ISScl1

  • Family IS5
  • Group IS1031
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY392413 ND Streptomyces clavuligerus
Streptomyces clavuligerus plasmid pSCL2
DNA section
IS Length : 1099 bp

Ends


IR Length : 10

IRL : GAGGGCGTTTATTCAGGTAAAGGGTAGTTCACGACCTATGCGAGTGGACC
IRR : GAGGGCGTTTGATCTAGGCGGATTGCCGCTTATGCTCTAGTAGGTTCCTC

Insertion site


Left flankDirect repeatRight flankDR Length
GCTATGTATCTCAGAGCGGGAGT3

DNA sequence

GAGGGCGTTTATTCAGGTAAAGGGTAGTTCACGACCTATGCGAGTGGACCGCCTTGGTGGGGTGAGTCCGGTATATGTAGAACCCGGCTCAAAGGAGTGA
GGGCTTCGCCGCCCGTCTCATCCGCTTCTGTTCTCGGGAAACCGTCTGGCGTAGAGGTGCCCCAGAACCTCCCGTGAATCAGCGGAGTGGGACGTTCCGG
CAAGCCCGTGCCCACGCTATGCCGTGAGTGAGCGCAAGCCGTACCCAAGCGACCTGTCCGACGCCCGATGGGCTCTGATCGAGCCGACGCTGACGGCTTG
GCGGAATGCCCGGCTCGAACGTCGCCCCACGGGCCAGCCGGCCAAGGTCGAGTTACGCGACGTGTTCAACGCGATCCTCTACTTGAACCGCACCGGAATC
CCCTGGAAGTACCTCCCTCATGACTTCCCGGGCCACGGCACCGTCTACTTCTACTACGCGGCCTGGCGCGACGAGGGAATCTTCGCCCAGCTCAACTACG
ACCTCACCGCACTCGCCCGCGTAAAGGAAGGCCGCAAGCCCGATCCGACCGCCTCCGTCATCGACACCCAGAGCGTCAAAACCTCCACCAACGTACCCCT
GACCAGCCAGGGAACCGACGCCGCGAAGAAGATTTGCGGCAGGAAGCGGGGCATCCTCACCGACACGATCGGCCTCATCCTCGCCGTAACCGTCGCCGGC
GCCGGCCTCTCCGAGAACGCCATGGGAATACGCCTCCTCGACCAGGCGAAAGCCAGCTACCCGACCATCGCGAAAAGCTGGGTCGACACCGGCTTCAAGA
ACGCCGTCATCGAGCACGGCGCCACCCTCGGAATCGACGTCGAAGTAGTCAACCGCAACCCCGAAATACGCGGGTTCCACGTCGTGAAAAGGCGCTGGGT
GGTAGAGCGGAGTATCGGCTGGATCATGCTGCACCGTCGCCTCGCCCGCGACTACGAGACGCTTACCGCCAGCTCCGAAGCCATGATCCGCATCGCCTCG
ATCGACAACCTCGCCAAGCGCATAACGGACGAGACCACACCAACCTGGCGAGGAACCTACTAGAGCATAAGCGGCAATCCGCCTAGATCAAACGCCCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
840 bp279 aa2241063+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSERKPYPSDLSDARWALIEPTLTAWRNARLERRPTGQPAKVELRDVFNAILYLNRTGIPWKYLPHDFPGHGTVYFYYAAWRDEGIFAQLNYDLTALARV
KEGRKPDPTASVIDTQSVKTSTNVPLTSQGTDAAKKICGRKRGILTDTIGLILAVTVAGAGLSENAMGIRLLDQAKASYPTIAKSWVDTGFKNAVIEHGA
TLGIDVEVVNRNPEIRGFHVVKRRWVVERSIGWIMLHRRLARDYETLTASSEAMIRIASIDNLAKRITDETTPTWRGTY

 

Blast result :
Comments
ISScl1 is 97% aa similar to ISSco3.
References
1] Wu,W. and Roy,K.L. (2003) Direct submission GenBank