ISSbe1

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABIC01000019 ND Shewanella benthica
Shewanella benthica KT99
DNA section
IS Length : 1020 bp

Ends


IR Length : 21/26

IRL : CCTGATTACCCACTATCGTCAGCCATTGTTATACTGTAAGTAATCCCAGT
IRR : CCTGATTACCCATGAGGCTCAGCCATCTTTAACAGTCTATATGGCATAGG

Insertion site


Left flankDirect repeatRight flankDR Length
GCTTCTCGTTCATGAGCTTATGGCTTTGCCAT8

DNA sequence

CCTGATTACCCACTATCGTCAGCCATTGTTATACTGTAAGTAATCCCAGTTGTGTTTGAGGTGCAAAATGGCCAAAAACAAAGTGCAGTTCCAAAAAGGG
TATAGCTTAATTGAGCTATTTAAAAACTACGGCTCAGAAGAACAATGCTCCGCCGCCTTGTTCAACTGGAAGTGGCCACATGGCTTTCAATGCCCGGATT
GTGGGTCTTCAAAATACTGCTCGTTAAAAAGCAGAAAACTTTATCAATGCAATCATTGTCACCACCAAACTTCTCTGACCAGCAATACGATTTTTGCCAG
TACTAAACTTCCATTGCAAACGTGGTTTATTGCCATCTATCTGATAACACAATCAAAGACTGGTTTATCAGCATTAGCGTTAAAAAGGCAAATTGGCGTT
TCGTACAACACTGCCTGGAAAGTAAAGCAAAAAATCATGCAGGTCATGAAGGAACGTGATGATACTAAGCCACTATCTGGCATAGTCCAGCTCGATGATG
TGTATTGGGGTGGCGAACAGCATGGAGGTAAACCGGGAAGAGGTTCCAGCAACAAAACACCTTTCGTAGTAGCCATATCGTTGACCGATGATGGCCAGCC
ATTACACATGAATATGAATGTTGTGAATGGTTTTAAGACCCAAGAAATAAAGAACTGGGCAGATATGCATCTATCAGATGGGTGCACTGTAGTATCGGAC
GGATTGGCGTGTTTTCGAGCAGTGACAAAGTCCCACTGTGCTCACGTTAGTCTTGTTACTGGAGGAGGGGCGAGTTGTGTAGAGATTGAAGCTTTTCGTT
GGGTCAATACAATGATAGGTAATGTTAAAATGTCCCTGCACGGTGCTTACCACTCGATTAGCGCCGAGCATCTACCGCGATATCTTGGCGAGTTTTGTTA
TCGGTTCAATCGGCGTTTTAATCTAACTGAATTATTGCCACGATTTATGAGTGTGGCAGTTAGAACGCCACCTATGCCATATAGACTGTTAAAGATGGCT
GAGCCTCATGGGTAATCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
948 bp315 aa681015+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAKNKVQFQKGYSLIELFKNYGSEEQCSAALFNWKWPHGFQCPDCGSSKYCSLKSRKLYQCNHCHHQTSLTSNTIFASTKLPLQTWFIAIYLITQSKTGL
SALALKRQIGVSYNTAWKVKQKIMQVMKERDDTKPLSGIVQLDDVYWGGEQHGGKPGRGSSNKTPFVVAISLTDDGQPLHMNMNVVNGFKTQEIKNWADM
HLSDGCTVVSDGLACFRAVTKSHCAHVSLVTGGGASCVEIEAFRWVNTMIGNVKMSLHGAYHSISAEHLPRYLGEFCYRFNRRFNLTELLPRFMSVAVRT
PPMPYRLLKMAEPHG

 

Blast result :
Comments
ISSbe1 is 74% aa similar to ISLsp1.
References
1] Yayanos,A., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2007) Direct submission GenBank.