ISPlu9
- Family IS4
- Group IS50
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_005126 | ND | Photorhabdus luminescens | Photorhabdus luminescens subsp. laumondii TTO1 |
DNA section
IS Length : 1492 bp
Ends
IR Length : 7/8
IRL : CTGTCTTTCCTACACAAATATTTTAACCCGCCCCCGCGTTATTGAACTTT
IRR : CTGTCTCTTGATCAGATCTCCAAATCAACTGATTTAGCCAGCAAATAGCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCAATCCTCT | GCCACAAC | GGGGAAGCCT | 8 |
DNA sequence
CTGTCTTTCCTACACAAATATTTTAACCCGCCCCCGCGTTATTGAACTTTTCCCTCATAGATTGATCTCAATAAAAAACACGACTTGAGGTAATCTTTAT
GTTTTCAACCAGCGCCGAACAATGGGCAAATGACACGTTTCAACATGCGGAATTAGGTGATAAACGCCGTACCAACCGCCTGGTGAAAGTGGCCTGTTCG
TTGGCTAACCATATAGGACAATCGCTCGTGCAATCTCTTGACTCTCCTGCCGATGTTGAAGCGGCCTACCGACTGACCCGAAATTCCGCCATTGCGCCTC
AGGCCATCGCCGAAGCCGGATTTACCGCCACCGTCGCTCACGCTCAACGTTATCATTGCCTGTTAGCGCTGGAAGACACGACAACCCTGTCATTTTCCCA
TGCGTCGGTCGCCGATGAACTCGGCTATACCACCTCAAAGGAAAAATCCCGGGGCATGCAGGCACACTCGGTGTTGTTATTTGCGCCTGAAGAACAACAG
GTCGTGGGGTTGATAGAGCAACAGCGCTGGTGTCGAGATGTCAGTGATTATGGCAAAAGCCGACAACGCGATACACGCCCTTATGAAGGGAAAGAGAGTT
ATAAGTGGGAACGGGCCTCACAAGCCGTCGACAGCCGGTTAGGGGAGCAGATGGCCAACGTGATTTCTGTCTGTGACCGTGAAGCCGATATCATCGAATA
TCTGCGTTATAAAACGAGCCAAAAACAACGTTTCGTCATCCGTTCGATGCAAAACCGGCGTATAGAGGAAAGTCAGGATAAACTTTATGACTTTATTAGC
CGGTTACAGAGTGCTGGAGAACGATTAGTTCAGGTCAGACAGAAAGGCGGGCGTCAGGCGCGTGTCGCGCATTGTGATATCAGTTATGCCGAAGTGACGT
TGAAAATCCCCGAAGGAAAAAGCGGTGAGGCGGTGCGGATATTTTATGTCGGTTGCTACGAAAAAGGTCCGGAGGATGGGCTTTGCTGGCATCTTCTGAC
CTCCGAACCCGTCAACAGTCAGGAAGACGCCCATAAAATATTCAGTTATTACGAGCGCCGCTGGCTGATAGAAGAATTTCACAAAGCGTGGAAAACGGGC
GGCACGCAGGTAGAAGCGCTGCGTATGCAAAGCAAAGATAATCTGGAGCGCATGATAGTGCTGCTGGCCTTTATTGCGGTACGAATACACCAGCTGCGTT
TTATGGGTCTGAACAAAGAAGAGGCAGAGAAAGAGAGCTGTGAGACAGTATTAAGCCCCCTGGCGTGGAAATTACTGTGGTCAAAACAAGAAAAACGCCG
TGTGCCGAAAAAAGCCCCGAGTTTGCATTGGGCCTTCATCAATCTGGGAAAACTGGCCGGCTGGTACGATTCCAAACGCACGGGTCGAGTCGGATGGGAA
CGACTTTGGGAAGGCTGGTTTCGGCTGCAAACCCTGATAGACGGCTATTTGCTGGCTAAATCAGTTGATTTGGAGATCTGATCAAGAGACAG
GTTTTCAACCAGCGCCGAACAATGGGCAAATGACACGTTTCAACATGCGGAATTAGGTGATAAACGCCGTACCAACCGCCTGGTGAAAGTGGCCTGTTCG
TTGGCTAACCATATAGGACAATCGCTCGTGCAATCTCTTGACTCTCCTGCCGATGTTGAAGCGGCCTACCGACTGACCCGAAATTCCGCCATTGCGCCTC
AGGCCATCGCCGAAGCCGGATTTACCGCCACCGTCGCTCACGCTCAACGTTATCATTGCCTGTTAGCGCTGGAAGACACGACAACCCTGTCATTTTCCCA
TGCGTCGGTCGCCGATGAACTCGGCTATACCACCTCAAAGGAAAAATCCCGGGGCATGCAGGCACACTCGGTGTTGTTATTTGCGCCTGAAGAACAACAG
GTCGTGGGGTTGATAGAGCAACAGCGCTGGTGTCGAGATGTCAGTGATTATGGCAAAAGCCGACAACGCGATACACGCCCTTATGAAGGGAAAGAGAGTT
ATAAGTGGGAACGGGCCTCACAAGCCGTCGACAGCCGGTTAGGGGAGCAGATGGCCAACGTGATTTCTGTCTGTGACCGTGAAGCCGATATCATCGAATA
TCTGCGTTATAAAACGAGCCAAAAACAACGTTTCGTCATCCGTTCGATGCAAAACCGGCGTATAGAGGAAAGTCAGGATAAACTTTATGACTTTATTAGC
CGGTTACAGAGTGCTGGAGAACGATTAGTTCAGGTCAGACAGAAAGGCGGGCGTCAGGCGCGTGTCGCGCATTGTGATATCAGTTATGCCGAAGTGACGT
TGAAAATCCCCGAAGGAAAAAGCGGTGAGGCGGTGCGGATATTTTATGTCGGTTGCTACGAAAAAGGTCCGGAGGATGGGCTTTGCTGGCATCTTCTGAC
CTCCGAACCCGTCAACAGTCAGGAAGACGCCCATAAAATATTCAGTTATTACGAGCGCCGCTGGCTGATAGAAGAATTTCACAAAGCGTGGAAAACGGGC
GGCACGCAGGTAGAAGCGCTGCGTATGCAAAGCAAAGATAATCTGGAGCGCATGATAGTGCTGCTGGCCTTTATTGCGGTACGAATACACCAGCTGCGTT
TTATGGGTCTGAACAAAGAAGAGGCAGAGAAAGAGAGCTGTGAGACAGTATTAAGCCCCCTGGCGTGGAAATTACTGTGGTCAAAACAAGAAAAACGCCG
TGTGCCGAAAAAAGCCCCGAGTTTGCATTGGGCCTTCATCAATCTGGGAAAACTGGCCGGCTGGTACGATTCCAAACGCACGGGTCGAGTCGGATGGGAA
CGACTTTGGGAAGGCTGGTTTCGGCTGCAAACCCTGATAGACGGCTATTTGCTGGCTAAATCAGTTGATTTGGAGATCTGATCAAGAGACAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1383 bp | 460 aa | 99 | 1481 | + | No |
Chemistry : DDE
ORF sequence :
MFSTSAEQWANDTFQHAELGDKRRTNRLVKVACSLANHIGQSLVQSLDSPADVEAAYRLTRNSAIAPQAIAEAGFTATVAHAQRYHCLLALEDTTTLSFS
HASVADELGYTTSKEKSRGMQAHSVLLFAPEEQQVVGLIEQQRWCRDVSDYGKSRQRDTRPYEGKESYKWERASQAVDSRLGEQMANVISVCDREADIIE
YLRYKTSQKQRFVIRSMQNRRIEESQDKLYDFISRLQSAGERLVQVRQKGGRQARVAHCDISYAEVTLKIPEGKSGEAVRIFYVGCYEKGPEDGLCWHLL
TSEPVNSQEDAHKIFSYYERRWLIEEFHKAWKTGGTQVEALRMQSKDNLERMIVLLAFIAVRIHQLRFMGLNKEEAEKESCETVLSPLAWKLLWSKQEKR
RVPKKAPSLHWAFINLGKLAGWYDSKRTGRVGWERLWEGWFRLQTLIDGYLLAKSVDLEI
HASVADELGYTTSKEKSRGMQAHSVLLFAPEEQQVVGLIEQQRWCRDVSDYGKSRQRDTRPYEGKESYKWERASQAVDSRLGEQMANVISVCDREADIIE
YLRYKTSQKQRFVIRSMQNRRIEESQDKLYDFISRLQSAGERLVQVRQKGGRQARVAHCDISYAEVTLKIPEGKSGEAVRIFYVGCYEKGPEDGLCWHLL
TSEPVNSQEDAHKIFSYYERRWLIEEFHKAWKTGGTQVEALRMQSKDNLERMIVLLAFIAVRIHQLRFMGLNKEEAEKESCETVLSPLAWKLLWSKQEKR
RVPKKAPSLHWAFINLGKLAGWYDSKRTGRVGWERLWEGWFRLQTLIDGYLLAKSVDLEI
Blast result :
Comments
ISPlu9 is 54% aa similar to IS50R.
There are 11 complete copies and one partial copy in the genome.
There are 11 complete copies and one partial copy in the genome.
References
1] Duchaud,E., Rusniok,C., Frangeul,L., Buchrieser,C., Taourit,S., Bocs,S., Boursaux-Eude,C., Chandler,M., Dassa,E., Derose,R.,Derzelle,S., Freyssinet,G., Gaudriault,S., Givaudan,A., Glaser,P.,Medigue,C., Lanois,A., Powell,K., Siguier,P., Wingate,V.,Zouine,M., Boemare,N., Danchin,A. and Kunst, (2003) F.Nat. Biotechnol