ISSth1
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY376237 | Y | Streptococcus thermophilus | Streptococcus thermophilus |
DNA section
IS Length : 1416 bp
Ends
IR Length : 25
IRL : GGCTCTATAATTTCTGTAGTGGGTAAATCCTCTATGGAGATTATGGAGCC
IRR : GGCTCTTTGTCAACTGTAGTGGGTAGATGAAAAGCTAAATTCTTGAGAGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATGTATATAG | CGTTTTCC | TTAGAACAAG | 8 |
DNA sequence
GGCTCTATAATTTCTGTAGTGGGTAAATCCTCTATGGAGATTATGGAGCCTTTTTGATTGTAGAAAAAAAGTCCCATATGACCTATAATGAAAAGCGACT
AAACCATCATTTTAGAAAGACTCATATGGAACAACTAAATCTTATCACAAATTTTCTTGGAATAAAAGACAAAAATATTATCATCACTAATGAATACGAT
ATGGGAATGCACAAAGAACTTCACGGTTACTTGGATTACGAGTCTCCTAAATGTCCTGCCTGCAAGGGACAGATGGGCAAATACGACTTCCAGAAAGCCT
CTAAAATCCCGTATCTGGAGTGTGCTGGCTACCGAACTCTCATTCGCCTGAAAAAGCGCCGTTTCAAGTGTAAGGAGTGCGGAAAAATGGCTGTCGCGGA
AACTTCTCTGGTCAAGAAGAATCACCAAATCGCAACCGTCGTCTATCAGAAAATCGCTCAATTGCTCATTGAAAAACAGTCTATGACCGACATTGCCAAG
CGCCTTGCCGTCTCTACCTCAACCGTCAGTCGCAAGCTAAATGAGTTCCAATTTAAAACCGACTGGAATTGGCTGCCTGAGAATATGAGCTGGGATGAGT
ACGGCTTCAAGAAGGGAAAAATGAGTTTCATCGCTCAGGATTTCGACTCATTAAAAGTCATCACAATCCTCGACGGACGCACGCAAGCAACGATTAGAAA
CCACTTCCTACGCTATTCCAGACAGGATAGAAATCGCGTTAAAGTCATCACTATGGACATGTTTAGCCCTTATTACGACATCGCCAGAAAATTATTCCCT
AACGCTAAGATTGTCCTTGATCGCTTTCACATTGTGCAACACCTTAGTCGTGCTATGAACCGCGTCCGCATTCAAATCATGAACCATTTGGACCGTCAGT
CACAGGAATATCGTGCCCTGAAACGCTACTGGAAACTGATCCAACAAGATAGTCGCAAACTCAACGATAAACGCTTTTATCGTCCGACTTTTCGTGCGCA
TTTAACCAACAAGGAAATCCTAGAAAAGCTACTGTCATACTCTCAAGAACTGAGAGAACATTATGAACTCTACCAACTTTTACTTTTCCATTTCCAAGAG
AAGAACTCGGACCATTTCTTTGACCTCATTGAAGAGACGAGTTCCAGCGTACACCCTATCTTTCAGACAGTTTTTAGAACTTTTTTGAAAGATAAAGACA
AGATTATCAACGCCCTCGAACTGCCGTATTCAAACGCAAAACTGGAAGCAACGAACAATCTCATCAAGGTCATTAAGCGAAATGCCTTTGGCTTCAGGAA
CTTTGAAAACTTTAAGAAACGGATTTTGATGGCAGTAAATATTAAAAAAGAGAAGACCAAACTGGTCCTCTCAAGAATTTAGCTTTTCATCTACCCACTA
CAGTTGACAAAGAGCC
AAACCATCATTTTAGAAAGACTCATATGGAACAACTAAATCTTATCACAAATTTTCTTGGAATAAAAGACAAAAATATTATCATCACTAATGAATACGAT
ATGGGAATGCACAAAGAACTTCACGGTTACTTGGATTACGAGTCTCCTAAATGTCCTGCCTGCAAGGGACAGATGGGCAAATACGACTTCCAGAAAGCCT
CTAAAATCCCGTATCTGGAGTGTGCTGGCTACCGAACTCTCATTCGCCTGAAAAAGCGCCGTTTCAAGTGTAAGGAGTGCGGAAAAATGGCTGTCGCGGA
AACTTCTCTGGTCAAGAAGAATCACCAAATCGCAACCGTCGTCTATCAGAAAATCGCTCAATTGCTCATTGAAAAACAGTCTATGACCGACATTGCCAAG
CGCCTTGCCGTCTCTACCTCAACCGTCAGTCGCAAGCTAAATGAGTTCCAATTTAAAACCGACTGGAATTGGCTGCCTGAGAATATGAGCTGGGATGAGT
ACGGCTTCAAGAAGGGAAAAATGAGTTTCATCGCTCAGGATTTCGACTCATTAAAAGTCATCACAATCCTCGACGGACGCACGCAAGCAACGATTAGAAA
CCACTTCCTACGCTATTCCAGACAGGATAGAAATCGCGTTAAAGTCATCACTATGGACATGTTTAGCCCTTATTACGACATCGCCAGAAAATTATTCCCT
AACGCTAAGATTGTCCTTGATCGCTTTCACATTGTGCAACACCTTAGTCGTGCTATGAACCGCGTCCGCATTCAAATCATGAACCATTTGGACCGTCAGT
CACAGGAATATCGTGCCCTGAAACGCTACTGGAAACTGATCCAACAAGATAGTCGCAAACTCAACGATAAACGCTTTTATCGTCCGACTTTTCGTGCGCA
TTTAACCAACAAGGAAATCCTAGAAAAGCTACTGTCATACTCTCAAGAACTGAGAGAACATTATGAACTCTACCAACTTTTACTTTTCCATTTCCAAGAG
AAGAACTCGGACCATTTCTTTGACCTCATTGAAGAGACGAGTTCCAGCGTACACCCTATCTTTCAGACAGTTTTTAGAACTTTTTTGAAAGATAAAGACA
AGATTATCAACGCCCTCGAACTGCCGTATTCAAACGCAAAACTGGAAGCAACGAACAATCTCATCAAGGTCATTAAGCGAAATGCCTTTGGCTTCAGGAA
CTTTGAAAACTTTAAGAAACGGATTTTGATGGCAGTAAATATTAAAAAAGAGAAGACCAAACTGGTCCTCTCAAGAATTTAGCTTTTCATCTACCCACTA
CAGTTGACAAAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1305 bp | 434 aa | 78 | 1382 | + | No |
Chemistry : Unknow
ORF sequence :
MTYNEKRLNHHFRKTHMEQLNLITNFLGIKDKNIIITNEYDMGMHKELHGYLDYESPKCPACKGQMGKYDFQKASKIPYLECAGYRTLIRLKKRRFKCKE
CGKMAVAETSLVKKNHQIATVVYQKIAQLLIEKQSMTDIAKRLAVSTSTVSRKLNEFQFKTDWNWLPENMSWDEYGFKKGKMSFIAQDFDSLKVITILDG
RTQATIRNHFLRYSRQDRNRVKVITMDMFSPYYDIARKLFPNAKIVLDRFHIVQHLSRAMNRVRIQIMNHLDRQSQEYRALKRYWKLIQQDSRKLNDKRF
YRPTFRAHLTNKEILEKLLSYSQELREHYELYQLLLFHFQEKNSDHFFDLIEETSSSVHPIFQTVFRTFLKDKDKIINALELPYSNAKLEATNNLIKVIK
RNAFGFRNFENFKKRILMAVNIKKEKTKLVLSRI
CGKMAVAETSLVKKNHQIATVVYQKIAQLLIEKQSMTDIAKRLAVSTSTVSRKLNEFQFKTDWNWLPENMSWDEYGFKKGKMSFIAQDFDSLKVITILDG
RTQATIRNHFLRYSRQDRNRVKVITMDMFSPYYDIARKLFPNAKIVLDRFHIVQHLSRAMNRVRIQIMNHLDRQSQEYRALKRYWKLIQQDSRKLNDKRF
YRPTFRAHLTNKEILEKLLSYSQELREHYELYQLLLFHFQEKNSDHFFDLIEETSSSVHPIFQTVFRTFLKDKDKIINALELPYSNAKLEATNNLIKVIK
RNAFGFRNFENFKKRILMAVNIKKEKTKLVLSRI
Blast result :
Comments
ISSth1 is 83% aa similar to IS1167A.
References
1] C. Monnet, S. Pernoud, A. Sepulchre, C. fremaux, G. Corrieu.(2004) J. Dairy Sci. 87, 1634-1640