ISLxx2
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006087 | ND | Leifsonia xyli | Leifsonia xyli subsp xyli CTCB07 |
DNA section
IS Length : 1427 bp
Ends
Left end : GATAGTGAGACTGTTCGTGCTGGTGTTCTCGGGGGTCCTGACCCTCACAGCGATGGACGCGCAAGGATGCTGGTGCCGCGTGTTCTCAGGGGTTCCTGAC
Right end : GCGAGGTCTACTTCCTCCTCAACCCCGGCATCAAACACATCGCCCCGAATACCAAACCGAGGAAAATCGCCGCTTGACTCTTAGGAGAGCATCCGCGGCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GATAGTGAGACTGTTCGTGCTGGTGTTCTCGGGGGTCCTGACCCTCACAGCGATGGACGCGCAAGGATGCTGGTGCCGCGTGTTCTCAGGGGTTCCTGAC
TCTCACGCCGATCGACATCTGCTGTCTTTCCACGGATCTGTCGGTCCCCTGAGAACATCCGGTGAGGCGTCACGCCTCACCGCCGGAGTGACTTAAGGAG
AGCCTGCGCCAACAGGTGCTCATCACTGTCTTGTCCGCCGGTCTGGTGGTGCGCGGTGCCGTTCCCCGCCCATGCGAACAGATCGGAGCACGACATGACC
ATCATCCCCGACACCGGCAAGCAACCTCAATCACGAACGTCGGTGTTCGCCGGCGTCGACACCCATAAGGAGATCCACGTCGCCGCGGTCGTCGACGAGA
CCGGGACAATCCTCGGAACCCACAGCTTCTCCACGACTCGCGCGGGTTATCGGGCCCTGCTGGCATGGGTGCGCAGTCAAGGCGCGTTGGTGCGGATCGG
AATCGAAGGGACGGGCTCCTACGGCGCTGGCCTCGCCCGGCATCTCGCGAAGAACGAGGTGACGATCCTCGAGGTCGACCGGCCGGATCGGTCAGACCGA
CGCCGGAAAGGGAAAGACGATGACCTGGACGCGATCAATGCCGCCCGCGCCGCACTGCACGAGCGCCGTACAACGATCCCGAAGTCCAAGGACGGCGCGG
TCGAGGCCCTGAGAATCCTGCGGGTTGCGCGAGCCCAGGCGGTCCGTGAACGCCGCAACACATTGCAGCTGCTGCGGATGTCGATCGTCGCCGCACCCGA
CGAGGTTCGTGACCAGGTACGCAACCTCACCCGTATGCAGCTGATCCGCCATCTCGCTGCCTGGCGTCCTGACACCTCGAACGCGACCGATCCCGTTGTC
GCCTACCGGGTCGCGTTGAAGTCGTTCGGCCGCCGCTATATCGAGCTCACCGACGAGATCGTCGACCTTGACGACCTGATCAACCCCATCGTCGAGTCCC
TCGCCCCCCAGCTACTCGAACGCGTCGGAATCGGCATCGAAGTCGCCGGGCAGATGCTCGTCACCGCAGGCGACAACCCCGAGAGCATGAAGTCCGAAGC
CGCGTTCGCGATGCTCTGCGGCGTCTCCCCGCTACCCGCGTCCTCCGGAATGACCCAGCGACACCGACTCAACCGTGGTGGCGACCGGCAAGCCAACCGT
GCCCTCCACCTCGCCGTGATCAGCAGGCTCCGGATCGACCCGAGAACGAAGGCCTACGCAGCGAAGAAGACCGCGGAAGGCCACTCGAAGATGGAGATCA
TCCGTTGCCTCAAGCGATACCTCGCCCGCGAGGTCTACTTCCTCCTCAACCCCGGCATCAAACACATCGCCCCGAATACCAAACCGAGGAAAATCGCCGC
TTGACTCTTAGGAGAGCATCCGCGGCA
TCTCACGCCGATCGACATCTGCTGTCTTTCCACGGATCTGTCGGTCCCCTGAGAACATCCGGTGAGGCGTCACGCCTCACCGCCGGAGTGACTTAAGGAG
AGCCTGCGCCAACAGGTGCTCATCACTGTCTTGTCCGCCGGTCTGGTGGTGCGCGGTGCCGTTCCCCGCCCATGCGAACAGATCGGAGCACGACATGACC
ATCATCCCCGACACCGGCAAGCAACCTCAATCACGAACGTCGGTGTTCGCCGGCGTCGACACCCATAAGGAGATCCACGTCGCCGCGGTCGTCGACGAGA
CCGGGACAATCCTCGGAACCCACAGCTTCTCCACGACTCGCGCGGGTTATCGGGCCCTGCTGGCATGGGTGCGCAGTCAAGGCGCGTTGGTGCGGATCGG
AATCGAAGGGACGGGCTCCTACGGCGCTGGCCTCGCCCGGCATCTCGCGAAGAACGAGGTGACGATCCTCGAGGTCGACCGGCCGGATCGGTCAGACCGA
CGCCGGAAAGGGAAAGACGATGACCTGGACGCGATCAATGCCGCCCGCGCCGCACTGCACGAGCGCCGTACAACGATCCCGAAGTCCAAGGACGGCGCGG
TCGAGGCCCTGAGAATCCTGCGGGTTGCGCGAGCCCAGGCGGTCCGTGAACGCCGCAACACATTGCAGCTGCTGCGGATGTCGATCGTCGCCGCACCCGA
CGAGGTTCGTGACCAGGTACGCAACCTCACCCGTATGCAGCTGATCCGCCATCTCGCTGCCTGGCGTCCTGACACCTCGAACGCGACCGATCCCGTTGTC
GCCTACCGGGTCGCGTTGAAGTCGTTCGGCCGCCGCTATATCGAGCTCACCGACGAGATCGTCGACCTTGACGACCTGATCAACCCCATCGTCGAGTCCC
TCGCCCCCCAGCTACTCGAACGCGTCGGAATCGGCATCGAAGTCGCCGGGCAGATGCTCGTCACCGCAGGCGACAACCCCGAGAGCATGAAGTCCGAAGC
CGCGTTCGCGATGCTCTGCGGCGTCTCCCCGCTACCCGCGTCCTCCGGAATGACCCAGCGACACCGACTCAACCGTGGTGGCGACCGGCAAGCCAACCGT
GCCCTCCACCTCGCCGTGATCAGCAGGCTCCGGATCGACCCGAGAACGAAGGCCTACGCAGCGAAGAAGACCGCGGAAGGCCACTCGAAGATGGAGATCA
TCCGTTGCCTCAAGCGATACCTCGCCCGCGAGGTCTACTTCCTCCTCAACCCCGGCATCAAACACATCGCCCCGAATACCAAACCGAGGAAAATCGCCGC
TTGACTCTTAGGAGAGCATCCGCGGCA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1110 bp | 369 aa | 295 | 1404 | + | No |
Chemistry : DEDD
ORF sequence :
MTIIPDTGKQPQSRTSVFAGVDTHKEIHVAAVVDETGTILGTHSFSTTRAGYRALLAWVRSQGALVRIGIEGTGSYGAGLARHLAKNEVTILEVDRPDRS
DRRRKGKDDDLDAINAARAALHERRTTIPKSKDGAVEALRILRVARAQAVRERRNTLQLLRMSIVAAPDEVRDQVRNLTRMQLIRHLAAWRPDTSNATDP
VVAYRVALKSFGRRYIELTDEIVDLDDLINPIVESLAPQLLERVGIGIEVAGQMLVTAGDNPESMKSEAAFAMLCGVSPLPASSGMTQRHRLNRGGDRQA
NRALHLAVISRLRIDPRTKAYAAKKTAEGHSKMEIIRCLKRYLAREVYFLLNPGIKHIAPNTKPRKIAA
DRRRKGKDDDLDAINAARAALHERRTTIPKSKDGAVEALRILRVARAQAVRERRNTLQLLRMSIVAAPDEVRDQVRNLTRMQLIRHLAAWRPDTSNATDP
VVAYRVALKSFGRRYIELTDEIVDLDDLINPIVESLAPQLLERVGIGIEVAGQMLVTAGDNPESMKSEAAFAMLCGVSPLPASSGMTQRHRLNRGGDRQA
NRALHLAVISRLRIDPRTKAYAAKKTAEGHSKMEIIRCLKRYLAREVYFLLNPGIKHIAPNTKPRKIAA
Blast result :
Comments
There are 4 copies of ISLxx2 (coordinates : 376418-377844 ; 1351723-1353149 ; 1428339-1429765 ; 2312342-2310916).
ISLxx2 is 44% aa similar to IS1547.
ISLxx2 is 44% aa similar to IS1547.
References