ISLxx1

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006087 ND Leifsonia xyli
Leifsonia xyli subsp xyli CTCB07
DNA section
IS Length : 2205 bp

Ends


IR Length : 23

IRL : TGTTAACGCCAAAGTAGAATGGACCCCGTAGCGCCGACTTGGAATGGACC
IRR : TGTTGATGCCGAGTTGGAATGGACCCTTTTGCGCCGATTTGGGGTGGACC

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

TGTTAACGCCAAAGTAGAATGGACCCCGTAGCGCCGACTTGGAATGGACCCCCTGGCTCCAGGCTAGGAGGGTGATTTCAGTGGATACGTGGGCAGAGAT
CCGGCGGTTGCATCGGGCGGAGAAGATCCCGATCAAGCAGATCGCGCGTGATCTTGGTGTCGGGCGGAACACGGTTCGGCGGGCGTTGCGGGGCGAGGAT
CCTCCGGACCGGTCGCGGGGTCCACGGGGCTCGAAATTTGATCCATTCGTGCCGCAGATCAGAGCGCTGCTGGTGGAGTATCCGCGGATGCCGGCGTCGG
TGATCGCGGAGCGGGTGGGATGGTCGTTCTCGTCGTCGTTGTTCCGTGACCGTGTCGCGGAACTGCGGCTGGACTATCTGGGTCTGGACCCGGCGGATCG
GCTCTCTTATGCGGCGGGCGAGGTGATCCAGTGCGATCTCTGGTTCCCCGAGACGCGGGTGGCGGTCGGCGACGGGCAGGACCGGATCTTGCCTGTGCTC
GTGATGTGTCCGGGTTCTCCCGTCGGATCGAGGCGGTCATGCTCCCGTCCAAGCAGGGCGACGACCTGACCTCGGGCATGTGGTCGCTGTTGCAGCGATT
CGGTGGGGTTCCGCGCTCGTTGCTCTGGGACAGGGAAGCCGCGATCGGTGGTCTCGGGAAGCCCACCATCCTCGCGGCGACGTTCGCGGGAACGCTCGCG
ACGAGGATCAAGCTCGCGCCCGCACGAGATCCGGAGACCAAAGGTGTTGTCGAGCGCGCGAACAGATGACTTGGAGACCTCGTTCCTGCCGGGACGGATC
TTTCAGAGCGTCGATGACTTCAACGAGCAGCTGACCGGATGGTTGGATACCCGCGCGAATCAGCGGAAGGTCCGCTCGATCGCGGCCCGCCCGACAGAGC
TCGCGAACGTTGACACGGCGGGGATGCTGGCGCTGCCGGCGAAGCCATCCGCCGTTGGGCTCACCCACCGGGTCCGCCTCGCCCGCGACTATTACGTCCT
CCTCGATGGGAACGACTACTCCGTCCCCGGTTCATTGGCCGGTTCGTCGATATTCGGGCGTCGCTGGACGAGGTCGAGATCACCAGCAACGGGCAACCCG
CCGGCAGGCATCTCCGGTCGTTGCGGACAGGGCAAACGATCACGGCTCCCGAGCATGTCACACAGGCCGCGAAGCTCCGCGCTCACTACCAACGCCCGAA
ACCTTCCGGGGTCAGAGAACATCCAGATGGGCACCGCGTCCAGATTCGGGCGCTGTCGGACTACGACGCCCTGTTCGGCATCGACTTCACGACCACGACC
ACGACCGAATACGAGAAAGAAGCACGATGACCATCAAGAACAGCACGAGCGACGTTCCGATCCCGAAGACCAGCAAGCAGGTCTCCTCGAAGCTTGCCTA
TCTCGCCCGGGCGTTGAAGACGCCAACGATCGGGAGGGTTTGGGAAGACCTCGCCGGCCGAGCCAGAGACGAGAACTGGGCGCATGAGGAATACCTCGCC
GCGGTCCTGGAACGCCAGCTCGCGGACCGGGAATCAGCGGGCACCACGATGCGAATCCGGACCGCGCACTTCCCCGCGATCAAAACCTTGGAGGACTTCA
ACCTCGACCACCTCCCGTCGCTGCGCAAGGATCTTCTCGCACACCTGGCGACATCGACGTTCGTCGTGAAAGCGGAGAACGTGATCCTCCTCGGCCCTCC
CGGGATCGGGAAGACCCACCTCGCGATCGGTCTTGGCGTCAAGGCCACTCACTCCGGGCACAGTGTCTTGTTCGACACCGCGAACAACTGGATCGCCCGC
CTCGCGGCCGCTCACCACCAGGGACAGCTCGAAGCCGAACTGAAGAAGATCCGCCGTTACAAGCTCATCATCATCGACGAGATCGGCTACATCCCCTTCG
ACACCGACTCCGCGAACCTGTTCTTCCAACTCGTCGCGTCCCGTTACGAACAGGGCTCGATCATGGTCACCAGCAACCTGCCGTTCAGCCGCTGGGGCGA
GATCTTCGGAGACGACGTCGTCGCTTCAGCGATGATCGACCGCCTCGTCCACCACTCCGAAGTCCTCACCCTCAACGGAGACTCCTACCGCACCCACGGA
CGCCGCGACCTCATCAAACAGACCGACAAGAACTAAGCTCAACCAACGAAGAAGGGGTCCACCCCAAATCGGCGCAAAAGGGTCCATTCCAACTCGGCAT
CAACA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
231 bp76 aa539769+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLPSKQGDDLTSGMWSLLQRFGGVPRSLLWDREAAIGGLGKPTILAATFAGTLATRIKLAPARDPETKGVVERANR

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1131 bp376 aa10062136+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MGTTTPSPVHWPVRRYSGVAGRGRDHQQRATRRQASPVVADRANDHGSRACHTGREAPRSLPTPETFRGQRTSRWAPRPDSGAVGLRRPVRHRLHDHDHD
RIRERSTMTIKNSTSDVPIPKTSKQVSSKLAYLARALKTPTIGRVWEDLAGRARDENWAHEEYLAAVLERQLADRESAGTTMRIRTAHFPAIKTLEDFNL
DHLPSLRKDLLAHLATSTFVVKAENVILLGPPGIGKTHLAIGLGVKATHSGHSVLFDTANNWIARLAAAHHQGQLEAELKKIRRYKLIIIDEIGYIPFDT
DSANLFFQLVASRYEQGSIMVTSNLPFSRWGEIFGDDVVASAMIDRLVHHSEVLTLNGDSYRTHGRRDLIKQTDKN

 

Blast result :
Comments
There are 4 copies of ISLxx1 (coordinates : 2340215-2342419 ; 561383-559179 ; 399220-397016 ; 229479-227275 ).
ISLxx1 is 60%(ORF) aa similar to the first part of the ISMt3 transposase (ORF1)and 76%(ORF2) to ISMt3(ORF2).
References