ISPlu9

  • Family IS4
  • Group IS50
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_005126 ND Photorhabdus luminescens
Photorhabdus luminescens subsp. laumondii TTO1
DNA section
IS Length : 1492 bp

Ends


IR Length : 7/8

IRL : CTGTCTTTCCTACACAAATATTTTAACCCGCCCCCGCGTTATTGAACTTT
IRR : CTGTCTCTTGATCAGATCTCCAAATCAACTGATTTAGCCAGCAAATAGCC

Insertion site


Left flankDirect repeatRight flankDR Length
TCAATCCTCTGCCACAACGGGGAAGCCT8

DNA sequence

CTGTCTTTCCTACACAAATATTTTAACCCGCCCCCGCGTTATTGAACTTTTCCCTCATAGATTGATCTCAATAAAAAACACGACTTGAGGTAATCTTTAT
GTTTTCAACCAGCGCCGAACAATGGGCAAATGACACGTTTCAACATGCGGAATTAGGTGATAAACGCCGTACCAACCGCCTGGTGAAAGTGGCCTGTTCG
TTGGCTAACCATATAGGACAATCGCTCGTGCAATCTCTTGACTCTCCTGCCGATGTTGAAGCGGCCTACCGACTGACCCGAAATTCCGCCATTGCGCCTC
AGGCCATCGCCGAAGCCGGATTTACCGCCACCGTCGCTCACGCTCAACGTTATCATTGCCTGTTAGCGCTGGAAGACACGACAACCCTGTCATTTTCCCA
TGCGTCGGTCGCCGATGAACTCGGCTATACCACCTCAAAGGAAAAATCCCGGGGCATGCAGGCACACTCGGTGTTGTTATTTGCGCCTGAAGAACAACAG
GTCGTGGGGTTGATAGAGCAACAGCGCTGGTGTCGAGATGTCAGTGATTATGGCAAAAGCCGACAACGCGATACACGCCCTTATGAAGGGAAAGAGAGTT
ATAAGTGGGAACGGGCCTCACAAGCCGTCGACAGCCGGTTAGGGGAGCAGATGGCCAACGTGATTTCTGTCTGTGACCGTGAAGCCGATATCATCGAATA
TCTGCGTTATAAAACGAGCCAAAAACAACGTTTCGTCATCCGTTCGATGCAAAACCGGCGTATAGAGGAAAGTCAGGATAAACTTTATGACTTTATTAGC
CGGTTACAGAGTGCTGGAGAACGATTAGTTCAGGTCAGACAGAAAGGCGGGCGTCAGGCGCGTGTCGCGCATTGTGATATCAGTTATGCCGAAGTGACGT
TGAAAATCCCCGAAGGAAAAAGCGGTGAGGCGGTGCGGATATTTTATGTCGGTTGCTACGAAAAAGGTCCGGAGGATGGGCTTTGCTGGCATCTTCTGAC
CTCCGAACCCGTCAACAGTCAGGAAGACGCCCATAAAATATTCAGTTATTACGAGCGCCGCTGGCTGATAGAAGAATTTCACAAAGCGTGGAAAACGGGC
GGCACGCAGGTAGAAGCGCTGCGTATGCAAAGCAAAGATAATCTGGAGCGCATGATAGTGCTGCTGGCCTTTATTGCGGTACGAATACACCAGCTGCGTT
TTATGGGTCTGAACAAAGAAGAGGCAGAGAAAGAGAGCTGTGAGACAGTATTAAGCCCCCTGGCGTGGAAATTACTGTGGTCAAAACAAGAAAAACGCCG
TGTGCCGAAAAAAGCCCCGAGTTTGCATTGGGCCTTCATCAATCTGGGAAAACTGGCCGGCTGGTACGATTCCAAACGCACGGGTCGAGTCGGATGGGAA
CGACTTTGGGAAGGCTGGTTTCGGCTGCAAACCCTGATAGACGGCTATTTGCTGGCTAAATCAGTTGATTTGGAGATCTGATCAAGAGACAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1383 bp460 aa991481+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFSTSAEQWANDTFQHAELGDKRRTNRLVKVACSLANHIGQSLVQSLDSPADVEAAYRLTRNSAIAPQAIAEAGFTATVAHAQRYHCLLALEDTTTLSFS
HASVADELGYTTSKEKSRGMQAHSVLLFAPEEQQVVGLIEQQRWCRDVSDYGKSRQRDTRPYEGKESYKWERASQAVDSRLGEQMANVISVCDREADIIE
YLRYKTSQKQRFVIRSMQNRRIEESQDKLYDFISRLQSAGERLVQVRQKGGRQARVAHCDISYAEVTLKIPEGKSGEAVRIFYVGCYEKGPEDGLCWHLL
TSEPVNSQEDAHKIFSYYERRWLIEEFHKAWKTGGTQVEALRMQSKDNLERMIVLLAFIAVRIHQLRFMGLNKEEAEKESCETVLSPLAWKLLWSKQEKR
RVPKKAPSLHWAFINLGKLAGWYDSKRTGRVGWERLWEGWFRLQTLIDGYLLAKSVDLEI

 

Blast result :
Comments
ISPlu9 is 54% aa similar to IS50R.
There are 11 complete copies and one partial copy in the genome.
References
1] Duchaud,E., Rusniok,C., Frangeul,L., Buchrieser,C., Taourit,S., Bocs,S., Boursaux-Eude,C., Chandler,M., Dassa,E., Derose,R.,Derzelle,S., Freyssinet,G., Gaudriault,S., Givaudan,A., Glaser,P.,Medigue,C., Lanois,A., Powell,K., Siguier,P., Wingate,V.,Zouine,M., Boemare,N., Danchin,A. and Kunst, (2003) F.Nat. Biotechnol