGTGACTTTCATCACGAAGAAACGCCGTAATATGAAAGCACAAGCGCTGTCTGAGTGGAATAACTTAATGTTAAAAAAGAGATTTATCAT
CGAAACGATTAACGGGCAATTAAAGACCATTTCTCAAATTGAGCACTCGCGCCACCGAAGTATAAAAGGCTTTCTGTTGTGTGTTTTAGGTGGATTGATT
GCTTACAGCCTTAAATTGAAAAAGCCATCACTGAAAATTTTCTACTCAGAGAAAGATATTTTAATGACGGCTTAAGCAGAATTCGGGT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
885 bp | 294 aa | 91 | 975 | + | No |
Chemistry : DDE
ORF sequence :
MNKLVEIFCDVDDFCRFFIPQWELFCFEKGYRQRHRQGHMHPSEIMTILILFHMAHYRDFKHFYLEHIWKYHHKDFPTLLSYTRFVSVAPSVLVPLCSYL
TQLKGKPTKIAFIDSTSLCVCHNIRIPRHKVFKGIAQRGKTSMGWFYGFKLHLVVNHQGEILALKVTPGNVNDREPVRELSKSLTGYLYGDKGYLSQELA
DDLAKIGVTFITKKRRNMKAQALSEWNNLMLKKRFIIETINGQLKTISQIEHSRHRSIKGFLLCVLGGLIAYSLKLKKPSLKIFYSEKDILMTA
TQLKGKPTKIAFIDSTSLCVCHNIRIPRHKVFKGIAQRGKTSMGWFYGFKLHLVVNHQGEILALKVTPGNVNDREPVRELSKSLTGYLYGDKGYLSQELA
DDLAKIGVTFITKKRRNMKAQALSEWNNLMLKKRFIIETINGQLKTISQIEHSRHRSIKGFLLCVLGGLIAYSLKLKKPSLKIFYSEKDILMTA
Blast result :
Comments
ISPlu11 is 72% aa similar to IS1597.
There are 5 complete and 5 partial copies in the genome.
There are 5 complete and 5 partial copies in the genome.
References
1] Duchaud,E., Rusniok,C., Frangeul,L., Buchrieser,C., Taourit,S., Bocs,S., Boursaux-Eude,C., Chandler,M., Dassa,E., Derose,R.,Derzelle,S., Freyssinet,G., Gaudriault,S., Givaudan,A., Glaser,P.,Medigue,C., Lanois,A., Powell,K., Siguier,P., Wingate,V.,Zouine,M., Boemare,N., Danchin,A. and Kunst,(2003) F.Nat. Biotechnol