ISLxx3
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006087 | ND | Leifsonia xyli | Leifsonia xyli subsp xyli CTCB07 |
DNA section
IS Length : 2637 bp
Ends
IR Length : 28/31
IRL : ACCACTGGGACGGCTTGATTCGCTACCACCTTTCGACTTGCCGGGTGATC
IRR : ACCGCTAGGACGGCTTGATTCACTACCACCTGGCGGGGCTGGTTAGACGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
ACCACTGGGACGGCTTGATTCGCTACCACCTTTCGACTTGCCGGGTGATCGTGACGGTTTGATCGGTGCCCACCCCACCGTTGGAGCATCTGGCGTGATG
TGATGCCAGCGGTGAAGGGCAGACATGAGGTTGCGGATGGAGTTGTTCGCCAGGATCCGGTGTGATGCGTGGGTCGAGGGTCTCTCGATCCGGGAGCTCT
CGCGGCGGCACGGGGTGTCTCGGGAGACGGTGCGGACGGCGTTGTCGCAGGCGGAGCCGTCGCCGAGGAAGGTCCCGGTTCGGGTCGCGTCCCGACTGGA
GTCGTTCAAGGCGGCGATCGATTCGATGCTGCTTGAGGACACGACGTCGCCGAAGAAGCAGCGTCACACGGCCCGACGTGTTCTGGCGCGGTTGGCGGAG
GAGGACGGCGCGGTCGAGTTGTCGTACTCGACGGTCCGGGATTATGTTCGCCGGCGCCGGCCGGAGATCGATGTTGCCGCCGGTCGACGCTTGGAAGTGT
TCGTCCCGCAAGAGCACGCACCTGGCGCTGAGGCGGAAGTCGACTTCGGCGAGGTCTGGGTGATCTTGGCTGGGGTGAAGACGAAGTGCCATATGTTCGC
GTTCCGGCTTTCGCACTCGGGGAAGGCGGTTCACCGCGTCTACTCGACCCAGGGGCAGGAAGCATTCCTCGAGGGCCACATCGACGCGTTCGAAACCATC
GGCGGGATCCCGTCCAAGCACATCAAGTACGACAACCTCACCGCCGCGGTGACCGCGGTGATCTATGGCAAGGGTCGCCGGCGGGCGGAGAATGATCGCT
GGGTGCTCTTTCGTTCCCACTACGGGTTCGACGCGTTCTACTGCCAACCCGGGATCGAGGGAGCACACGAGAAGGGCGGGATCGAGGGCGACGTCGGCCG
GTTCCGACGCAACCATCTCTCACCGATGCCGGTCGTGTCCTCGTTGGCGGAGCTGAATGACCGCATCCGGGTTTGGGACGAGGCGGATGACAACCGGCGG
ATCGCGGACCGGATCCGCACAGTCGGCCAGGACTTCGCCGCTGAGCGGGAACAGCTCGTCTCGTTGCCTTTTGACCGGTTCGATCCCGGCCTGCAGTTGG
CGCCGCGAGTTGACCGGTCGAGCCTGATCACCGTCCGGATGGCGAAATACTCCGTCCCCGCCCGCATGATCGGTCGGCCGGTGCGGGTGTCGTTGCAAGC
GTCGGAGGTGATCGTGTTCGACGGACGCACCGAGATCGCTCGCCACCCCCGAGTCGCGGCCGCGCATGGGCAGAGCGTGAACCTAGACCATTACCTCGAG
GTGCTCCGCGGCAAGCCGGGCGCGCTACCTGGCTCGACCGCACTGGCACAGGCACGCGCCGCGGGGACATTCACCGCTGAGCACGAGGCGTTCTGGGCGG
CAGCGCGCAAGACCGACGGGGATGCCACCGCGACCAGAGAACTGATCGATGTGCTCCTCCTGCATCGATCCATGACGGACGCCGACGTGGTCGCCGGGAT
CGCGGCCGCGCTCACCGTTGGCGCTGTCACCGCGGACGTCGTCGCGGTCGAGGCACGCCGGCACGCCGCTGCGGGTGGTCGCGATTCGAACCGTCATCTC
GTTGAACATCCATCCACCCTTGAGCGGCGGGTTGTCAGCCTCACTCAACGTTGGCTTGCCGACCCGACTGCTGTGATCGCTGGCCTGCCGCCGGACAAAC
GTCCGCTGCCGTCAGTCGCCGGCTATGACGAGCTGTTGACTCGCCGCACACCCCAGTTCCCTGCAGTATCGAATCAGAAGGAAGACACCGGCACATGAGT
CCCATTACCACCACCCTCCGACGTCGTCGCGGGTTGACCGAGGAGGCCGCGACCGCGGCCGTCGATCAAGTCTGCCGGCGGCTGCGCCTGCCCACGATCC
GCGCCGTCGTCGACGAGGCGGTCAAGGTCGCCGAGAAGGAGCAGCTGTCTTACCAGGGGTTCCTCGCGGAGTTGCTGATGGCCGAGTGCGATGACCGCGA
CCGCCGCTCTTCCGTCCGCCGCGTCTCTGCCGCCGGCTTCCCGAGAGACAAATGGTTGGGCGATTTCGACTACGACGCGAACCCGAACATCAACCCCGCC
ACCATCAACCAGCTCGCGACCGGGGAATGGATCCGCAAGAGCCAACCCCTCTGCCTGATCGGGGACTCCGGAACCGGGAAGTCTCACCTGCTGATCGGGC
TCGGCACCGCTGCTGCGGAGAAGGGCTACCGGGTCAAATACACGCTCGCCACGAGGCTCGTGAACGAACTCGTCGAGGCCGCCGACGAGAAGCAGTTGGT
GCGTACGATCGCCCGTTACGGCCGTGTCGACCTGCTCATCATCGACGAGCTCGGCTACATGGAGCTGGACCGCCGCGGTGCCGAGCTCCTCTTCCAAGTC
CTCACCGAGCGTGAGGAGAAGAACTCGATCGCGATCGCCTCCAACGAATCGTTCTCCGGCTGGACCAAGACCTTCACCGACCCCAGACTCTGCGCCGCGA
TCGTTGACCGCCTCACCTTCAACAGCACCATCATCGAGACCGGCACCGACTCCTACCGTCTCGCGCACACCATGAACCAGCTCCAAACCGTCTAACCAGC
CCCGCCAGGTGGTAGTGAATCAAGCCGTCCTAGCGGT
TGATGCCAGCGGTGAAGGGCAGACATGAGGTTGCGGATGGAGTTGTTCGCCAGGATCCGGTGTGATGCGTGGGTCGAGGGTCTCTCGATCCGGGAGCTCT
CGCGGCGGCACGGGGTGTCTCGGGAGACGGTGCGGACGGCGTTGTCGCAGGCGGAGCCGTCGCCGAGGAAGGTCCCGGTTCGGGTCGCGTCCCGACTGGA
GTCGTTCAAGGCGGCGATCGATTCGATGCTGCTTGAGGACACGACGTCGCCGAAGAAGCAGCGTCACACGGCCCGACGTGTTCTGGCGCGGTTGGCGGAG
GAGGACGGCGCGGTCGAGTTGTCGTACTCGACGGTCCGGGATTATGTTCGCCGGCGCCGGCCGGAGATCGATGTTGCCGCCGGTCGACGCTTGGAAGTGT
TCGTCCCGCAAGAGCACGCACCTGGCGCTGAGGCGGAAGTCGACTTCGGCGAGGTCTGGGTGATCTTGGCTGGGGTGAAGACGAAGTGCCATATGTTCGC
GTTCCGGCTTTCGCACTCGGGGAAGGCGGTTCACCGCGTCTACTCGACCCAGGGGCAGGAAGCATTCCTCGAGGGCCACATCGACGCGTTCGAAACCATC
GGCGGGATCCCGTCCAAGCACATCAAGTACGACAACCTCACCGCCGCGGTGACCGCGGTGATCTATGGCAAGGGTCGCCGGCGGGCGGAGAATGATCGCT
GGGTGCTCTTTCGTTCCCACTACGGGTTCGACGCGTTCTACTGCCAACCCGGGATCGAGGGAGCACACGAGAAGGGCGGGATCGAGGGCGACGTCGGCCG
GTTCCGACGCAACCATCTCTCACCGATGCCGGTCGTGTCCTCGTTGGCGGAGCTGAATGACCGCATCCGGGTTTGGGACGAGGCGGATGACAACCGGCGG
ATCGCGGACCGGATCCGCACAGTCGGCCAGGACTTCGCCGCTGAGCGGGAACAGCTCGTCTCGTTGCCTTTTGACCGGTTCGATCCCGGCCTGCAGTTGG
CGCCGCGAGTTGACCGGTCGAGCCTGATCACCGTCCGGATGGCGAAATACTCCGTCCCCGCCCGCATGATCGGTCGGCCGGTGCGGGTGTCGTTGCAAGC
GTCGGAGGTGATCGTGTTCGACGGACGCACCGAGATCGCTCGCCACCCCCGAGTCGCGGCCGCGCATGGGCAGAGCGTGAACCTAGACCATTACCTCGAG
GTGCTCCGCGGCAAGCCGGGCGCGCTACCTGGCTCGACCGCACTGGCACAGGCACGCGCCGCGGGGACATTCACCGCTGAGCACGAGGCGTTCTGGGCGG
CAGCGCGCAAGACCGACGGGGATGCCACCGCGACCAGAGAACTGATCGATGTGCTCCTCCTGCATCGATCCATGACGGACGCCGACGTGGTCGCCGGGAT
CGCGGCCGCGCTCACCGTTGGCGCTGTCACCGCGGACGTCGTCGCGGTCGAGGCACGCCGGCACGCCGCTGCGGGTGGTCGCGATTCGAACCGTCATCTC
GTTGAACATCCATCCACCCTTGAGCGGCGGGTTGTCAGCCTCACTCAACGTTGGCTTGCCGACCCGACTGCTGTGATCGCTGGCCTGCCGCCGGACAAAC
GTCCGCTGCCGTCAGTCGCCGGCTATGACGAGCTGTTGACTCGCCGCACACCCCAGTTCCCTGCAGTATCGAATCAGAAGGAAGACACCGGCACATGAGT
CCCATTACCACCACCCTCCGACGTCGTCGCGGGTTGACCGAGGAGGCCGCGACCGCGGCCGTCGATCAAGTCTGCCGGCGGCTGCGCCTGCCCACGATCC
GCGCCGTCGTCGACGAGGCGGTCAAGGTCGCCGAGAAGGAGCAGCTGTCTTACCAGGGGTTCCTCGCGGAGTTGCTGATGGCCGAGTGCGATGACCGCGA
CCGCCGCTCTTCCGTCCGCCGCGTCTCTGCCGCCGGCTTCCCGAGAGACAAATGGTTGGGCGATTTCGACTACGACGCGAACCCGAACATCAACCCCGCC
ACCATCAACCAGCTCGCGACCGGGGAATGGATCCGCAAGAGCCAACCCCTCTGCCTGATCGGGGACTCCGGAACCGGGAAGTCTCACCTGCTGATCGGGC
TCGGCACCGCTGCTGCGGAGAAGGGCTACCGGGTCAAATACACGCTCGCCACGAGGCTCGTGAACGAACTCGTCGAGGCCGCCGACGAGAAGCAGTTGGT
GCGTACGATCGCCCGTTACGGCCGTGTCGACCTGCTCATCATCGACGAGCTCGGCTACATGGAGCTGGACCGCCGCGGTGCCGAGCTCCTCTTCCAAGTC
CTCACCGAGCGTGAGGAGAAGAACTCGATCGCGATCGCCTCCAACGAATCGTTCTCCGGCTGGACCAAGACCTTCACCGACCCCAGACTCTGCGCCGCGA
TCGTTGACCGCCTCACCTTCAACAGCACCATCATCGAGACCGGCACCGACTCCTACCGTCTCGCGCACACCATGAACCAGCTCCAAACCGTCTAACCAGC
CCCGCCAGGTGGTAGTGAATCAAGCCGTCCTAGCGGT
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
801 bp | 266 aa | 43 | 843 | + | No |
Chemistry : DDE
ORF sequence :
MRLRMELFARIRCDAWVEGLSIRELSRRHGVSRETVRTALSQAEPSPRKVPVRVASRLESFKAAIDSMLLEDTTSPKKQRHTARRVLARLAEEDGAVELS
YSTVRDYVRRRRPEIDVAAGRRLEVFVPQEHAPGAEAEVDFGEVWVILAGVKTKCHMFAFRLSHSGKAVHRVYSTQGQEAFLEGHIDAFETIGGIPSKHI
KYDNLTAAVTAVIYGKGRRRAENDRWVLFRSHYGFDAFYCQPGIEGAHEKGGIEGDVGRFRRNHLSPMPVVSSLAELNDRIRVWDEADDNRRIADRIRTV
GQDFAAEREQLVSLPFDRFDPGLQLAPRVDRSSLITVRMAKYSVPARMIGRPVRVSLQASEVIVFDGRTEIARHPRVAAAHGQSVNLDHYLEVLRGKPGA
LPGSTALAQARAAGTFTAEHEAFWAAARKTDGDATATRELIDVLLLHRSMTDADVVAGIAAALTVGAVTADVVAVEARRHAAAGGRDSNRHLVEHPSTLE
RRVVSLTQRWLADPTAVIAGLPPDKRPLPSVAGYDELLTRRTPQFPAVSNQKEDTGT
YSTVRDYVRRRRPEIDVAAGRRLEVFVPQEHAPGAEAEVDFGEVWVILAGVKTKCHMFAFRLSHSGKAVHRVYSTQGQEAFLEGHIDAFETIGGIPSKHI
KYDNLTAAVTAVIYGKGRRRAENDRWVLFRSHYGFDAFYCQPGIEGAHEKGGIEGDVGRFRRNHLSPMPVVSSLAELNDRIRVWDEADDNRRIADRIRTV
GQDFAAEREQLVSLPFDRFDPGLQLAPRVDRSSLITVRMAKYSVPARMIGRPVRVSLQASEVIVFDGRTEIARHPRVAAAHGQSVNLDHYLEVLRGKPGA
LPGSTALAQARAAGTFTAEHEAFWAAARKTDGDATATRELIDVLLLHRSMTDADVVAGIAAALTVGAVTADVVAVEARRHAAAGGRDSNRHLVEHPSTLE
RRVVSLTQRWLADPTAVIAGLPPDKRPLPSVAGYDELLTRRTPQFPAVSNQKEDTGT
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1674 bp | 557 aa | 840 | 2513 | + | No |
AG : IS21 helper
ORF sequence :
MSPITTTLRRRRGLTEEAATAAVDQVCRRLRLPTIRAVVDEAVKVAEKEQLSYQGFLAELLMAECDDRDRRSSVRRVSAAGFPRDKWLGDFDYDANPNIN
PATINQLATGEWIRKSQPLCLIGDSGTGKSHLLIGLGTAAAEKGYRVKYTLATRLVNELVEAADEKQLVRTIARYGRVDLLIIDELGYMELDRRGAELLF
QVLTEREEKNSIAIASNESFSGWTKTFTDPRLCAAIVDRLTFNSTIIETGTDSYRLAHTMNQLQTV
PATINQLATGEWIRKSQPLCLIGDSGTGKSHLLIGLGTAAAEKGYRVKYTLATRLVNELVEAADEKQLVRTIARYGRVDLLIIDELGYMELDRRGAELLF
QVLTEREEKNSIAIASNESFSGWTKTFTDPRLCAAIVDRLTFNSTIIETGTDSYRLAHTMNQLQTV
Blast result :
Comments
There is only one copy of ISLxx3 (coordinates : 1433367-1430731).
ISLxx3 is 46% (ORF1) and 56% (ORF2) aa similar to ISFlsp1.
ISLxx3 is 46% (ORF1) and 56% (ORF2) aa similar to ISFlsp1.
References