ISScl1
- Family IS5
- Group IS1031
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY392413 | ND | Streptomyces clavuligerus | Streptomyces clavuligerus plasmid pSCL2 |
DNA section
IS Length : 1099 bp
Ends
IR Length : 10
IRL : GAGGGCGTTTATTCAGGTAAAGGGTAGTTCACGACCTATGCGAGTGGACC
IRR : GAGGGCGTTTGATCTAGGCGGATTGCCGCTTATGCTCTAGTAGGTTCCTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCTATGTATC | TCA | GAGCGGGAGT | 3 |
DNA sequence
GAGGGCGTTTATTCAGGTAAAGGGTAGTTCACGACCTATGCGAGTGGACCGCCTTGGTGGGGTGAGTCCGGTATATGTAGAACCCGGCTCAAAGGAGTGA
GGGCTTCGCCGCCCGTCTCATCCGCTTCTGTTCTCGGGAAACCGTCTGGCGTAGAGGTGCCCCAGAACCTCCCGTGAATCAGCGGAGTGGGACGTTCCGG
CAAGCCCGTGCCCACGCTATGCCGTGAGTGAGCGCAAGCCGTACCCAAGCGACCTGTCCGACGCCCGATGGGCTCTGATCGAGCCGACGCTGACGGCTTG
GCGGAATGCCCGGCTCGAACGTCGCCCCACGGGCCAGCCGGCCAAGGTCGAGTTACGCGACGTGTTCAACGCGATCCTCTACTTGAACCGCACCGGAATC
CCCTGGAAGTACCTCCCTCATGACTTCCCGGGCCACGGCACCGTCTACTTCTACTACGCGGCCTGGCGCGACGAGGGAATCTTCGCCCAGCTCAACTACG
ACCTCACCGCACTCGCCCGCGTAAAGGAAGGCCGCAAGCCCGATCCGACCGCCTCCGTCATCGACACCCAGAGCGTCAAAACCTCCACCAACGTACCCCT
GACCAGCCAGGGAACCGACGCCGCGAAGAAGATTTGCGGCAGGAAGCGGGGCATCCTCACCGACACGATCGGCCTCATCCTCGCCGTAACCGTCGCCGGC
GCCGGCCTCTCCGAGAACGCCATGGGAATACGCCTCCTCGACCAGGCGAAAGCCAGCTACCCGACCATCGCGAAAAGCTGGGTCGACACCGGCTTCAAGA
ACGCCGTCATCGAGCACGGCGCCACCCTCGGAATCGACGTCGAAGTAGTCAACCGCAACCCCGAAATACGCGGGTTCCACGTCGTGAAAAGGCGCTGGGT
GGTAGAGCGGAGTATCGGCTGGATCATGCTGCACCGTCGCCTCGCCCGCGACTACGAGACGCTTACCGCCAGCTCCGAAGCCATGATCCGCATCGCCTCG
ATCGACAACCTCGCCAAGCGCATAACGGACGAGACCACACCAACCTGGCGAGGAACCTACTAGAGCATAAGCGGCAATCCGCCTAGATCAAACGCCCTC
GGGCTTCGCCGCCCGTCTCATCCGCTTCTGTTCTCGGGAAACCGTCTGGCGTAGAGGTGCCCCAGAACCTCCCGTGAATCAGCGGAGTGGGACGTTCCGG
CAAGCCCGTGCCCACGCTATGCCGTGAGTGAGCGCAAGCCGTACCCAAGCGACCTGTCCGACGCCCGATGGGCTCTGATCGAGCCGACGCTGACGGCTTG
GCGGAATGCCCGGCTCGAACGTCGCCCCACGGGCCAGCCGGCCAAGGTCGAGTTACGCGACGTGTTCAACGCGATCCTCTACTTGAACCGCACCGGAATC
CCCTGGAAGTACCTCCCTCATGACTTCCCGGGCCACGGCACCGTCTACTTCTACTACGCGGCCTGGCGCGACGAGGGAATCTTCGCCCAGCTCAACTACG
ACCTCACCGCACTCGCCCGCGTAAAGGAAGGCCGCAAGCCCGATCCGACCGCCTCCGTCATCGACACCCAGAGCGTCAAAACCTCCACCAACGTACCCCT
GACCAGCCAGGGAACCGACGCCGCGAAGAAGATTTGCGGCAGGAAGCGGGGCATCCTCACCGACACGATCGGCCTCATCCTCGCCGTAACCGTCGCCGGC
GCCGGCCTCTCCGAGAACGCCATGGGAATACGCCTCCTCGACCAGGCGAAAGCCAGCTACCCGACCATCGCGAAAAGCTGGGTCGACACCGGCTTCAAGA
ACGCCGTCATCGAGCACGGCGCCACCCTCGGAATCGACGTCGAAGTAGTCAACCGCAACCCCGAAATACGCGGGTTCCACGTCGTGAAAAGGCGCTGGGT
GGTAGAGCGGAGTATCGGCTGGATCATGCTGCACCGTCGCCTCGCCCGCGACTACGAGACGCTTACCGCCAGCTCCGAAGCCATGATCCGCATCGCCTCG
ATCGACAACCTCGCCAAGCGCATAACGGACGAGACCACACCAACCTGGCGAGGAACCTACTAGAGCATAAGCGGCAATCCGCCTAGATCAAACGCCCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
840 bp | 279 aa | 224 | 1063 | + | No |
Chemistry : DDE
ORF sequence :
MSERKPYPSDLSDARWALIEPTLTAWRNARLERRPTGQPAKVELRDVFNAILYLNRTGIPWKYLPHDFPGHGTVYFYYAAWRDEGIFAQLNYDLTALARV
KEGRKPDPTASVIDTQSVKTSTNVPLTSQGTDAAKKICGRKRGILTDTIGLILAVTVAGAGLSENAMGIRLLDQAKASYPTIAKSWVDTGFKNAVIEHGA
TLGIDVEVVNRNPEIRGFHVVKRRWVVERSIGWIMLHRRLARDYETLTASSEAMIRIASIDNLAKRITDETTPTWRGTY
KEGRKPDPTASVIDTQSVKTSTNVPLTSQGTDAAKKICGRKRGILTDTIGLILAVTVAGAGLSENAMGIRLLDQAKASYPTIAKSWVDTGFKNAVIEHGA
TLGIDVEVVNRNPEIRGFHVVKRRWVVERSIGWIMLHRRLARDYETLTASSEAMIRIASIDNLAKRITDETTPTWRGTY
Blast result :
Comments
ISScl1 is 97% aa similar to ISSco3.
References
1] Wu,W. and Roy,K.L. (2003) Direct submission GenBank