ISLxx2

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006087 ND Leifsonia xyli
Leifsonia xyli subsp xyli CTCB07
DNA section
IS Length : 1427 bp

Ends


Left end : GATAGTGAGACTGTTCGTGCTGGTGTTCTCGGGGGTCCTGACCCTCACAGCGATGGACGCGCAAGGATGCTGGTGCCGCGTGTTCTCAGGGGTTCCTGAC
Right end : GCGAGGTCTACTTCCTCCTCAACCCCGGCATCAAACACATCGCCCCGAATACCAAACCGAGGAAAATCGCCGCTTGACTCTTAGGAGAGCATCCGCGGCA

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GATAGTGAGACTGTTCGTGCTGGTGTTCTCGGGGGTCCTGACCCTCACAGCGATGGACGCGCAAGGATGCTGGTGCCGCGTGTTCTCAGGGGTTCCTGAC
TCTCACGCCGATCGACATCTGCTGTCTTTCCACGGATCTGTCGGTCCCCTGAGAACATCCGGTGAGGCGTCACGCCTCACCGCCGGAGTGACTTAAGGAG
AGCCTGCGCCAACAGGTGCTCATCACTGTCTTGTCCGCCGGTCTGGTGGTGCGCGGTGCCGTTCCCCGCCCATGCGAACAGATCGGAGCACGACATGACC
ATCATCCCCGACACCGGCAAGCAACCTCAATCACGAACGTCGGTGTTCGCCGGCGTCGACACCCATAAGGAGATCCACGTCGCCGCGGTCGTCGACGAGA
CCGGGACAATCCTCGGAACCCACAGCTTCTCCACGACTCGCGCGGGTTATCGGGCCCTGCTGGCATGGGTGCGCAGTCAAGGCGCGTTGGTGCGGATCGG
AATCGAAGGGACGGGCTCCTACGGCGCTGGCCTCGCCCGGCATCTCGCGAAGAACGAGGTGACGATCCTCGAGGTCGACCGGCCGGATCGGTCAGACCGA
CGCCGGAAAGGGAAAGACGATGACCTGGACGCGATCAATGCCGCCCGCGCCGCACTGCACGAGCGCCGTACAACGATCCCGAAGTCCAAGGACGGCGCGG
TCGAGGCCCTGAGAATCCTGCGGGTTGCGCGAGCCCAGGCGGTCCGTGAACGCCGCAACACATTGCAGCTGCTGCGGATGTCGATCGTCGCCGCACCCGA
CGAGGTTCGTGACCAGGTACGCAACCTCACCCGTATGCAGCTGATCCGCCATCTCGCTGCCTGGCGTCCTGACACCTCGAACGCGACCGATCCCGTTGTC
GCCTACCGGGTCGCGTTGAAGTCGTTCGGCCGCCGCTATATCGAGCTCACCGACGAGATCGTCGACCTTGACGACCTGATCAACCCCATCGTCGAGTCCC
TCGCCCCCCAGCTACTCGAACGCGTCGGAATCGGCATCGAAGTCGCCGGGCAGATGCTCGTCACCGCAGGCGACAACCCCGAGAGCATGAAGTCCGAAGC
CGCGTTCGCGATGCTCTGCGGCGTCTCCCCGCTACCCGCGTCCTCCGGAATGACCCAGCGACACCGACTCAACCGTGGTGGCGACCGGCAAGCCAACCGT
GCCCTCCACCTCGCCGTGATCAGCAGGCTCCGGATCGACCCGAGAACGAAGGCCTACGCAGCGAAGAAGACCGCGGAAGGCCACTCGAAGATGGAGATCA
TCCGTTGCCTCAAGCGATACCTCGCCCGCGAGGTCTACTTCCTCCTCAACCCCGGCATCAAACACATCGCCCCGAATACCAAACCGAGGAAAATCGCCGC
TTGACTCTTAGGAGAGCATCCGCGGCA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1110 bp369 aa2951404+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MTIIPDTGKQPQSRTSVFAGVDTHKEIHVAAVVDETGTILGTHSFSTTRAGYRALLAWVRSQGALVRIGIEGTGSYGAGLARHLAKNEVTILEVDRPDRS
DRRRKGKDDDLDAINAARAALHERRTTIPKSKDGAVEALRILRVARAQAVRERRNTLQLLRMSIVAAPDEVRDQVRNLTRMQLIRHLAAWRPDTSNATDP
VVAYRVALKSFGRRYIELTDEIVDLDDLINPIVESLAPQLLERVGIGIEVAGQMLVTAGDNPESMKSEAAFAMLCGVSPLPASSGMTQRHRLNRGGDRQA
NRALHLAVISRLRIDPRTKAYAAKKTAEGHSKMEIIRCLKRYLAREVYFLLNPGIKHIAPNTKPRKIAA

 

Blast result :
Comments
There are 4 copies of ISLxx2 (coordinates : 376418-377844 ; 1351723-1353149 ; 1428339-1429765 ; 2312342-2310916).
ISLxx2 is 44% aa similar to IS1547.
References