ISPlu5
- Family IS200/IS605
- Group IS200
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_005126 | ND | Photorhabdus luminescens | Photorhabdus luminescens subsp. laumondii TTO1 |
DNA section
IS Length : 676 bp
Ends
Left end : CGCTATGCGGGTGGAAATCAAGGGTTATACCAAGAAAAACACCTTTCCGTTACGATATAGATGTTCAAGCTAATATACGTAACTCAAATAAGGAAAGGTG II struct. : No
Right end : ACTTAGCTTGAACGAAGAGAAAGGGCGTCATTTAGGCGCAGTCGGTAATATGCCCTTATAGGGCTAGAGCAAACCACCCGCTATGCGGGTGGTTATGATT II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|
DNA sequence
CGCTATGCGGGTGGAAATCAAGGGTTATACCAAGAAAAACACCTTTCCGTTACGATATAGATGTTCAAGCTAATATACGTAACTCAAATAAGGAAAGGTG
TTTATGGGAATTAAAGCACAAAGCTCAGCACATACAAAGTGGCTGTGCAAATACCACATCGTCTTTTCGCCGAAATACAGACGAAAAGTCATTTTTACCC
GTATCCGTTCGAGGATAGGTGAGATTTTACGAGACCTTTGTCAGTATAAAGGAGTAGAAATCATCGAAGGGCATCTCATGCCAGATCACGTCCATATACT
GGTGAGTATCCCACCTAAAATAAGTGTTTCAAGTTTTATGGGATATCTAAAAGGTAAAAGCGCATTAATGATATTTGATAAGCACGCCAATTTAAAATAC
AAGTTTGGCAATAGGAAGTTTTGGTCAGAAGGATACTACGTGAGTACGGTAGGGCTAAATGAAGCCACAATCCGAAAATACATCAGAGAGCAAGAAAAGT
CAGATTTAATGCAGGATAAGTTAAGTACACGAGAGCATGAAGACCCCTTCAAGGGGTAAGCCAAAGAAGCAAAGACACTTAGCTTGAACGAAGAGAAAGG
GCGTCATTTAGGCGCAGTCGGTAATATGCCCTTATAGGGCTAGAGCAAACCACCCGCTATGCGGGTGGTTATGATT
TTTATGGGAATTAAAGCACAAAGCTCAGCACATACAAAGTGGCTGTGCAAATACCACATCGTCTTTTCGCCGAAATACAGACGAAAAGTCATTTTTACCC
GTATCCGTTCGAGGATAGGTGAGATTTTACGAGACCTTTGTCAGTATAAAGGAGTAGAAATCATCGAAGGGCATCTCATGCCAGATCACGTCCATATACT
GGTGAGTATCCCACCTAAAATAAGTGTTTCAAGTTTTATGGGATATCTAAAAGGTAAAAGCGCATTAATGATATTTGATAAGCACGCCAATTTAAAATAC
AAGTTTGGCAATAGGAAGTTTTGGTCAGAAGGATACTACGTGAGTACGGTAGGGCTAAATGAAGCCACAATCCGAAAATACATCAGAGAGCAAGAAAAGT
CAGATTTAATGCAGGATAAGTTAAGTACACGAGAGCATGAAGACCCCTTCAAGGGGTAAGCCAAAGAAGCAAAGACACTTAGCTTGAACGAAGAGAAAGG
GCGTCATTTAGGCGCAGTCGGTAATATGCCCTTATAGGGCTAGAGCAAACCACCCGCTATGCGGGTGGTTATGATT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
456 bp | 151 aa | 104 | 559 | + | No |
Chemistry : Y1
ORF sequence :
MGIKAQSSAHTKWLCKYHIVFSPKYRRKVIFTRIRSRIGEILRDLCQYKGVEIIEGHLMPDHVHILVSIPPKISVSSFMGYLKGKSALMIFDKHANLKYK
FGNRKFWSEGYYVSTVGLNEATIRKYIREQEKSDLMQDKLSTREHEDPFKG
FGNRKFWSEGYYVSTVGLNEATIRKYIREQEKSDLMQDKLSTREHEDPFKG
Blast result :
Comments
ISPlu5 is 78% aa similar to IS657.
There are 2 complete copies in the genome.
There are 2 complete copies in the genome.
References
1] Duchaud,E., Rusniok,C., Frangeul,L., Buchrieser,C., Taourit,S., Bocs,S., Boursaux-Eude,C., Chandler,M., Dassa,E., Derose,R.,Derzelle,S., Freyssinet,G., Gaudriault,S., Givaudan,A., Glaser,P.,Medigue,C., Lanois,A., Powell,K., Siguier,P., Wingate,V.,Zouine,M., Boemare,N., Danchin,A. and Kunst,(2003) F.Nat. Biotechnol