ISPlu2

  • Family IS200/IS605
  • Group IS200
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_005126 ND Photorhabdus luminescens
Photorhabdus luminescens subsp. laumondii TTO1
DNA section
IS Length : 588 bp

Ends


Left end : TCTTCCAAATGAAAGGTTAAAACCACCGGCTTTAGCCGGTCAGCTTTAGCTGCGATACTGTGTTGTACCGGAGGTGCAACATGGATTACAGATATGGCAG II struct. : Yes
Right end : AATTTCAGGATGGATAATTGACGCGTCGTTTAGCCGACGCGTATCCGGACTTTCAGTCCGTTAATCACTAACCCACCTACTTTAGTAGGTGGTTGTTTAG II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
AAAAAGTAAGGTGTTATTATTTTATTTACTTGTACTGTTTTGttag
CTTGAAAGGTGACGGGTATATTTATTTTATTTCTGGCATCACttag
TGCTCCGTGGCCTACCGGCATTTATTTAACAAAACAAAAAATttag
AGTCAATATGGTGTTCATTATTTATGCAACGCGAACAGCCAttag
TAACTGTAGCGGGTGCCTCTTTTATTCACACAGCTTGCCCCttag

DNA sequence

TCTTCCAAATGAAAGGTTAAAACCACCGGCTTTAGCCGGTCAGCTTTAGCTGCGATACTGTGTTGTACCGGAGGTGCAACATGGATTACAGATATGGCAG
CCACACGGTATTTCAGATTGAATACCATTTTGTGTGGGTAACGAAATACAGATACAAAGTGCTGACAGGAGAAGTGGCAAGTCGAGTGCGAGAATTAATC
CGTCAGACATGCGGCTCCTTTGAAATCAGAATATTAAAGGGAGTTGTGAGTCAAGATCACGTGCATATACTCGTCAGCAGTCCCCCAACATTAGCGCCAA
GTGAAATCATGAGAAGGCTGAAGGGGAGAACGGCCAGTAAGCTGTTTGAAGAATTTTCGCATTTGAAAAAGCGGTACTGGGGCCAACATTTTTGGGGGCG
AGGCTATTTTTGTGCAACGGTGGGGCAGTTAACGGAGGAAATGATCAAAAGCTATTTAGAACATCATTTTGAACCCAATCCGAATGATAATTTCAGGATG
GATAATTGACGCGTCGTTTAGCCGACGCGTATCCGGACTTTCAGTCCGTTAATCACTAACCCACCTACTTTAGTAGGTGGTTGTTTAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
429 bp142 aa81509+No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MDYRYGSHTVFQIEYHFVWVTKYRYKVLTGEVASRVRELIRQTCGSFEIRILKGVVSQDHVHILVSSPPTLAPSEIMRRLKGRTASKLFEEFSHLKKRYW
GQHFWGRGYFCATVGQLTEEMIKSYLEHHFEPNPNDNFRMDN

 

Blast result :
Comments
ISPlu2 is 72% aa similar to ISW1.
There are 5 complete copies and 2 partial copies in the genome.
References
1] Duchaud,E., Rusniok,C., Frangeul,L., Buchrieser,C., Taourit,S., Bocs,S., Boursaux-Eude,C., Chandler,M., Dassa,E., Derose,R.,Derzelle,S., Freyssinet,G., Gaudriault,S., Givaudan,A., Glaser,P.,Medigue,C., Lanois,A., Powell,K., Siguier,P., Wingate,V.,Zouine,M., Boemare,N., Danchin,A. and Kunst,(2003) F.Nat. Biotechnol