ISPlu10

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_005126 ND Photorhabdus luminescens
Photorhabdus luminescens subsp. laumondii TTO1
DNA section
IS Length : 1149 bp

Ends


IR Length : 22/27

IRL : AATAACTTTTCAAAATAGTAGAACACTTGGAGGGAACTCAGTCCAATTTT
IRR : AATAACTTTTCATAATTATAATACACTCACTCTTTTTATTCTCTGCTATT

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

AATAACTTTTCAAAATAGTAGAACACTTGGAGGGAACTCAGTCCAATTTTTGCAATCTGATCAATTGTAGATAATCCCAAACCACTAAACGGACTGAGTT
ATGCCTATCATAGCACCTATACCCCGCAATGAACGACGCCAGATGAAAAAAATTATCCAGAACACCCGAGATAAAGATTATGCTCGCAGGCTCATGGCCA
TATTGATGCTGCATCGAGGCGAGTCTGTCTCTCTGGTCGCCAAAACCCTTTGCGCCAGTCGTTCTTCTGTCTATCGCTGGATAAACTGGTTGACTTTATA
TGGTCTGGAAGGACTCAAAAGCCTGCCTGTGGGCAGACCCGCTGTCTGGAATTTAATCCCGCTTTATCCTTTACTGTCTTTTTTATTGCAATATTCTCCC
CAGCAATTGGGCTGCCTGCGTTCTCGCTGGAGTCTTGAGTTTTTTATAATTAAAATCAATGAATTATTAAACATAAAATTATCCATCAGTACCTTCTATC
GTTACTTACATAAAATGGGTATCGTGTGGCGAAGGGCAGCCCCGACGCTTAAATTACCCGATCCCGAGTACCATGAAAAAATGGCGAAAATTACCGAGGC
ATTGTCAACGTGTTCAGAAAAACATCCCGTTTTTTATGAAGATGAAGTCGACATCGAGCTGAATCCAAAAATCGGGGCTGACTGGTATTTAAAAGGGCAA
CAGAAACGTATAGTGACACCAGGAAAAAACCAAAAACATTATTTTGCAGGTTGCCTGAATGTTCAAACGGGAAAAGTGACTTATGCTGACGGGTTAAATA
AGAATTCTCAGTTATTTATCAATGTATTGGAAGAACTTGAACGCCAGTATTGTCATGCTGAAACCCTCACTTTGATTTTGGATAATTACAGTATCCATAA
AAGCCGACGGGTCAGAGATTGGCTGGCTTGTCATCCTAAATTTAATCTGTTGTTTTTACCTGTTTATTCACCCTGGCTGAATAAAATTGAGCGTCTGTGG
CAATCCTTACATGAAACGGTGACACGAAATCATGGCTGTCAGTATATGTGGCAATTGCTTGAGAAAGTGAAAACGTTTTTAAATTCATGTCCCTACAGGA
ATAGCAGAGAATAAAAAGAGTGAGTGTATTATAATTATGAAAAGTTATT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1014 bp337 aa1011114+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPIIAPIPRNERRQMKKIIQNTRDKDYARRLMAILMLHRGESVSLVAKTLCASRSSVYRWINWLTLYGLEGLKSLPVGRPAVWNLIPLYPLLSFLLQYSP
QQLGCLRSRWSLEFFIIKINELLNIKLSISTFYRYLHKMGIVWRRAAPTLKLPDPEYHEKMAKITEALSTCSEKHPVFYEDEVDIELNPKIGADWYLKGQ
QKRIVTPGKNQKHYFAGCLNVQTGKVTYADGLNKNSQLFINVLEELERQYCHAETLTLILDNYSIHKSRRVRDWLACHPKFNLLFLPVYSPWLNKIERLW
QSLHETVTRNHGCQYMWQLLEKVKTFLNSCPYRNSRE

 

Blast result :
Comments
ISPlu10 is 74% aa similar to IS630.
There are 11 complete and 8 partial copies in the genome.
References
1] Duchaud,E., Rusniok,C., Frangeul,L., Buchrieser,C., Taourit,S., Bocs,S., Boursaux-Eude,C., Chandler,M., Dassa,E., Derose,R.,Derzelle,S., Freyssinet,G., Gaudriault,S., Givaudan,A., Glaser,P.,Medigue,C., Lanois,A., Powell,K., Siguier,P., Wingate,V.,Zouine,M., Boemare,N., Danchin,A. and Kunst,(2003) F.Nat. Biotechnol