ISSbe1
- Family IS1595
- Group IS1595
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABIC01000019 | ND | Shewanella benthica | Shewanella benthica KT99 |
DNA section
IS Length : 1020 bp
Ends
IR Length : 21/26
IRL : CCTGATTACCCACTATCGTCAGCCATTGTTATACTGTAAGTAATCCCAGT
IRR : CCTGATTACCCATGAGGCTCAGCCATCTTTAACAGTCTATATGGCATAGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCTTCTCGTTCA | TGAGCTTA | TGGCTTTGCCAT | 8 |
DNA sequence
CCTGATTACCCACTATCGTCAGCCATTGTTATACTGTAAGTAATCCCAGTTGTGTTTGAGGTGCAAAATGGCCAAAAACAAAGTGCAGTTCCAAAAAGGG
TATAGCTTAATTGAGCTATTTAAAAACTACGGCTCAGAAGAACAATGCTCCGCCGCCTTGTTCAACTGGAAGTGGCCACATGGCTTTCAATGCCCGGATT
GTGGGTCTTCAAAATACTGCTCGTTAAAAAGCAGAAAACTTTATCAATGCAATCATTGTCACCACCAAACTTCTCTGACCAGCAATACGATTTTTGCCAG
TACTAAACTTCCATTGCAAACGTGGTTTATTGCCATCTATCTGATAACACAATCAAAGACTGGTTTATCAGCATTAGCGTTAAAAAGGCAAATTGGCGTT
TCGTACAACACTGCCTGGAAAGTAAAGCAAAAAATCATGCAGGTCATGAAGGAACGTGATGATACTAAGCCACTATCTGGCATAGTCCAGCTCGATGATG
TGTATTGGGGTGGCGAACAGCATGGAGGTAAACCGGGAAGAGGTTCCAGCAACAAAACACCTTTCGTAGTAGCCATATCGTTGACCGATGATGGCCAGCC
ATTACACATGAATATGAATGTTGTGAATGGTTTTAAGACCCAAGAAATAAAGAACTGGGCAGATATGCATCTATCAGATGGGTGCACTGTAGTATCGGAC
GGATTGGCGTGTTTTCGAGCAGTGACAAAGTCCCACTGTGCTCACGTTAGTCTTGTTACTGGAGGAGGGGCGAGTTGTGTAGAGATTGAAGCTTTTCGTT
GGGTCAATACAATGATAGGTAATGTTAAAATGTCCCTGCACGGTGCTTACCACTCGATTAGCGCCGAGCATCTACCGCGATATCTTGGCGAGTTTTGTTA
TCGGTTCAATCGGCGTTTTAATCTAACTGAATTATTGCCACGATTTATGAGTGTGGCAGTTAGAACGCCACCTATGCCATATAGACTGTTAAAGATGGCT
GAGCCTCATGGGTAATCAGG
TATAGCTTAATTGAGCTATTTAAAAACTACGGCTCAGAAGAACAATGCTCCGCCGCCTTGTTCAACTGGAAGTGGCCACATGGCTTTCAATGCCCGGATT
GTGGGTCTTCAAAATACTGCTCGTTAAAAAGCAGAAAACTTTATCAATGCAATCATTGTCACCACCAAACTTCTCTGACCAGCAATACGATTTTTGCCAG
TACTAAACTTCCATTGCAAACGTGGTTTATTGCCATCTATCTGATAACACAATCAAAGACTGGTTTATCAGCATTAGCGTTAAAAAGGCAAATTGGCGTT
TCGTACAACACTGCCTGGAAAGTAAAGCAAAAAATCATGCAGGTCATGAAGGAACGTGATGATACTAAGCCACTATCTGGCATAGTCCAGCTCGATGATG
TGTATTGGGGTGGCGAACAGCATGGAGGTAAACCGGGAAGAGGTTCCAGCAACAAAACACCTTTCGTAGTAGCCATATCGTTGACCGATGATGGCCAGCC
ATTACACATGAATATGAATGTTGTGAATGGTTTTAAGACCCAAGAAATAAAGAACTGGGCAGATATGCATCTATCAGATGGGTGCACTGTAGTATCGGAC
GGATTGGCGTGTTTTCGAGCAGTGACAAAGTCCCACTGTGCTCACGTTAGTCTTGTTACTGGAGGAGGGGCGAGTTGTGTAGAGATTGAAGCTTTTCGTT
GGGTCAATACAATGATAGGTAATGTTAAAATGTCCCTGCACGGTGCTTACCACTCGATTAGCGCCGAGCATCTACCGCGATATCTTGGCGAGTTTTGTTA
TCGGTTCAATCGGCGTTTTAATCTAACTGAATTATTGCCACGATTTATGAGTGTGGCAGTTAGAACGCCACCTATGCCATATAGACTGTTAAAGATGGCT
GAGCCTCATGGGTAATCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
948 bp | 315 aa | 68 | 1015 | + | No |
Chemistry : DDE
ORF sequence :
MAKNKVQFQKGYSLIELFKNYGSEEQCSAALFNWKWPHGFQCPDCGSSKYCSLKSRKLYQCNHCHHQTSLTSNTIFASTKLPLQTWFIAIYLITQSKTGL
SALALKRQIGVSYNTAWKVKQKIMQVMKERDDTKPLSGIVQLDDVYWGGEQHGGKPGRGSSNKTPFVVAISLTDDGQPLHMNMNVVNGFKTQEIKNWADM
HLSDGCTVVSDGLACFRAVTKSHCAHVSLVTGGGASCVEIEAFRWVNTMIGNVKMSLHGAYHSISAEHLPRYLGEFCYRFNRRFNLTELLPRFMSVAVRT
PPMPYRLLKMAEPHG
SALALKRQIGVSYNTAWKVKQKIMQVMKERDDTKPLSGIVQLDDVYWGGEQHGGKPGRGSSNKTPFVVAISLTDDGQPLHMNMNVVNGFKTQEIKNWADM
HLSDGCTVVSDGLACFRAVTKSHCAHVSLVTGGGASCVEIEAFRWVNTMIGNVKMSLHGAYHSISAEHLPRYLGEFCYRFNRRFNLTELLPRFMSVAVRT
PPMPYRLLKMAEPHG
Blast result :
Comments
ISSbe1 is 74% aa similar to ISLsp1.
References
1] Yayanos,A., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2007) Direct submission GenBank.