ISLxx5

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006087 ND Leifsonia xyli
Leifsonia xyli subsp xyli CTCB07
DNA section
IS Length : 1495 bp

Ends


IR Length : 20/23

IRL : GGGTTCTAGCGGTTGTTGCAACATCTGGAGTTTCTAGGAGTTGCAAGGAC
IRR : GGATTCCAGTGGTTGTTGCAACACGACGATTAGCTGGCGAGTAGTTTAGC

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGGTTCTAGCGGTTGTTGCAACATCTGGAGTTTCTAGGAGTTGCAAGGACCGTGTCCCGTTTAAGGCGCAGTGCGGGGAAGAGGAAGTACACCCAGGCGG
AGCGTGAAGCCTTCTTCGTCATTTTCAAGGAGTCCAGGAGTACGACGATCGCGGCGAGGGAGCTAGGGTTCAACCCCGCGACGTGCGCGCAATGGGTTCG
CAAGGCGGGCCTGGCTAGTCACGGCTACACCGGCGGCGGCATGAGCGCGCACCCATGCAAGGACGAGTACCTGGAGCTGCGGAGCAGCGGGCTCTCGCGC
CGCGAAGCGGTGGGACGAGTCGGAATCAGCCCGAACACGGGATACCTCTGGGACAGTCGAACGGGCGACGCATTTATCCAGATGGTCGCGTGGTCGATTA
CAAAGACAGGGTGCCTGTCGTTGTTGATCCTGTTCAGCGGGCGTCGATGCGTTCGCTCGAAGCCGCACTCCACCCACGATTCCTCTCCCTGCAGGAGCGT
GAGCTGATCCGGGACCTGACCAGGGCCGGCCTTTCGTTGTGTCGGGTCGCGGCCAAGCTTGGTCGCTCGGTGTCGACGATCAGTCGAGAGATTCGCCGGA
ATCAGCTTCCTGGAGAGGGCGGCTACCATCCATACGTGGCGCATCGGAAAGCGGCCAGCCGCCGACCGCGACCGAAAGCCACGAGGCTGGTCCGCAATCC
GCAGCTGCGCAGTTACGTTCAACGGAAGCTGACGCTACGTTGGTCGCCGGAGCAGATCAGCCGGTCGCTGATCCGCGAGTTCCCCGGCGATGCGGAGATG
CGCGTGGCGCACGAGACGATCTATCAAGCCTTCTACGTGCAGGGCCGTGGACAACTCCGCCGCGAGCTCACGATGGTGCTGCGGACCGGCCGGGCCAAGC
GGAAACCGCATCGTTCTGGCGCCGCTCGCAGACATCGTTTCGCGGATCCGATGGTAATGATCTCCGACCGTCCCGCCGAAATCGAGGACCGCGCCGTTCC
CGGACATTGGGAAGGCGACCTCATCATCGGCGGACACCGCAACAGCGCCATCGGCACCCTCGTGGAACGCTCCACCCGGTTCGTGATGCTGATCCATCTC
CCCATCGATCGCACCGCAGAATCCGTCCGGGACGGACTGATCAGCGCCGTCAAGACACTCCCACGCGAACTCCGTCGCTCGATCACCTGGGACCAGGGCT
CGGAAATGGCAGCTCACAAGTCGTTCACGATAGCCACCGACATCCCGGTCTACTTCTGCGACCCCGCGAGTCCCTGGCAACGCGGCAGCAACGAGAACAC
CAACGGACTCCTTCGCCAATACTTCCCCAAGGGAAAGGGAACAGACCTCGCCCGATTCACCGCAACCGACCTGACGAACGTCGCCCACGAGCTCAACACC
CGCCCACGCAAAACGCTCGGCTGGGAAACCCCAGCCGAACGCCTCGCTAAACTACTCGCCAGCTAATCGTCGTGTTGCAACAACCACTGGAATCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1212 bp403 aa2551466+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQGRVPGAAEQRALAPRSGGTSRNQPEHGIPLGQSNGRRIYPDGRVVDYKDRVPVVVDPVQRASMRSLEAALHPRFLSLQERELIRDLTRAGLSLCRVAA
KLGRSVSTISREIRRNQLPGEGGYHPYVAHRKAASRRPRPKATRLVRNPQLRSYVQRKLTLRWSPEQISRSLIREFPGDAEMRVAHETIYQAFYVQGRGQ
LRRELTMVLRTGRAKRKPHRSGAARRHRFADPMVMISDRPAEIEDRAVPGHWEGDLIIGGHRNSAIGTLVERSTRFVMLIHLPIDRTAESVRDGLISAVK
TLPRELRRSITWDQGSEMAAHKSFTIATDIPVYFCDPASPWQRGSNENTNGLLRQYFPKGKGTDLARFTATDLTNVAHELNTRPRKTLGWETPAERLAKL
LAS

 

Blast result :
Comments
There are 15 occurrences in the CTCB07 genome.
ISLxx5 is 67% aa similar to ISBlo4.
References