ISLxx4
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006087 | ND | Leifsonia xyli | Leifsonia xyli subsp xyli CTCB07 |
DNA section
IS Length : 1110 bp
Ends
IR Length : 21/22
IRL : TGTGATGTCCAGGGGGGTTGTTTCGGCGATACGGTCGTGAGGAGTTGAGG
IRR : TGTGATGTCCAGGGAGGTTGTTGTCGATTCTGCTAATGGGTGGGGCTCTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNNNNNNN | CCTAGG | NNNNNNNNNN | 6 |
DNA sequence
TGTGATGTCCAGGGGGGTTGTTTCGGCGATACGGTCGTGAGGAGTTGAGGGGCGAGGGCCTCCGGTTGTGAAGTGGAGCTGTTCAGTTCAACCGCTTCAC
GATCCAGGAGGCCTTCGTGTCCCACGTTAACGCTGCTCTCACACCGCGCGCTCGTCTGCGCCTTGCCAGGCTCATCGTCGAGGACCATTGGCTGGTCTCC
GTCGCAGCGAAGATGTTTATGGTCTCGCCCGTTACCGCGCGGAAATGGGCGGCGAGGTTCCGCGCCGAAGGCACGGGAGGGATGACCGACCGGTCTAGCC
GCCCACGATCGATGCCAACGCGGACGCCGTTGCCCGTGCTCAAGCGGATCGTGCGGGCGAGGTGGCGACGACGCCTGGGGCCGGTGCAGATCGCCGGCGA
GCTTGGCCTTCCCGCCTCGACCGTCCACGCCGTCCTGGTGTGCTGCCGCATCAACCGGCTCTGCACCATTGATCGGGTCACGGGCGAGCCGATCCGTCGC
TACGAGCACGACCACCCTGGATCGCTGATCCATGTCGACGTGACGAAGTTCGGCAACATCCCCGACGGCGGCGGCTGACGATTCGTCGGCCGCGTCCAGG
GCGAACGCAACCGGGAAGCGACCGCCACCCGCACGAAGAGCAGGAACCACCGCTACGAGCCACGGTTGGGCACCGTGTTCGTCTACACGATCATCGACGA
CCACTCCCGCGTCGCCTACGCCGAGATCTGCTCCGACGAGAAGGCGGACACCGCGATCGGTGTCCTGCGGCGTGCTGTCGCCTGGTTCGCCGACCGGGAT
GTCAGCGTCGAACTCGTCCTCTCGGACAACGGCTCCGCCTACAAGTCCTACGCCTGGCGAGACGCCTGCACAGAGCTCGGGATCAGGGCGAAGAAGACCC
GACCATACCGACCACAGACCAACGGGAAGATCGAACGCTTCCACCGCACACTCGCCGACGGCTGGGCCTACGCCCAGTTCTATGGTTCAGAGGCCGAACG
ACGAGAAGCACTCCCCGGCTGGCCCCACTTCTACAATCATCACCAGCACCACTCCGCCATCAGAGCCCCACCCATTAGCAGAATCGACAACAACCTCCCT
GGACATCACA
GATCCAGGAGGCCTTCGTGTCCCACGTTAACGCTGCTCTCACACCGCGCGCTCGTCTGCGCCTTGCCAGGCTCATCGTCGAGGACCATTGGCTGGTCTCC
GTCGCAGCGAAGATGTTTATGGTCTCGCCCGTTACCGCGCGGAAATGGGCGGCGAGGTTCCGCGCCGAAGGCACGGGAGGGATGACCGACCGGTCTAGCC
GCCCACGATCGATGCCAACGCGGACGCCGTTGCCCGTGCTCAAGCGGATCGTGCGGGCGAGGTGGCGACGACGCCTGGGGCCGGTGCAGATCGCCGGCGA
GCTTGGCCTTCCCGCCTCGACCGTCCACGCCGTCCTGGTGTGCTGCCGCATCAACCGGCTCTGCACCATTGATCGGGTCACGGGCGAGCCGATCCGTCGC
TACGAGCACGACCACCCTGGATCGCTGATCCATGTCGACGTGACGAAGTTCGGCAACATCCCCGACGGCGGCGGCTGACGATTCGTCGGCCGCGTCCAGG
GCGAACGCAACCGGGAAGCGACCGCCACCCGCACGAAGAGCAGGAACCACCGCTACGAGCCACGGTTGGGCACCGTGTTCGTCTACACGATCATCGACGA
CCACTCCCGCGTCGCCTACGCCGAGATCTGCTCCGACGAGAAGGCGGACACCGCGATCGGTGTCCTGCGGCGTGCTGTCGCCTGGTTCGCCGACCGGGAT
GTCAGCGTCGAACTCGTCCTCTCGGACAACGGCTCCGCCTACAAGTCCTACGCCTGGCGAGACGCCTGCACAGAGCTCGGGATCAGGGCGAAGAAGACCC
GACCATACCGACCACAGACCAACGGGAAGATCGAACGCTTCCACCGCACACTCGCCGACGGCTGGGCCTACGCCCAGTTCTATGGTTCAGAGGCCGAACG
ACGAGAAGCACTCCCCGGCTGGCCCCACTTCTACAATCATCACCAGCACCACTCCGCCATCAGAGCCCCACCCATTAGCAGAATCGACAACAACCTCCCT
GGACATCACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
903 bp | 331 aa | 213 | 1115 | + | No |
Chemistry : DDE
ORF sequence :
MSHVNAALTPRARLRLARLIVEDHWLVSVAAKMFMVSPVTARKWAARFRAEGTGGMTDRSSRPRSMPTRTPLPVLKRVRARWRRRLGPVQIAGELGLPAS
TVHAVLVCCRINRLCTIDRVTGEPIRRYEHDHPGSLIHVDVTKFGNIPDGGG*RFVGRVQGERNREATATRTKSRNHRYEPRLGTVFVYTIIDDHSRVAY
AEICSDEKADTAIGVLRRAVAWFADRDVSVELVLSDNGSAYKSYAWRDACTELGIRAKKTRPYRPQTNGKIERFHRTLADGWAYAQFYGSEAERREALPG
WPHFYNHHQHHSAIRAPPISRIDNNLPGHHT
TVHAVLVCCRINRLCTIDRVTGEPIRRYEHDHPGSLIHVDVTKFGNIPDGGG*RFVGRVQGERNREATATRTKSRNHRYEPRLGTVFVYTIIDDHSRVAY
AEICSDEKADTAIGVLRRAVAWFADRDVSVELVLSDNGSAYKSYAWRDACTELGIRAKKTRPYRPQTNGKIERFHRTLADGWAYAQFYGSEAERREALPG
WPHFYNHHQHHSAIRAPPISRIDNNLPGHHT
Blast result :
Comments
This IS element presents a stop codon in frame at position 576 of the sequence. The true stop codon is dependent upon the duplication of the insertion site [CCTAGG] where a TAG downstream the transposase coding region outside the IS element is created. There are 26 occurrences in the CTCB07 genome.
ISLxx4 is 81% aa similar to IS5564 (ORF2).
ISLxx4 is 81% aa similar to IS5564 (ORF2).
References