ISPlu3
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_005126 | ND | Photorhabdus luminescens | Photorhabdus luminescens subsp. laumondii TTO1 |
DNA section
IS Length : 1097 bp
Ends
IR Length : 14/22
IRL : TACCCGTAATCATTGAAGATGCTTGATTTTATCCGAAATGGAGATCATTA
IRR : TACCCAAGAAACTTCAAGATGCAGTTTTTAGCACCTGAAAATGGTCGTTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTTATAAGCT | TATA | CCCTATAGAT | 4 |
DNA sequence
TACCCGTAATCATTGAAGATGCTTGATTTTATCCGAAATGGAGATCATTATCCTCGCTATGAAAATATTTATTACATCAGAACAAAAAATCAAACTTGAA
CGTCTTCACGACACCACTCGTGATGGTCAGGTACGAGACAGAATAAAAGCGATCCTTCTGGCTTCTGAAGGGTGGAGTTCTGTGATGATAGCCCAGGCAT
TGCGACTCCATCAGACCACCGTTGACCGCCATATCAGTGATTACCTTAATCAAGGTAAACTTAAATCTGATAATGGAGGGTCTGATAGTTTGCTTTCCCG
AGAACAAACTGATTTTTTAATCAATCACTTATCTCAACATCTTTTCCATCACACCCATGAAATCGTGGCCTATGTTGCTCAGCTCTGGAATATTACCTTT
AGCATTCCCGGCATGAATAAATGGCTACACCGTCAGGGTTTTTCTTATAAAAAACCTTGTGGCGTCCCTCATAAATTCGACGCAGAAAAACAGCGACAAT
TTATTGAATATTATGAGAATCTTAAAGTCACAGCGAAAGACGAACCCATCCTTTTTCTTGATGCTGTTCACCCGACTCAAGGCACCAAACTCAGTTATGG
CTGGATGCGAAAAGGCGAGAAAAAAACCGTCAAAACAACAGGAAGCCGGACTCGCCTGAATATATTGGGTGCCCTCAACCTGAATGCCATTGGTCGTACG
GTGTTCCAGGAATATCAGACCATCAACGACTACAACATTTGCTGTTTTTTCAATGAAATAAGAAAGTCTTATCCTGACTATCATCAAAAAATTCACCTTA
TTGTGGATGGAGCGGGTTACAACAAAGCTCATCTTGTGAAGGAGTGGGCTTATGTTAGCAATATTGAGTTACATTACCTTCCTCCCTATAGTCCAAATTT
AAACCCGATAGAACGATTATGGAAGGTCATGAATGAACAGGTTCGAAATAACCGTTATTTCGCGGATAAACATGAATTTCGAGACAACGTCTTCAAATTT
TTCACCACAACGCTACCGGATATAGCGGACTCGCTGATGTCTAGAATTAACGACCATTTTCAGGTGCTAAAAACTGCATCTTGAAGTTTCTTGGGTA
CGTCTTCACGACACCACTCGTGATGGTCAGGTACGAGACAGAATAAAAGCGATCCTTCTGGCTTCTGAAGGGTGGAGTTCTGTGATGATAGCCCAGGCAT
TGCGACTCCATCAGACCACCGTTGACCGCCATATCAGTGATTACCTTAATCAAGGTAAACTTAAATCTGATAATGGAGGGTCTGATAGTTTGCTTTCCCG
AGAACAAACTGATTTTTTAATCAATCACTTATCTCAACATCTTTTCCATCACACCCATGAAATCGTGGCCTATGTTGCTCAGCTCTGGAATATTACCTTT
AGCATTCCCGGCATGAATAAATGGCTACACCGTCAGGGTTTTTCTTATAAAAAACCTTGTGGCGTCCCTCATAAATTCGACGCAGAAAAACAGCGACAAT
TTATTGAATATTATGAGAATCTTAAAGTCACAGCGAAAGACGAACCCATCCTTTTTCTTGATGCTGTTCACCCGACTCAAGGCACCAAACTCAGTTATGG
CTGGATGCGAAAAGGCGAGAAAAAAACCGTCAAAACAACAGGAAGCCGGACTCGCCTGAATATATTGGGTGCCCTCAACCTGAATGCCATTGGTCGTACG
GTGTTCCAGGAATATCAGACCATCAACGACTACAACATTTGCTGTTTTTTCAATGAAATAAGAAAGTCTTATCCTGACTATCATCAAAAAATTCACCTTA
TTGTGGATGGAGCGGGTTACAACAAAGCTCATCTTGTGAAGGAGTGGGCTTATGTTAGCAATATTGAGTTACATTACCTTCCTCCCTATAGTCCAAATTT
AAACCCGATAGAACGATTATGGAAGGTCATGAATGAACAGGTTCGAAATAACCGTTATTTCGCGGATAAACATGAATTTCGAGACAACGTCTTCAAATTT
TTCACCACAACGCTACCGGATATAGCGGACTCGCTGATGTCTAGAATTAACGACCATTTTCAGGTGCTAAAAACTGCATCTTGAAGTTTCTTGGGTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1026 bp | 341 aa | 58 | 1083 | + | No |
Chemistry : DDE
ORF sequence :
MKIFITSEQKIKLERLHDTTRDGQVRDRIKAILLASEGWSSVMIAQALRLHQTTVDRHISDYLNQGKLKSDNGGSDSLLSREQTDFLINHLSQHLFHHTH
EIVAYVAQLWNITFSIPGMNKWLHRQGFSYKKPCGVPHKFDAEKQRQFIEYYENLKVTAKDEPILFLDAVHPTQGTKLSYGWMRKGEKKTVKTTGSRTRL
NILGALNLNAIGRTVFQEYQTINDYNICCFFNEIRKSYPDYHQKIHLIVDGAGYNKAHLVKEWAYVSNIELHYLPPYSPNLNPIERLWKVMNEQVRNNRY
FADKHEFRDNVFKFFTTTLPDIADSLMSRINDHFQVLKTAS
EIVAYVAQLWNITFSIPGMNKWLHRQGFSYKKPCGVPHKFDAEKQRQFIEYYENLKVTAKDEPILFLDAVHPTQGTKLSYGWMRKGEKKTVKTTGSRTRL
NILGALNLNAIGRTVFQEYQTINDYNICCFFNEIRKSYPDYHQKIHLIVDGAGYNKAHLVKEWAYVSNIELHYLPPYSPNLNPIERLWKVMNEQVRNNRY
FADKHEFRDNVFKFFTTTLPDIADSLMSRINDHFQVLKTAS
Blast result :
Comments
It is impossible to determine exactly the IRs of this IS.
ISPlu3 is 48% aa similar to IS642.
There are 28 complete copies and 8 partial copies in the genome.
ISPlu3 is 48% aa similar to IS642.
There are 28 complete copies and 8 partial copies in the genome.
References
1] Duchaud,E., Rusniok,C., Frangeul,L., Buchrieser,C., Givaudan,A., Taourit,S., Bocs,S., Boursaux-Eude,C., Chandler,M., Charles,J.F., Dassa,E., Derose,R., Derzelle,S., Freyssinet,G., Gaudriault,S., Medigue,C., Lanois,A., Powell,K., Siguier,P., Vincent,R., Wingate,V., Zouine,M., Glaser,P., Boemare,N., Danchin,A. and Kunst,F. (2003) Nat. Biotechnol. 21 (11), 1307-1313