ISLxx5
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006087 | ND | Leifsonia xyli | Leifsonia xyli subsp xyli CTCB07 |
DNA section
IS Length : 1495 bp
Ends
IR Length : 20/23
IRL : GGGTTCTAGCGGTTGTTGCAACATCTGGAGTTTCTAGGAGTTGCAAGGAC
IRR : GGATTCCAGTGGTTGTTGCAACACGACGATTAGCTGGCGAGTAGTTTAGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGGTTCTAGCGGTTGTTGCAACATCTGGAGTTTCTAGGAGTTGCAAGGACCGTGTCCCGTTTAAGGCGCAGTGCGGGGAAGAGGAAGTACACCCAGGCGG
AGCGTGAAGCCTTCTTCGTCATTTTCAAGGAGTCCAGGAGTACGACGATCGCGGCGAGGGAGCTAGGGTTCAACCCCGCGACGTGCGCGCAATGGGTTCG
CAAGGCGGGCCTGGCTAGTCACGGCTACACCGGCGGCGGCATGAGCGCGCACCCATGCAAGGACGAGTACCTGGAGCTGCGGAGCAGCGGGCTCTCGCGC
CGCGAAGCGGTGGGACGAGTCGGAATCAGCCCGAACACGGGATACCTCTGGGACAGTCGAACGGGCGACGCATTTATCCAGATGGTCGCGTGGTCGATTA
CAAAGACAGGGTGCCTGTCGTTGTTGATCCTGTTCAGCGGGCGTCGATGCGTTCGCTCGAAGCCGCACTCCACCCACGATTCCTCTCCCTGCAGGAGCGT
GAGCTGATCCGGGACCTGACCAGGGCCGGCCTTTCGTTGTGTCGGGTCGCGGCCAAGCTTGGTCGCTCGGTGTCGACGATCAGTCGAGAGATTCGCCGGA
ATCAGCTTCCTGGAGAGGGCGGCTACCATCCATACGTGGCGCATCGGAAAGCGGCCAGCCGCCGACCGCGACCGAAAGCCACGAGGCTGGTCCGCAATCC
GCAGCTGCGCAGTTACGTTCAACGGAAGCTGACGCTACGTTGGTCGCCGGAGCAGATCAGCCGGTCGCTGATCCGCGAGTTCCCCGGCGATGCGGAGATG
CGCGTGGCGCACGAGACGATCTATCAAGCCTTCTACGTGCAGGGCCGTGGACAACTCCGCCGCGAGCTCACGATGGTGCTGCGGACCGGCCGGGCCAAGC
GGAAACCGCATCGTTCTGGCGCCGCTCGCAGACATCGTTTCGCGGATCCGATGGTAATGATCTCCGACCGTCCCGCCGAAATCGAGGACCGCGCCGTTCC
CGGACATTGGGAAGGCGACCTCATCATCGGCGGACACCGCAACAGCGCCATCGGCACCCTCGTGGAACGCTCCACCCGGTTCGTGATGCTGATCCATCTC
CCCATCGATCGCACCGCAGAATCCGTCCGGGACGGACTGATCAGCGCCGTCAAGACACTCCCACGCGAACTCCGTCGCTCGATCACCTGGGACCAGGGCT
CGGAAATGGCAGCTCACAAGTCGTTCACGATAGCCACCGACATCCCGGTCTACTTCTGCGACCCCGCGAGTCCCTGGCAACGCGGCAGCAACGAGAACAC
CAACGGACTCCTTCGCCAATACTTCCCCAAGGGAAAGGGAACAGACCTCGCCCGATTCACCGCAACCGACCTGACGAACGTCGCCCACGAGCTCAACACC
CGCCCACGCAAAACGCTCGGCTGGGAAACCCCAGCCGAACGCCTCGCTAAACTACTCGCCAGCTAATCGTCGTGTTGCAACAACCACTGGAATCC
AGCGTGAAGCCTTCTTCGTCATTTTCAAGGAGTCCAGGAGTACGACGATCGCGGCGAGGGAGCTAGGGTTCAACCCCGCGACGTGCGCGCAATGGGTTCG
CAAGGCGGGCCTGGCTAGTCACGGCTACACCGGCGGCGGCATGAGCGCGCACCCATGCAAGGACGAGTACCTGGAGCTGCGGAGCAGCGGGCTCTCGCGC
CGCGAAGCGGTGGGACGAGTCGGAATCAGCCCGAACACGGGATACCTCTGGGACAGTCGAACGGGCGACGCATTTATCCAGATGGTCGCGTGGTCGATTA
CAAAGACAGGGTGCCTGTCGTTGTTGATCCTGTTCAGCGGGCGTCGATGCGTTCGCTCGAAGCCGCACTCCACCCACGATTCCTCTCCCTGCAGGAGCGT
GAGCTGATCCGGGACCTGACCAGGGCCGGCCTTTCGTTGTGTCGGGTCGCGGCCAAGCTTGGTCGCTCGGTGTCGACGATCAGTCGAGAGATTCGCCGGA
ATCAGCTTCCTGGAGAGGGCGGCTACCATCCATACGTGGCGCATCGGAAAGCGGCCAGCCGCCGACCGCGACCGAAAGCCACGAGGCTGGTCCGCAATCC
GCAGCTGCGCAGTTACGTTCAACGGAAGCTGACGCTACGTTGGTCGCCGGAGCAGATCAGCCGGTCGCTGATCCGCGAGTTCCCCGGCGATGCGGAGATG
CGCGTGGCGCACGAGACGATCTATCAAGCCTTCTACGTGCAGGGCCGTGGACAACTCCGCCGCGAGCTCACGATGGTGCTGCGGACCGGCCGGGCCAAGC
GGAAACCGCATCGTTCTGGCGCCGCTCGCAGACATCGTTTCGCGGATCCGATGGTAATGATCTCCGACCGTCCCGCCGAAATCGAGGACCGCGCCGTTCC
CGGACATTGGGAAGGCGACCTCATCATCGGCGGACACCGCAACAGCGCCATCGGCACCCTCGTGGAACGCTCCACCCGGTTCGTGATGCTGATCCATCTC
CCCATCGATCGCACCGCAGAATCCGTCCGGGACGGACTGATCAGCGCCGTCAAGACACTCCCACGCGAACTCCGTCGCTCGATCACCTGGGACCAGGGCT
CGGAAATGGCAGCTCACAAGTCGTTCACGATAGCCACCGACATCCCGGTCTACTTCTGCGACCCCGCGAGTCCCTGGCAACGCGGCAGCAACGAGAACAC
CAACGGACTCCTTCGCCAATACTTCCCCAAGGGAAAGGGAACAGACCTCGCCCGATTCACCGCAACCGACCTGACGAACGTCGCCCACGAGCTCAACACC
CGCCCACGCAAAACGCTCGGCTGGGAAACCCCAGCCGAACGCCTCGCTAAACTACTCGCCAGCTAATCGTCGTGTTGCAACAACCACTGGAATCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1212 bp | 403 aa | 255 | 1466 | + | No |
Chemistry : DDE
ORF sequence :
MQGRVPGAAEQRALAPRSGGTSRNQPEHGIPLGQSNGRRIYPDGRVVDYKDRVPVVVDPVQRASMRSLEAALHPRFLSLQERELIRDLTRAGLSLCRVAA
KLGRSVSTISREIRRNQLPGEGGYHPYVAHRKAASRRPRPKATRLVRNPQLRSYVQRKLTLRWSPEQISRSLIREFPGDAEMRVAHETIYQAFYVQGRGQ
LRRELTMVLRTGRAKRKPHRSGAARRHRFADPMVMISDRPAEIEDRAVPGHWEGDLIIGGHRNSAIGTLVERSTRFVMLIHLPIDRTAESVRDGLISAVK
TLPRELRRSITWDQGSEMAAHKSFTIATDIPVYFCDPASPWQRGSNENTNGLLRQYFPKGKGTDLARFTATDLTNVAHELNTRPRKTLGWETPAERLAKL
LAS
KLGRSVSTISREIRRNQLPGEGGYHPYVAHRKAASRRPRPKATRLVRNPQLRSYVQRKLTLRWSPEQISRSLIREFPGDAEMRVAHETIYQAFYVQGRGQ
LRRELTMVLRTGRAKRKPHRSGAARRHRFADPMVMISDRPAEIEDRAVPGHWEGDLIIGGHRNSAIGTLVERSTRFVMLIHLPIDRTAESVRDGLISAVK
TLPRELRRSITWDQGSEMAAHKSFTIATDIPVYFCDPASPWQRGSNENTNGLLRQYFPKGKGTDLARFTATDLTNVAHELNTRPRKTLGWETPAERLAKL
LAS
Blast result :
Comments
There are 15 occurrences in the CTCB07 genome.
ISLxx5 is 67% aa similar to ISBlo4.
ISLxx5 is 67% aa similar to ISBlo4.
References