ISPlu3

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_005126 ND Photorhabdus luminescens
Photorhabdus luminescens subsp. laumondii TTO1
DNA section
IS Length : 1097 bp

Ends


IR Length : 14/22

IRL : TACCCGTAATCATTGAAGATGCTTGATTTTATCCGAAATGGAGATCATTA
IRR : TACCCAAGAAACTTCAAGATGCAGTTTTTAGCACCTGAAAATGGTCGTTA

Insertion site


Left flankDirect repeatRight flankDR Length
CTTATAAGCTTATACCCTATAGAT4

DNA sequence

TACCCGTAATCATTGAAGATGCTTGATTTTATCCGAAATGGAGATCATTATCCTCGCTATGAAAATATTTATTACATCAGAACAAAAAATCAAACTTGAA
CGTCTTCACGACACCACTCGTGATGGTCAGGTACGAGACAGAATAAAAGCGATCCTTCTGGCTTCTGAAGGGTGGAGTTCTGTGATGATAGCCCAGGCAT
TGCGACTCCATCAGACCACCGTTGACCGCCATATCAGTGATTACCTTAATCAAGGTAAACTTAAATCTGATAATGGAGGGTCTGATAGTTTGCTTTCCCG
AGAACAAACTGATTTTTTAATCAATCACTTATCTCAACATCTTTTCCATCACACCCATGAAATCGTGGCCTATGTTGCTCAGCTCTGGAATATTACCTTT
AGCATTCCCGGCATGAATAAATGGCTACACCGTCAGGGTTTTTCTTATAAAAAACCTTGTGGCGTCCCTCATAAATTCGACGCAGAAAAACAGCGACAAT
TTATTGAATATTATGAGAATCTTAAAGTCACAGCGAAAGACGAACCCATCCTTTTTCTTGATGCTGTTCACCCGACTCAAGGCACCAAACTCAGTTATGG
CTGGATGCGAAAAGGCGAGAAAAAAACCGTCAAAACAACAGGAAGCCGGACTCGCCTGAATATATTGGGTGCCCTCAACCTGAATGCCATTGGTCGTACG
GTGTTCCAGGAATATCAGACCATCAACGACTACAACATTTGCTGTTTTTTCAATGAAATAAGAAAGTCTTATCCTGACTATCATCAAAAAATTCACCTTA
TTGTGGATGGAGCGGGTTACAACAAAGCTCATCTTGTGAAGGAGTGGGCTTATGTTAGCAATATTGAGTTACATTACCTTCCTCCCTATAGTCCAAATTT
AAACCCGATAGAACGATTATGGAAGGTCATGAATGAACAGGTTCGAAATAACCGTTATTTCGCGGATAAACATGAATTTCGAGACAACGTCTTCAAATTT
TTCACCACAACGCTACCGGATATAGCGGACTCGCTGATGTCTAGAATTAACGACCATTTTCAGGTGCTAAAAACTGCATCTTGAAGTTTCTTGGGTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1026 bp341 aa581083+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKIFITSEQKIKLERLHDTTRDGQVRDRIKAILLASEGWSSVMIAQALRLHQTTVDRHISDYLNQGKLKSDNGGSDSLLSREQTDFLINHLSQHLFHHTH
EIVAYVAQLWNITFSIPGMNKWLHRQGFSYKKPCGVPHKFDAEKQRQFIEYYENLKVTAKDEPILFLDAVHPTQGTKLSYGWMRKGEKKTVKTTGSRTRL
NILGALNLNAIGRTVFQEYQTINDYNICCFFNEIRKSYPDYHQKIHLIVDGAGYNKAHLVKEWAYVSNIELHYLPPYSPNLNPIERLWKVMNEQVRNNRY
FADKHEFRDNVFKFFTTTLPDIADSLMSRINDHFQVLKTAS

 

Blast result :
Comments
It is impossible to determine exactly the IRs of this IS.
ISPlu3 is 48% aa similar to IS642.
There are 28 complete copies and 8 partial copies in the genome.
References
1] Duchaud,E., Rusniok,C., Frangeul,L., Buchrieser,C., Givaudan,A., Taourit,S., Bocs,S., Boursaux-Eude,C., Chandler,M., Charles,J.F., Dassa,E., Derose,R., Derzelle,S., Freyssinet,G., Gaudriault,S., Medigue,C., Lanois,A., Powell,K., Siguier,P., Vincent,R., Wingate,V., Zouine,M., Glaser,P., Boemare,N., Danchin,A. and Kunst,F. (2003) Nat. Biotechnol. 21 (11), 1307-1313