ISPlu6

  • Family IS982
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_005126 ND Photorhabdus luminescens
Photorhabdus luminescens subsp. laumondii TTO1
DNA section
IS Length : 990 bp

Ends


IR Length : 15/17

IRL : ACCCGAATTCTGGATAAGAAATTGACGAGAAGCCTGTTCCAGGAGCAAAG
IRR : ACCCGAATTCTGCTTAATCCGTCATTGAAAAATCGTCTTCTGAGTAGAAA

Insertion site


Left flankDirect repeatRight flankDR Length
GTCACATAGTTAGTTATCTATG2

DNA sequence

ACCCGAATTCTGGATAAGAAATTGACGAGAAGCCTGTTCCAGGAGCAAAGTTTTGGTGTGCACCAAAAACAGCTCCGAGGGGGGAACAGGCTATGGACAA
CTTAGTTGAAATTTTCTGTGATGTCGATGATTTTTGCCGTTTTTTCATCCCTCAATGGGAACAATTTTGTCTCGATAGCGGGCATCGTTTACGCCGCCGA
CAAGGTCATATGTATCCCAGTGAAATCATGACCATTTTGATCCTTTTTCATATGTCGCATTACCGTGATTTTAAACATTTTTATCTAGAACATATTTGGA
AATATCACCATAAGGATTTTCCAACCTTGCTTAGCTATCCTCGTTTTGTCAGTGTGGCTCCTTCCGTTTTGGTGCCATTATGCAGCTATCTGACTCAATT
AAAAGGGAAACCCACAGGCATTGCTTTTATTGATTCCACCCGTTTGAGTGTCTGCCATAACATTCGCATCCCTCGACATAAGGTCTTTGCGGGGATAGCA
AAGCGCGGAAAAAATTCAATGGGCTGGTTTTACGGTTTCAAATTACACCTGGTTGTCAATCATCAGGGTGAAATTCTCGCGCTTAAAGTGACTCCGGGTA
ATGTGGATGATCGGGAACCTGTTCGTGAATTATCAAAAGAATTAACGGGTTCTCTTTACGGTGACAAAGGTTACCTCAGCCAGGAATTGGCGGACGATTT
AGCTAAAACCGATGTCACTTTCATCACGAAAAAACGGCGTAACATGAAAGCGAGTATGCAAGCTGAGTGGGATAAGATAATGTTAAAAAAGCGTTTTATC
ATTGAAACGATTAATGGGCAATTAAAAACTCTTTCTCAAATAGAGCATTCCCGCCACCGAAGTATAAAAGGCTTTCTGTTGTGCGTTTTAGGTGGATTGA
TTGCTTACTGCCTTAAATTGAAGAAGCCATCACTGAAAGTTTTCTACTCAGAAGACGATTTTTCAATGACGGATTAAGCAGAATTCGGGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
885 bp294 aa93977+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDNLVEIFCDVDDFCRFFIPQWEQFCLDSGHRLRRRQGHMYPSEIMTILILFHMSHYRDFKHFYLEHIWKYHHKDFPTLLSYPRFVSVAPSVLVPLCSYL
TQLKGKPTGIAFIDSTRLSVCHNIRIPRHKVFAGIAKRGKNSMGWFYGFKLHLVVNHQGEILALKVTPGNVDDREPVRELSKELTGSLYGDKGYLSQELA
DDLAKTDVTFITKKRRNMKASMQAEWDKIMLKKRFIIETINGQLKTLSQIEHSRHRSIKGFLLCVLGGLIAYCLKLKKPSLKVFYSEDDFSMTD

 

Blast result :
Comments
ISPlu6 is 66% aa similar to IS195.
There are 12 complete copies and 2 partial copies in the genome.
References
1] Duchaud,E., Rusniok,C., Frangeul,L., Buchrieser,C., Taourit,S., Bocs,S., Boursaux-Eude,C., Chandler,M., Dassa,E., Derose,R.,Derzelle,S., Freyssinet,G., Gaudriault,S., Givaudan,A., Glaser,P.,Medigue,C., Lanois,A., Powell,K., Siguier,P., Wingate,V.,Zouine,M., Boemare,N., Danchin,A. and Kunst,(2003) F.Nat. Biotechnol