ISPpa1
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY177680 | Y | Paracoccus pantotrophus | Paracoccus pantotrophus DSM 11072 |
DNA section
IS Length : 1376 bp
Ends
IR Length : 26/39
IRL : GAGTAACGCGCGAAAGTTGGTGATGCTCTGAAGGGCGGCATATCAAGGCG
IRR : GAGATATGCGCAGAAGTTGGTGACGCCTGCTCAGGCGGCGGCTTGAAGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTAAGCACAA | CCAAAAAAG | CCAGTGATTC | 9 |
DNA sequence
GAGTAACGCGCGAAAGTTGGTGATGCTCTGAAGGGCGGCATATCAAGGCGGTGTTCAGACGCCGTCAATTCTCAGCCGAGAAAGGGATATGCCACATGTC
AGGCTCTACCATCACCCATCTGCCCGATCCATCGGGATTTTCCTCCGACCCGTTGACCGATCTGGTGCGCGACGGCGCGCGGCAGTTGATCCGTCAGGCT
GTCGAAGCCGAACTGGCGGTCCTGCTTGAACGCCACGCGGCCGACAGGCTGGATGACGGTCGCGCCCGGCTGGTCCGGCATGGACATCTGCCCGAGCGCG
AGGTGCTGACCGGCATCGGCCCGGTGCCGGTGAAGGTGCCTCGCGTTCGGGATCGCGGGGCGGGCGAGGACCGGATCAGTTTCACGCCAAGCATTTTGCC
GCGATACCTGCGCAAGACGAAATCGGTCGCAGAACTGCTGCCATGGCTTTATCTCAAGGGCGTGTCGACCGGGGATTTCAGCGAAGCCCTGGCGGCGCTG
CTCGGTCCGCAGGCGCAGGGTCTGTCGGCGGCGACGATCTCGCGGCTGAAAGCCGACTGGTGGAACGACTATGAAGCCTGGCAAAGGCGTGACCTCGGCA
TGCGCCGCTTCCTCTACATCTGGGCGGACGGGGTTTATTTCAAACCCCGGATGGCCGAAGAGAAACAGTGCGTTCTGGTGATCGTCGGTGCCGATGAATA
TGGCCGCAAGGAGCTGCTGGCCATGACAGACGGCTTCCGCGAAAGCACGCAGAGCTGGCGGGAATTGCTGCTCGATCTCAAACGCCGTGGCCTGAAACAG
GATCCGAAGCTTGCCATCGGTGACGGCGCTCTCGGCTTCTGGGCTGCCTTGCGTGAGGTGTTCGCTACGACACGGGAACAGCGCTGCTGGGTCCACAAGA
CCATGAACGTGCTCAACGCGCTGCCGAAATCGCTGCAGGTCAAGGCCAAGGGGCATCTGCATGACATCTGGCAGGCCGAGACGAAGGTCCAAGCCAATGC
CGCCTTCGATTATTTCATCGAAACCTATGGGGTCAAATACGAAAAGGCGCTCGCCAAGCTGGTCAAGGACCGCGATGCGCTGCTCACCTTCTATGACTTC
CCGGCCGAGCATTGGAAACACATCCGGACGTCAAACCCGATCGAAAGCACCTTCGCCACCGTCCGGCATCGGACCAGACGAACCAAGGGCTGCCTGAGCC
GCAAGACCGGGCTCGCCATGGCATTCCGACTGATGATGTCCGCGCAGAAGAAATGGCGCAAGCTCGACGGTCAGAACCGCCTGCCGGAAATCATCCAGGG
GATTGAATTCCGCGACGGCCTCCGCCACCTTCAAGCCGCCGCCTGAGCAGGCGTCACCAACTTCTGCGCATATCTC
AGGCTCTACCATCACCCATCTGCCCGATCCATCGGGATTTTCCTCCGACCCGTTGACCGATCTGGTGCGCGACGGCGCGCGGCAGTTGATCCGTCAGGCT
GTCGAAGCCGAACTGGCGGTCCTGCTTGAACGCCACGCGGCCGACAGGCTGGATGACGGTCGCGCCCGGCTGGTCCGGCATGGACATCTGCCCGAGCGCG
AGGTGCTGACCGGCATCGGCCCGGTGCCGGTGAAGGTGCCTCGCGTTCGGGATCGCGGGGCGGGCGAGGACCGGATCAGTTTCACGCCAAGCATTTTGCC
GCGATACCTGCGCAAGACGAAATCGGTCGCAGAACTGCTGCCATGGCTTTATCTCAAGGGCGTGTCGACCGGGGATTTCAGCGAAGCCCTGGCGGCGCTG
CTCGGTCCGCAGGCGCAGGGTCTGTCGGCGGCGACGATCTCGCGGCTGAAAGCCGACTGGTGGAACGACTATGAAGCCTGGCAAAGGCGTGACCTCGGCA
TGCGCCGCTTCCTCTACATCTGGGCGGACGGGGTTTATTTCAAACCCCGGATGGCCGAAGAGAAACAGTGCGTTCTGGTGATCGTCGGTGCCGATGAATA
TGGCCGCAAGGAGCTGCTGGCCATGACAGACGGCTTCCGCGAAAGCACGCAGAGCTGGCGGGAATTGCTGCTCGATCTCAAACGCCGTGGCCTGAAACAG
GATCCGAAGCTTGCCATCGGTGACGGCGCTCTCGGCTTCTGGGCTGCCTTGCGTGAGGTGTTCGCTACGACACGGGAACAGCGCTGCTGGGTCCACAAGA
CCATGAACGTGCTCAACGCGCTGCCGAAATCGCTGCAGGTCAAGGCCAAGGGGCATCTGCATGACATCTGGCAGGCCGAGACGAAGGTCCAAGCCAATGC
CGCCTTCGATTATTTCATCGAAACCTATGGGGTCAAATACGAAAAGGCGCTCGCCAAGCTGGTCAAGGACCGCGATGCGCTGCTCACCTTCTATGACTTC
CCGGCCGAGCATTGGAAACACATCCGGACGTCAAACCCGATCGAAAGCACCTTCGCCACCGTCCGGCATCGGACCAGACGAACCAAGGGCTGCCTGAGCC
GCAAGACCGGGCTCGCCATGGCATTCCGACTGATGATGTCCGCGCAGAAGAAATGGCGCAAGCTCGACGGTCAGAACCGCCTGCCGGAAATCATCCAGGG
GATTGAATTCCGCGACGGCCTCCGCCACCTTCAAGCCGCCGCCTGAGCAGGCGTCACCAACTTCTGCGCATATCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1251 bp | 416 aa | 96 | 1346 | + | No |
Chemistry : DDE
ORF sequence :
MSGSTITHLPDPSGFSSDPLTDLVRDGARQLIRQAVEAELAVLLERHAADRLDDGRARLVRHGHLPEREVLTGIGPVPVKVPRVRDRGAGEDRISFTPSI
LPRYLRKTKSVAELLPWLYLKGVSTGDFSEALAALLGPQAQGLSAATISRLKADWWNDYEAWQRRDLGMRRFLYIWADGVYFKPRMAEEKQCVLVIVGAD
EYGRKELLAMTDGFRESTQSWRELLLDLKRRGLKQDPKLAIGDGALGFWAALREVFATTREQRCWVHKTMNVLNALPKSLQVKAKGHLHDIWQAETKVQA
NAAFDYFIETYGVKYEKALAKLVKDRDALLTFYDFPAEHWKHIRTSNPIESTFATVRHRTRRTKGCLSRKTGLAMAFRLMMSAQKKWRKLDGQNRLPEII
QGIEFRDGLRHLQAAA
LPRYLRKTKSVAELLPWLYLKGVSTGDFSEALAALLGPQAQGLSAATISRLKADWWNDYEAWQRRDLGMRRFLYIWADGVYFKPRMAEEKQCVLVIVGAD
EYGRKELLAMTDGFRESTQSWRELLLDLKRRGLKQDPKLAIGDGALGFWAALREVFATTREQRCWVHKTMNVLNALPKSLQVKAKGHLHDIWQAETKVQA
NAAFDYFIETYGVKYEKALAKLVKDRDALLTFYDFPAEHWKHIRTSNPIESTFATVRHRTRRTKGCLSRKTGLAMAFRLMMSAQKKWRKLDGQNRLPEII
QGIEFRDGLRHLQAAA
Blast result :
Comments
References
1]Bartosik,D., Sochacka,M. and Baj,J. (2003) J. Bacteriol. 185 (13), 3753-3763
2]Bartosik,D.(2003) Direct submission.
2]Bartosik,D.(2003) Direct submission.