ISPlu2
- Family IS200/IS605
- Group IS200
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_005126 | ND | Photorhabdus luminescens | Photorhabdus luminescens subsp. laumondii TTO1 |
DNA section
IS Length : 588 bp
Ends
Left end : TCTTCCAAATGAAAGGTTAAAACCACCGGCTTTAGCCGGTCAGCTTTAGCTGCGATACTGTGTTGTACCGGAGGTGCAACATGGATTACAGATATGGCAG II struct. : Yes
Right end : AATTTCAGGATGGATAATTGACGCGTCGTTTAGCCGACGCGTATCCGGACTTTCAGTCCGTTAATCACTAACCCACCTACTTTAGTAGGTGGTTGTTTAG II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
AAAAAGTAAGGTGTTATTATT | TTAT | TTACTTGTACTGTTTTG | ttag |
CTTGAAAGGTGACGGGTATAT | TTAT | TTTATTTCTGGCATCAC | ttag |
TGCTCCGTGGCCTACCGGCAT | TTAT | TTAACAAAACAAAAAAT | ttag |
AGTCAATATGGTGTTCATTAT | TTAT | GCAACGCGAACAGCCA | ttag |
TAACTGTAGCGGGTGCCTCTT | TTAT | TCACACAGCTTGCCCC | ttag |
DNA sequence
TCTTCCAAATGAAAGGTTAAAACCACCGGCTTTAGCCGGTCAGCTTTAGCTGCGATACTGTGTTGTACCGGAGGTGCAACATGGATTACAGATATGGCAG
CCACACGGTATTTCAGATTGAATACCATTTTGTGTGGGTAACGAAATACAGATACAAAGTGCTGACAGGAGAAGTGGCAAGTCGAGTGCGAGAATTAATC
CGTCAGACATGCGGCTCCTTTGAAATCAGAATATTAAAGGGAGTTGTGAGTCAAGATCACGTGCATATACTCGTCAGCAGTCCCCCAACATTAGCGCCAA
GTGAAATCATGAGAAGGCTGAAGGGGAGAACGGCCAGTAAGCTGTTTGAAGAATTTTCGCATTTGAAAAAGCGGTACTGGGGCCAACATTTTTGGGGGCG
AGGCTATTTTTGTGCAACGGTGGGGCAGTTAACGGAGGAAATGATCAAAAGCTATTTAGAACATCATTTTGAACCCAATCCGAATGATAATTTCAGGATG
GATAATTGACGCGTCGTTTAGCCGACGCGTATCCGGACTTTCAGTCCGTTAATCACTAACCCACCTACTTTAGTAGGTGGTTGTTTAG
CCACACGGTATTTCAGATTGAATACCATTTTGTGTGGGTAACGAAATACAGATACAAAGTGCTGACAGGAGAAGTGGCAAGTCGAGTGCGAGAATTAATC
CGTCAGACATGCGGCTCCTTTGAAATCAGAATATTAAAGGGAGTTGTGAGTCAAGATCACGTGCATATACTCGTCAGCAGTCCCCCAACATTAGCGCCAA
GTGAAATCATGAGAAGGCTGAAGGGGAGAACGGCCAGTAAGCTGTTTGAAGAATTTTCGCATTTGAAAAAGCGGTACTGGGGCCAACATTTTTGGGGGCG
AGGCTATTTTTGTGCAACGGTGGGGCAGTTAACGGAGGAAATGATCAAAAGCTATTTAGAACATCATTTTGAACCCAATCCGAATGATAATTTCAGGATG
GATAATTGACGCGTCGTTTAGCCGACGCGTATCCGGACTTTCAGTCCGTTAATCACTAACCCACCTACTTTAGTAGGTGGTTGTTTAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
429 bp | 142 aa | 81 | 509 | + | No |
Chemistry : Y1
ORF sequence :
MDYRYGSHTVFQIEYHFVWVTKYRYKVLTGEVASRVRELIRQTCGSFEIRILKGVVSQDHVHILVSSPPTLAPSEIMRRLKGRTASKLFEEFSHLKKRYW
GQHFWGRGYFCATVGQLTEEMIKSYLEHHFEPNPNDNFRMDN
GQHFWGRGYFCATVGQLTEEMIKSYLEHHFEPNPNDNFRMDN
Blast result :
Comments
ISPlu2 is 72% aa similar to ISW1.
There are 5 complete copies and 2 partial copies in the genome.
There are 5 complete copies and 2 partial copies in the genome.
References
1] Duchaud,E., Rusniok,C., Frangeul,L., Buchrieser,C., Taourit,S., Bocs,S., Boursaux-Eude,C., Chandler,M., Dassa,E., Derose,R.,Derzelle,S., Freyssinet,G., Gaudriault,S., Givaudan,A., Glaser,P.,Medigue,C., Lanois,A., Powell,K., Siguier,P., Wingate,V.,Zouine,M., Boemare,N., Danchin,A. and Kunst,(2003) F.Nat. Biotechnol