ISFtu5

  • Family IS4
  • Group IS10
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Francisella tularensis
Francisella tularensis subspecies tularensis SchuS4
DNA section
IS Length : 1157 bp

Ends


IR Length : 12

IRL : CTCTGTACACGAGGAAAGAGTTGAAAAAAGCTGACTAAAGCCATATATAC
IRR : CTCTGTACACGATGATTTTTTCATAATTTAAGTTCTTTAGTTATTTTGCT

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

CTCTGTACACGAGGAAAGAGTTGAAAAAAGCTGACTAAAGCCATATATACTTAATTATTGGAGATAAATGAAAAGTACGTTAATCAGCTAAAACGAAGTT
TATCGAAAATATTTAATTGGCATAAGTCAAGCATAGACTGCTTTAGCAATATATTGCTAGGCTTACTATCAGCACAAACAATTAATTTGTCAAAGATAGC
GATTCACTTTAAAAATAATAATAAAATAGCCTCCAACTATAGGCGAATACAAAGTTTTCTAAAAGATATGAAGATTGATTTTGATGCTATAACTGAATTT
AATGTCCGTCAACCTCTATCCCAAAAAAGTAAATTTAACTTTATACCAGATAGAACAAATTGGCAATTTGTTAAAAATAATATAAATATTTTAGTATTTT
CAGCCGTATATGAAGTTATTGCAATACCTTTATATTATAAGCTAGATCATAGAGGTAATAGCGACTCACAAACTCGTATAGATCTAGTTAAAAAGTTTGT
AAATAAATTTGGTAAAGAGTGTATAGGCAGTATATTAGGTGATAGAGAGTTTGGCTTACTTGGCTAGACTCACAGCAAATAAGTTACATTATTAGAATTC
GCAATAATTCTGTGATCATGGACTCAAATGCCGGAGAATCTAAAGTATCCAAATTATTTTATAGTACAGGTATTCACGAACATAAAAATCTTACCAAGAT
ACAACAACTTGGAGATATTGATGTTTATCTGGTACTAGAACTAATGATGGTGAGTTACTTATTGTTGCTAGCAACTATTGCTATGTCGAGCAGCTTATTC
CCACATATGGGTTGAGATGGGAAATTGAAAACTTATTTTAAGCTTTAAAAGATAGAGGATTTAATCTTGAAGATACACACCTAACTGATAAAAATAAAAT
AGCAAAGATGCTAGGTCTATTATCTTTAGCTTTTGTTTGGGCACATAAGGTTGGGAGAGTAAGGATATGTTTATTCAAAAAACATGTCGTAAAAAGCATG
GAAGACCACAAAACTCATACTTTAGATATGGGTTAGATATGATTGCTAATGCTATCAATAAAATATCTGTTTCAAGCTATGACTTTAAGTTATGCTTGAA
AATATTCAGCAAAATAACTAAAGAACTTAAATTATGAAAAAATCATCGTGTACAGAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
976 bp327 aa581033+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEINEKYVNQLKRSLSKIFNWHKSSIDCFSNILLGLLSAQTINLSKIAIHFKNNNKIASNYRRIQSFLKDMKIDFDAITEFNVRQPLSQKSKFNFIPDRT
NWQFVKNNINILVFSAVYEVIAIPLYYKLDHRGNSDSQTRIDLVKKFVNKFGKECIGSILGDREFWLTWLDSQQISYIIRIRNNSVIMDSNAGESKVSKL
FYSTGIHEHKNLTKIQQLGDIDVYLVLELMMVSYLLLLATIAMSSSLFPHMGGLRWEIENLF*ALKDRGFNLEDTHLTDKNKIAKMLGLLSLAFVWAHKV
GRVRICLFKKHVVKSMEDHKTHTLDMG

 

Blast result :
Comments
ORF contains two frameshifts and a stop codon
ISFtu5 is 57% aa similar to ISAba1.
References