ISPlu4

  • Family IS1634
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_005126 ND Photorhabdus luminescens
Photorhabdus luminescens subsp. laumondii TTO1
DNA section
IS Length : 1760 bp

Ends


IR Length : 14/16

IRL : CATTCCGCACCGTATTTCTGATTTAAAAATAATGTGATCTTACACAGGTT
IRR : CATTCCGCACCTAATTCAGGAATAAACCGCTTTATATTGTGCACCTAATA

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

CATTCCGCACCGTATTTCTGATTTAAAAATAATGTGATCTTACACAGGTTTTTTGTATTGATGACATCGGTGGGGTTGACGGTAATCGCCAATTTTGATC
TATTACTTTTATTTGCCGGAAAGCGAATATGTCCACACCTATACCTGCCATTAAACGTCTCGATCATCTTGGCCTTATCGCCGCTTTTTGTCATGAAGCC
GGTTTACCCCGCATGATTGATGCCATTATCCCAAAATATTCATCGCATACCGTCTCTCACGGCGACGCTTTTCTGGCGATGATCCTTAACGGGCTGGGGT
TTCACAGCCGGACATTGCACATGTTTTCCGGCTTTTTTCAACATAAGCCGATTGCGCGTTTAATTGGCGCTGACATTGAAGCTGAACACCTTAATGATGA
TGTGCTCGGCCGAACACTGGATGCCTTATATGAAGCGGGGGTGTCGGAAGTTTATCAGGTGCTTGCTGAGCAAGTAGTTGATAAATTAGGGTTAAATCCC
GATTCCGTTCATTTGGATATCACGAGTTTTCATGTCGATGGTGACTATGACAGCGCGTTGGGAGATGACACAAAACGCATTGCACTGGTGCCGGGTTATA
GCCGGGATCACCGGCCTGAACTGAACCAGGTTGTCCTTGAACTGATTTGCGAAAATCAGGCAGGTATCCCTGTCTATATGCAGGCTATGAGCGGGAATAC
GAATGATGCCAAAGCCTTTGCCCAGACGATCAAAACCCATATTCAATGCCTGAAAGCAGCACAAAACAGCCGCTACTTTGTGGCCGATGCCGCCCTTTAT
ACTGAAGCCGCGATCGCTTCGCTTCATCAGCAAAAACAACGATTTATTACGCGTGTTCCCCTGACGATCAAGGAAGCTAAACAGTCTCTCCTGAACGTGA
CAGCGGAGCAATTCAGCCCCATCAGTGAGGGCTATTCAGGCTGCTGGGTGACGTCATCATATGGCGGCGTTCCTCAGCGTTGGTTACTGGTGAACAGTAC
GGCGGCAGAAAAACGTGAAAACCAGACTTTCCGGAAAAACACACTCAGGGAAACAGAAAACGAGTCTAAACAGTTCGACAAACTGGGCAAAAAGCCCTTT
GCCTGCCGGGAGGATGCCTTACAGGCACTGCATGATTTTGAGTCTCAATGCCAGTTTATCGGCATCGCCTCGCCGGAAATTCAGGCGATTACCGCGTATG
CGGGGCGCGGGAAACCCGGCAAGCATCAACCCCCCAAATCGGTTCATTATCAATTAGCCGGTCAGGCTTATACCCGGTTAGACAAGGTGAAGCAGGCCAG
ATTGCGGGTCGGGAGGTTTATTTTAGCGACCAATGAACGGGATGAAGGACGGCTTGATATGGCGGCGTTACTGGCTAATTATAAGGCACAACAAAAGGTG
GAGCGGGGTTTTCGCTTCCTGAAAAGTCCGGAATTCCTGACGTCTGCCATTTTCCTGAAAAAACCGGAGCGGATAGAAGCGCTGTTAATGGTGATGACAT
GTTGTCTCATGGTTTATGCGGCGCTGGAACATAAAATTCGCCATGAATTGAAACAAAATGTGCCGTTTTTCCCCGATATGAAGAACAAACCGACACAATC
CCCCACCGCGCGTTGGGTATTTCTGGCCTTTGAAGGGATCAGCACCTTTGAATTTCAAGAACATAAAATGGTGACAGGAATGCAATCTTACCACCATGAG
CTTTTGAGTTTATTAGGTGCACAATATAAAGCGGTTTATTCCTGAATTAGGTGCGGAATG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1617 bp538 aa1291745+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSTPIPAIKRLDHLGLIAAFCHEAGLPRMIDAIIPKYSSHTVSHGDAFLAMILNGLGFHSRTLHMFSGFFQHKPIARLIGADIEAEHLNDDVLGRTLDAL
YEAGVSEVYQVLAEQVVDKLGLNPDSVHLDITSFHVDGDYDSALGDDTKRIALVPGYSRDHRPELNQVVLELICENQAGIPVYMQAMSGNTNDAKAFAQT
IKTHIQCLKAAQNSRYFVADAALYTEAAIASLHQQKQRFITRVPLTIKEAKQSLLNVTAEQFSPISEGYSGCWVTSSYGGVPQRWLLVNSTAAEKRENQT
FRKNTLRETENESKQFDKLGKKPFACREDALQALHDFESQCQFIGIASPEIQAITAYAGRGKPGKHQPPKSVHYQLAGQAYTRLDKVKQARLRVGRFILA
TNERDEGRLDMAALLANYKAQQKVERGFRFLKSPEFLTSAIFLKKPERIEALLMVMTCCLMVYAALEHKIRHELKQNVPFFPDMKNKPTQSPTARWVFLA
FEGISTFEFQEHKMVTGMQSYHHELLSLLGAQYKAVYS

 

Blast result :
Comments
ISPlu4 is 39% aa similar to IS1634.
There are 7 complete copies and one partial copy in the genome.
References
1] Duchaud,E., Rusniok,C., Frangeul,L., Buchrieser,C., Taourit,S., Bocs,S., Boursaux-Eude,C., Chandler,M., Dassa,E., Derose,R.,Derzelle,S., Freyssinet,G., Gaudriault,S., Givaudan,A., Glaser,P.,Medigue,C., Lanois,A., Powell,K., Siguier,P., Wingate,V.,Zouine,M., Boemare,N., Danchin,A. and Kunst,(2003) F.Nat. Biotechnol