ISSth1

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY376237 Y Streptococcus thermophilus
Streptococcus thermophilus
DNA section
IS Length : 1416 bp

Ends


IR Length : 25

IRL : GGCTCTATAATTTCTGTAGTGGGTAAATCCTCTATGGAGATTATGGAGCC
IRR : GGCTCTTTGTCAACTGTAGTGGGTAGATGAAAAGCTAAATTCTTGAGAGG

Insertion site


Left flankDirect repeatRight flankDR Length
ATGTATATAGCGTTTTCCTTAGAACAAG8

DNA sequence

GGCTCTATAATTTCTGTAGTGGGTAAATCCTCTATGGAGATTATGGAGCCTTTTTGATTGTAGAAAAAAAGTCCCATATGACCTATAATGAAAAGCGACT
AAACCATCATTTTAGAAAGACTCATATGGAACAACTAAATCTTATCACAAATTTTCTTGGAATAAAAGACAAAAATATTATCATCACTAATGAATACGAT
ATGGGAATGCACAAAGAACTTCACGGTTACTTGGATTACGAGTCTCCTAAATGTCCTGCCTGCAAGGGACAGATGGGCAAATACGACTTCCAGAAAGCCT
CTAAAATCCCGTATCTGGAGTGTGCTGGCTACCGAACTCTCATTCGCCTGAAAAAGCGCCGTTTCAAGTGTAAGGAGTGCGGAAAAATGGCTGTCGCGGA
AACTTCTCTGGTCAAGAAGAATCACCAAATCGCAACCGTCGTCTATCAGAAAATCGCTCAATTGCTCATTGAAAAACAGTCTATGACCGACATTGCCAAG
CGCCTTGCCGTCTCTACCTCAACCGTCAGTCGCAAGCTAAATGAGTTCCAATTTAAAACCGACTGGAATTGGCTGCCTGAGAATATGAGCTGGGATGAGT
ACGGCTTCAAGAAGGGAAAAATGAGTTTCATCGCTCAGGATTTCGACTCATTAAAAGTCATCACAATCCTCGACGGACGCACGCAAGCAACGATTAGAAA
CCACTTCCTACGCTATTCCAGACAGGATAGAAATCGCGTTAAAGTCATCACTATGGACATGTTTAGCCCTTATTACGACATCGCCAGAAAATTATTCCCT
AACGCTAAGATTGTCCTTGATCGCTTTCACATTGTGCAACACCTTAGTCGTGCTATGAACCGCGTCCGCATTCAAATCATGAACCATTTGGACCGTCAGT
CACAGGAATATCGTGCCCTGAAACGCTACTGGAAACTGATCCAACAAGATAGTCGCAAACTCAACGATAAACGCTTTTATCGTCCGACTTTTCGTGCGCA
TTTAACCAACAAGGAAATCCTAGAAAAGCTACTGTCATACTCTCAAGAACTGAGAGAACATTATGAACTCTACCAACTTTTACTTTTCCATTTCCAAGAG
AAGAACTCGGACCATTTCTTTGACCTCATTGAAGAGACGAGTTCCAGCGTACACCCTATCTTTCAGACAGTTTTTAGAACTTTTTTGAAAGATAAAGACA
AGATTATCAACGCCCTCGAACTGCCGTATTCAAACGCAAAACTGGAAGCAACGAACAATCTCATCAAGGTCATTAAGCGAAATGCCTTTGGCTTCAGGAA
CTTTGAAAACTTTAAGAAACGGATTTTGATGGCAGTAAATATTAAAAAAGAGAAGACCAAACTGGTCCTCTCAAGAATTTAGCTTTTCATCTACCCACTA
CAGTTGACAAAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1305 bp434 aa781382+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MTYNEKRLNHHFRKTHMEQLNLITNFLGIKDKNIIITNEYDMGMHKELHGYLDYESPKCPACKGQMGKYDFQKASKIPYLECAGYRTLIRLKKRRFKCKE
CGKMAVAETSLVKKNHQIATVVYQKIAQLLIEKQSMTDIAKRLAVSTSTVSRKLNEFQFKTDWNWLPENMSWDEYGFKKGKMSFIAQDFDSLKVITILDG
RTQATIRNHFLRYSRQDRNRVKVITMDMFSPYYDIARKLFPNAKIVLDRFHIVQHLSRAMNRVRIQIMNHLDRQSQEYRALKRYWKLIQQDSRKLNDKRF
YRPTFRAHLTNKEILEKLLSYSQELREHYELYQLLLFHFQEKNSDHFFDLIEETSSSVHPIFQTVFRTFLKDKDKIINALELPYSNAKLEATNNLIKVIK
RNAFGFRNFENFKKRILMAVNIKKEKTKLVLSRI

 

Blast result :
Comments
ISSth1 is 83% aa similar to IS1167A.
References
1] C. Monnet, S. Pernoud, A. Sepulchre, C. fremaux, G. Corrieu.(2004) J. Dairy Sci. 87, 1634-1640