ISLxx1
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006087 | ND | Leifsonia xyli | Leifsonia xyli subsp xyli CTCB07 |
DNA section
IS Length : 2205 bp
Ends
IR Length : 23
IRL : TGTTAACGCCAAAGTAGAATGGACCCCGTAGCGCCGACTTGGAATGGACC
IRR : TGTTGATGCCGAGTTGGAATGGACCCTTTTGCGCCGATTTGGGGTGGACC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
TGTTAACGCCAAAGTAGAATGGACCCCGTAGCGCCGACTTGGAATGGACCCCCTGGCTCCAGGCTAGGAGGGTGATTTCAGTGGATACGTGGGCAGAGAT
CCGGCGGTTGCATCGGGCGGAGAAGATCCCGATCAAGCAGATCGCGCGTGATCTTGGTGTCGGGCGGAACACGGTTCGGCGGGCGTTGCGGGGCGAGGAT
CCTCCGGACCGGTCGCGGGGTCCACGGGGCTCGAAATTTGATCCATTCGTGCCGCAGATCAGAGCGCTGCTGGTGGAGTATCCGCGGATGCCGGCGTCGG
TGATCGCGGAGCGGGTGGGATGGTCGTTCTCGTCGTCGTTGTTCCGTGACCGTGTCGCGGAACTGCGGCTGGACTATCTGGGTCTGGACCCGGCGGATCG
GCTCTCTTATGCGGCGGGCGAGGTGATCCAGTGCGATCTCTGGTTCCCCGAGACGCGGGTGGCGGTCGGCGACGGGCAGGACCGGATCTTGCCTGTGCTC
GTGATGTGTCCGGGTTCTCCCGTCGGATCGAGGCGGTCATGCTCCCGTCCAAGCAGGGCGACGACCTGACCTCGGGCATGTGGTCGCTGTTGCAGCGATT
CGGTGGGGTTCCGCGCTCGTTGCTCTGGGACAGGGAAGCCGCGATCGGTGGTCTCGGGAAGCCCACCATCCTCGCGGCGACGTTCGCGGGAACGCTCGCG
ACGAGGATCAAGCTCGCGCCCGCACGAGATCCGGAGACCAAAGGTGTTGTCGAGCGCGCGAACAGATGACTTGGAGACCTCGTTCCTGCCGGGACGGATC
TTTCAGAGCGTCGATGACTTCAACGAGCAGCTGACCGGATGGTTGGATACCCGCGCGAATCAGCGGAAGGTCCGCTCGATCGCGGCCCGCCCGACAGAGC
TCGCGAACGTTGACACGGCGGGGATGCTGGCGCTGCCGGCGAAGCCATCCGCCGTTGGGCTCACCCACCGGGTCCGCCTCGCCCGCGACTATTACGTCCT
CCTCGATGGGAACGACTACTCCGTCCCCGGTTCATTGGCCGGTTCGTCGATATTCGGGCGTCGCTGGACGAGGTCGAGATCACCAGCAACGGGCAACCCG
CCGGCAGGCATCTCCGGTCGTTGCGGACAGGGCAAACGATCACGGCTCCCGAGCATGTCACACAGGCCGCGAAGCTCCGCGCTCACTACCAACGCCCGAA
ACCTTCCGGGGTCAGAGAACATCCAGATGGGCACCGCGTCCAGATTCGGGCGCTGTCGGACTACGACGCCCTGTTCGGCATCGACTTCACGACCACGACC
ACGACCGAATACGAGAAAGAAGCACGATGACCATCAAGAACAGCACGAGCGACGTTCCGATCCCGAAGACCAGCAAGCAGGTCTCCTCGAAGCTTGCCTA
TCTCGCCCGGGCGTTGAAGACGCCAACGATCGGGAGGGTTTGGGAAGACCTCGCCGGCCGAGCCAGAGACGAGAACTGGGCGCATGAGGAATACCTCGCC
GCGGTCCTGGAACGCCAGCTCGCGGACCGGGAATCAGCGGGCACCACGATGCGAATCCGGACCGCGCACTTCCCCGCGATCAAAACCTTGGAGGACTTCA
ACCTCGACCACCTCCCGTCGCTGCGCAAGGATCTTCTCGCACACCTGGCGACATCGACGTTCGTCGTGAAAGCGGAGAACGTGATCCTCCTCGGCCCTCC
CGGGATCGGGAAGACCCACCTCGCGATCGGTCTTGGCGTCAAGGCCACTCACTCCGGGCACAGTGTCTTGTTCGACACCGCGAACAACTGGATCGCCCGC
CTCGCGGCCGCTCACCACCAGGGACAGCTCGAAGCCGAACTGAAGAAGATCCGCCGTTACAAGCTCATCATCATCGACGAGATCGGCTACATCCCCTTCG
ACACCGACTCCGCGAACCTGTTCTTCCAACTCGTCGCGTCCCGTTACGAACAGGGCTCGATCATGGTCACCAGCAACCTGCCGTTCAGCCGCTGGGGCGA
GATCTTCGGAGACGACGTCGTCGCTTCAGCGATGATCGACCGCCTCGTCCACCACTCCGAAGTCCTCACCCTCAACGGAGACTCCTACCGCACCCACGGA
CGCCGCGACCTCATCAAACAGACCGACAAGAACTAAGCTCAACCAACGAAGAAGGGGTCCACCCCAAATCGGCGCAAAAGGGTCCATTCCAACTCGGCAT
CAACA
CCGGCGGTTGCATCGGGCGGAGAAGATCCCGATCAAGCAGATCGCGCGTGATCTTGGTGTCGGGCGGAACACGGTTCGGCGGGCGTTGCGGGGCGAGGAT
CCTCCGGACCGGTCGCGGGGTCCACGGGGCTCGAAATTTGATCCATTCGTGCCGCAGATCAGAGCGCTGCTGGTGGAGTATCCGCGGATGCCGGCGTCGG
TGATCGCGGAGCGGGTGGGATGGTCGTTCTCGTCGTCGTTGTTCCGTGACCGTGTCGCGGAACTGCGGCTGGACTATCTGGGTCTGGACCCGGCGGATCG
GCTCTCTTATGCGGCGGGCGAGGTGATCCAGTGCGATCTCTGGTTCCCCGAGACGCGGGTGGCGGTCGGCGACGGGCAGGACCGGATCTTGCCTGTGCTC
GTGATGTGTCCGGGTTCTCCCGTCGGATCGAGGCGGTCATGCTCCCGTCCAAGCAGGGCGACGACCTGACCTCGGGCATGTGGTCGCTGTTGCAGCGATT
CGGTGGGGTTCCGCGCTCGTTGCTCTGGGACAGGGAAGCCGCGATCGGTGGTCTCGGGAAGCCCACCATCCTCGCGGCGACGTTCGCGGGAACGCTCGCG
ACGAGGATCAAGCTCGCGCCCGCACGAGATCCGGAGACCAAAGGTGTTGTCGAGCGCGCGAACAGATGACTTGGAGACCTCGTTCCTGCCGGGACGGATC
TTTCAGAGCGTCGATGACTTCAACGAGCAGCTGACCGGATGGTTGGATACCCGCGCGAATCAGCGGAAGGTCCGCTCGATCGCGGCCCGCCCGACAGAGC
TCGCGAACGTTGACACGGCGGGGATGCTGGCGCTGCCGGCGAAGCCATCCGCCGTTGGGCTCACCCACCGGGTCCGCCTCGCCCGCGACTATTACGTCCT
CCTCGATGGGAACGACTACTCCGTCCCCGGTTCATTGGCCGGTTCGTCGATATTCGGGCGTCGCTGGACGAGGTCGAGATCACCAGCAACGGGCAACCCG
CCGGCAGGCATCTCCGGTCGTTGCGGACAGGGCAAACGATCACGGCTCCCGAGCATGTCACACAGGCCGCGAAGCTCCGCGCTCACTACCAACGCCCGAA
ACCTTCCGGGGTCAGAGAACATCCAGATGGGCACCGCGTCCAGATTCGGGCGCTGTCGGACTACGACGCCCTGTTCGGCATCGACTTCACGACCACGACC
ACGACCGAATACGAGAAAGAAGCACGATGACCATCAAGAACAGCACGAGCGACGTTCCGATCCCGAAGACCAGCAAGCAGGTCTCCTCGAAGCTTGCCTA
TCTCGCCCGGGCGTTGAAGACGCCAACGATCGGGAGGGTTTGGGAAGACCTCGCCGGCCGAGCCAGAGACGAGAACTGGGCGCATGAGGAATACCTCGCC
GCGGTCCTGGAACGCCAGCTCGCGGACCGGGAATCAGCGGGCACCACGATGCGAATCCGGACCGCGCACTTCCCCGCGATCAAAACCTTGGAGGACTTCA
ACCTCGACCACCTCCCGTCGCTGCGCAAGGATCTTCTCGCACACCTGGCGACATCGACGTTCGTCGTGAAAGCGGAGAACGTGATCCTCCTCGGCCCTCC
CGGGATCGGGAAGACCCACCTCGCGATCGGTCTTGGCGTCAAGGCCACTCACTCCGGGCACAGTGTCTTGTTCGACACCGCGAACAACTGGATCGCCCGC
CTCGCGGCCGCTCACCACCAGGGACAGCTCGAAGCCGAACTGAAGAAGATCCGCCGTTACAAGCTCATCATCATCGACGAGATCGGCTACATCCCCTTCG
ACACCGACTCCGCGAACCTGTTCTTCCAACTCGTCGCGTCCCGTTACGAACAGGGCTCGATCATGGTCACCAGCAACCTGCCGTTCAGCCGCTGGGGCGA
GATCTTCGGAGACGACGTCGTCGCTTCAGCGATGATCGACCGCCTCGTCCACCACTCCGAAGTCCTCACCCTCAACGGAGACTCCTACCGCACCCACGGA
CGCCGCGACCTCATCAAACAGACCGACAAGAACTAAGCTCAACCAACGAAGAAGGGGTCCACCCCAAATCGGCGCAAAAGGGTCCATTCCAACTCGGCAT
CAACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
231 bp | 76 aa | 539 | 769 | + | No |
Chemistry : DDE
ORF sequence :
MLPSKQGDDLTSGMWSLLQRFGGVPRSLLWDREAAIGGLGKPTILAATFAGTLATRIKLAPARDPETKGVVERANR
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1131 bp | 376 aa | 1006 | 2136 | + | No |
AG : IS21 helper
ORF sequence :
MGTTTPSPVHWPVRRYSGVAGRGRDHQQRATRRQASPVVADRANDHGSRACHTGREAPRSLPTPETFRGQRTSRWAPRPDSGAVGLRRPVRHRLHDHDHD
RIRERSTMTIKNSTSDVPIPKTSKQVSSKLAYLARALKTPTIGRVWEDLAGRARDENWAHEEYLAAVLERQLADRESAGTTMRIRTAHFPAIKTLEDFNL
DHLPSLRKDLLAHLATSTFVVKAENVILLGPPGIGKTHLAIGLGVKATHSGHSVLFDTANNWIARLAAAHHQGQLEAELKKIRRYKLIIIDEIGYIPFDT
DSANLFFQLVASRYEQGSIMVTSNLPFSRWGEIFGDDVVASAMIDRLVHHSEVLTLNGDSYRTHGRRDLIKQTDKN
RIRERSTMTIKNSTSDVPIPKTSKQVSSKLAYLARALKTPTIGRVWEDLAGRARDENWAHEEYLAAVLERQLADRESAGTTMRIRTAHFPAIKTLEDFNL
DHLPSLRKDLLAHLATSTFVVKAENVILLGPPGIGKTHLAIGLGVKATHSGHSVLFDTANNWIARLAAAHHQGQLEAELKKIRRYKLIIIDEIGYIPFDT
DSANLFFQLVASRYEQGSIMVTSNLPFSRWGEIFGDDVVASAMIDRLVHHSEVLTLNGDSYRTHGRRDLIKQTDKN
Blast result :
Comments
There are 4 copies of ISLxx1 (coordinates : 2340215-2342419 ; 561383-559179 ; 399220-397016 ; 229479-227275 ).
ISLxx1 is 60%(ORF) aa similar to the first part of the ISMt3 transposase (ORF1)and 76%(ORF2) to ISMt3(ORF2).
ISLxx1 is 60%(ORF) aa similar to the first part of the ISMt3 transposase (ORF1)and 76%(ORF2) to ISMt3(ORF2).
References