ISLxx3

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006087 ND Leifsonia xyli
Leifsonia xyli subsp xyli CTCB07
DNA section
IS Length : 2637 bp

Ends


IR Length : 28/31

IRL : ACCACTGGGACGGCTTGATTCGCTACCACCTTTCGACTTGCCGGGTGATC
IRR : ACCGCTAGGACGGCTTGATTCACTACCACCTGGCGGGGCTGGTTAGACGG

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

ACCACTGGGACGGCTTGATTCGCTACCACCTTTCGACTTGCCGGGTGATCGTGACGGTTTGATCGGTGCCCACCCCACCGTTGGAGCATCTGGCGTGATG
TGATGCCAGCGGTGAAGGGCAGACATGAGGTTGCGGATGGAGTTGTTCGCCAGGATCCGGTGTGATGCGTGGGTCGAGGGTCTCTCGATCCGGGAGCTCT
CGCGGCGGCACGGGGTGTCTCGGGAGACGGTGCGGACGGCGTTGTCGCAGGCGGAGCCGTCGCCGAGGAAGGTCCCGGTTCGGGTCGCGTCCCGACTGGA
GTCGTTCAAGGCGGCGATCGATTCGATGCTGCTTGAGGACACGACGTCGCCGAAGAAGCAGCGTCACACGGCCCGACGTGTTCTGGCGCGGTTGGCGGAG
GAGGACGGCGCGGTCGAGTTGTCGTACTCGACGGTCCGGGATTATGTTCGCCGGCGCCGGCCGGAGATCGATGTTGCCGCCGGTCGACGCTTGGAAGTGT
TCGTCCCGCAAGAGCACGCACCTGGCGCTGAGGCGGAAGTCGACTTCGGCGAGGTCTGGGTGATCTTGGCTGGGGTGAAGACGAAGTGCCATATGTTCGC
GTTCCGGCTTTCGCACTCGGGGAAGGCGGTTCACCGCGTCTACTCGACCCAGGGGCAGGAAGCATTCCTCGAGGGCCACATCGACGCGTTCGAAACCATC
GGCGGGATCCCGTCCAAGCACATCAAGTACGACAACCTCACCGCCGCGGTGACCGCGGTGATCTATGGCAAGGGTCGCCGGCGGGCGGAGAATGATCGCT
GGGTGCTCTTTCGTTCCCACTACGGGTTCGACGCGTTCTACTGCCAACCCGGGATCGAGGGAGCACACGAGAAGGGCGGGATCGAGGGCGACGTCGGCCG
GTTCCGACGCAACCATCTCTCACCGATGCCGGTCGTGTCCTCGTTGGCGGAGCTGAATGACCGCATCCGGGTTTGGGACGAGGCGGATGACAACCGGCGG
ATCGCGGACCGGATCCGCACAGTCGGCCAGGACTTCGCCGCTGAGCGGGAACAGCTCGTCTCGTTGCCTTTTGACCGGTTCGATCCCGGCCTGCAGTTGG
CGCCGCGAGTTGACCGGTCGAGCCTGATCACCGTCCGGATGGCGAAATACTCCGTCCCCGCCCGCATGATCGGTCGGCCGGTGCGGGTGTCGTTGCAAGC
GTCGGAGGTGATCGTGTTCGACGGACGCACCGAGATCGCTCGCCACCCCCGAGTCGCGGCCGCGCATGGGCAGAGCGTGAACCTAGACCATTACCTCGAG
GTGCTCCGCGGCAAGCCGGGCGCGCTACCTGGCTCGACCGCACTGGCACAGGCACGCGCCGCGGGGACATTCACCGCTGAGCACGAGGCGTTCTGGGCGG
CAGCGCGCAAGACCGACGGGGATGCCACCGCGACCAGAGAACTGATCGATGTGCTCCTCCTGCATCGATCCATGACGGACGCCGACGTGGTCGCCGGGAT
CGCGGCCGCGCTCACCGTTGGCGCTGTCACCGCGGACGTCGTCGCGGTCGAGGCACGCCGGCACGCCGCTGCGGGTGGTCGCGATTCGAACCGTCATCTC
GTTGAACATCCATCCACCCTTGAGCGGCGGGTTGTCAGCCTCACTCAACGTTGGCTTGCCGACCCGACTGCTGTGATCGCTGGCCTGCCGCCGGACAAAC
GTCCGCTGCCGTCAGTCGCCGGCTATGACGAGCTGTTGACTCGCCGCACACCCCAGTTCCCTGCAGTATCGAATCAGAAGGAAGACACCGGCACATGAGT
CCCATTACCACCACCCTCCGACGTCGTCGCGGGTTGACCGAGGAGGCCGCGACCGCGGCCGTCGATCAAGTCTGCCGGCGGCTGCGCCTGCCCACGATCC
GCGCCGTCGTCGACGAGGCGGTCAAGGTCGCCGAGAAGGAGCAGCTGTCTTACCAGGGGTTCCTCGCGGAGTTGCTGATGGCCGAGTGCGATGACCGCGA
CCGCCGCTCTTCCGTCCGCCGCGTCTCTGCCGCCGGCTTCCCGAGAGACAAATGGTTGGGCGATTTCGACTACGACGCGAACCCGAACATCAACCCCGCC
ACCATCAACCAGCTCGCGACCGGGGAATGGATCCGCAAGAGCCAACCCCTCTGCCTGATCGGGGACTCCGGAACCGGGAAGTCTCACCTGCTGATCGGGC
TCGGCACCGCTGCTGCGGAGAAGGGCTACCGGGTCAAATACACGCTCGCCACGAGGCTCGTGAACGAACTCGTCGAGGCCGCCGACGAGAAGCAGTTGGT
GCGTACGATCGCCCGTTACGGCCGTGTCGACCTGCTCATCATCGACGAGCTCGGCTACATGGAGCTGGACCGCCGCGGTGCCGAGCTCCTCTTCCAAGTC
CTCACCGAGCGTGAGGAGAAGAACTCGATCGCGATCGCCTCCAACGAATCGTTCTCCGGCTGGACCAAGACCTTCACCGACCCCAGACTCTGCGCCGCGA
TCGTTGACCGCCTCACCTTCAACAGCACCATCATCGAGACCGGCACCGACTCCTACCGTCTCGCGCACACCATGAACCAGCTCCAAACCGTCTAACCAGC
CCCGCCAGGTGGTAGTGAATCAAGCCGTCCTAGCGGT
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
801 bp266 aa43843+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRLRMELFARIRCDAWVEGLSIRELSRRHGVSRETVRTALSQAEPSPRKVPVRVASRLESFKAAIDSMLLEDTTSPKKQRHTARRVLARLAEEDGAVELS
YSTVRDYVRRRRPEIDVAAGRRLEVFVPQEHAPGAEAEVDFGEVWVILAGVKTKCHMFAFRLSHSGKAVHRVYSTQGQEAFLEGHIDAFETIGGIPSKHI
KYDNLTAAVTAVIYGKGRRRAENDRWVLFRSHYGFDAFYCQPGIEGAHEKGGIEGDVGRFRRNHLSPMPVVSSLAELNDRIRVWDEADDNRRIADRIRTV
GQDFAAEREQLVSLPFDRFDPGLQLAPRVDRSSLITVRMAKYSVPARMIGRPVRVSLQASEVIVFDGRTEIARHPRVAAAHGQSVNLDHYLEVLRGKPGA
LPGSTALAQARAAGTFTAEHEAFWAAARKTDGDATATRELIDVLLLHRSMTDADVVAGIAAALTVGAVTADVVAVEARRHAAAGGRDSNRHLVEHPSTLE
RRVVSLTQRWLADPTAVIAGLPPDKRPLPSVAGYDELLTRRTPQFPAVSNQKEDTGT

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1674 bp557 aa8402513+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MSPITTTLRRRRGLTEEAATAAVDQVCRRLRLPTIRAVVDEAVKVAEKEQLSYQGFLAELLMAECDDRDRRSSVRRVSAAGFPRDKWLGDFDYDANPNIN
PATINQLATGEWIRKSQPLCLIGDSGTGKSHLLIGLGTAAAEKGYRVKYTLATRLVNELVEAADEKQLVRTIARYGRVDLLIIDELGYMELDRRGAELLF
QVLTEREEKNSIAIASNESFSGWTKTFTDPRLCAAIVDRLTFNSTIIETGTDSYRLAHTMNQLQTV

 

Blast result :
Comments
There is only one copy of ISLxx3 (coordinates : 1433367-1430731).
ISLxx3 is 46% (ORF1) and 56% (ORF2) aa similar to ISFlsp1.
References