ISMbov3

  • Family IS1634
  • Group
MGE type ISRelated element(s) :
Isoform IS1634Synonym(s)
Accession numberTranspositionOriginHost
AJ829923 ND Mycoplasma bovis
Mycoplasma bovis
DNA section
IS Length : 1873 bp

Ends


IR Length : 13

IRL : CCTACGTTTCCCACTTAGTCGCGAAAACACTCAGTTTTCGGCGGCTATAT
IRR : CCTACGTTTCCCAGTTTAAGCATAAAACAAGAAAACATAATTATGTAAAT

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

CCTACGTTTCCCACTTAGTCGCGAAAACACTCAGTTTTCGGCGGCTATATTTTTTTTATAAAAAAAATATAATTTATTATACTTTTATGCTTAAATATGA
TATAATAAAAACATGAAGAAGTCGAAAAACGATGCAAAAGACAATGAAGAACATCAATAGCAAGAGTCAAAAAAGGTGAATACTTATCAATTGGAGTGCC
AAGACCAGATAACAAAGGTTTTGTATACAGATTAGGATATGGTTATTTGCATGAATTAAAACAATATCACGATGATCCGCTAACAATTATCAAAGCAATT
ATTGCAAACTTTCCATTGTCTTGAACAAAAGAACAAGCAAGAACTAAATTAGATGAGATTTTTAAAGAGAAAAAAGAGACCAAAAAAGAAGTTTTAGAAA
GGTTTAAAGGCTACGAAGTAGTTGAAAAACTATTTGATTATTTCAATATTTTTAACGATTGTTCTCCCACAAAATCGACAACATTAAAAGATGTTGTTTT
ACAGTTGATTTATCAAAGAATTAAAAATCCAATAAGTGTTTTTAACACTTATATGACAGCAAAAAAAGAAAAAATAGACACTTATTCAAAAAATTCATTT
TATAGATCATTAGACTATATAGCAAAAAACAAAGATGAAATTTTAAGAAATTTAAATGCAAAAATTTGTGCAAATACTAATAGAAAAATTGATGTATTAT
GATTTGATGCAACAACTACTTATTTTGAAACATTTTCTCGTGAAGGTTATAAAAAACCTGGCTATTCAAAAGATGGAAAATTTAAAGAAGACCAGATTGT
TATAGGTATGGCAACTGATGAAAATGGGATACCGTTACACTACAAAATATTTCCAGGAAATGTTACTGATTCAAATACTTTCATACCATTTATGCTTGAA
ATTGCAGATATTTATGAAGTTAACAATGTAACTATAATTGCTGACAAAGGAATGAGCGTTAATAGAAATATTAGATTTTTAGAATCTAAGAATTGAAAAT
ACATAATCTCATATAGAATGAAAGCTGGAAGCAAACAATTTAAAGAGTATGTATTAGATGAAAAAGATTATGTAAATGATGGTGGTTTGATATACAAAAC
TCGTGATATTGCATCTTCATACAATAAAAAAAGAATTAATGGACATTTTAGAAGACAAATAATTAGTTTTAGTCAAAAACGAGCAACTAAAGACAAAAAC
GATAGAGACATTTTAATTCAAAATTTCACTAAGAAAATGAATAAAGATAATCTTGTTTCTTGTGATGATCTAGCGGGATCTAAAAAATATAGATTCTTCA
AGCCTATAAACAAAGGTGCATTTTATGAACTTGACATAGAAAAAATACAAGAAGATCAAAAATATGATGGATACTATGTTTACGAAACAAACAGAACAGA
TTTATCAGTAAAAGAAGTTATTAATTTATATTCAAAACAATGACAAATTGAGTCTAATTTCAAGACATTAAAAGGTAAATTATCTCTTCGTCCAATGTAT
TTATCAACTTGAAACCATATTGTTGGTTACATTTGCTTATGTTTCATTTCATTAGTGTTTTTAAACTACATCATCTACATTCTAAATTCAAAATTAGGAC
TGACTGGAAAAAGTAAAATCACTGAGCATAAAGTGATTAATGTTATCAAAGAAGTTAAAGAAATTGAAGTATTTGTAAATAAACAAAAAATCGAAACTAT
ACAAGTTTATAACGACGAGTTACAAGAAAGTTGGCAAACTTATCAAATATTATTAGAACTTTTAACAAAAGAAAAAGTCACTTAGACATTACATTATAAA
AAACATAACTTATGAAATCAAAAATTTACATAATTATGTTTTCTTGTTTTATGCTTAAACTGGGAAACGTAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1602 bp533 aa1841785+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSIGVPRPDNKGFVYRLGYGYLHELKQYHDDPLTIIKAIIANFPLSWTKEQARTKLDEIFKEKKETKKEVLERFKGYEVVEKLFDYFNIFNDCSPTKSTT
LKDVVLQLIYQRIKNPISVFNTYMTAKKEKIDTYSKNSFYRSLDYIAKNKDEILRNLNAKICANTNRKIDVLWFDATTTYFETFSREGYKKPGYSKDGKF
KEDQIVIGMATDENGIPLHYKIFPGNVTDSNTFIPFMLEIADIYEVNNVTIIADKGMSVNRNIRFLESKNWKYIISYRMKAGSKQFKEYVLDEKDYVNDG
GLIYKTRDIASSYNKKRINGHFRRQIISFSQKRATKDKNDRDILIQNFTKKMNKDNLVSCDDLAGSKKYRFFKPINKGAFYELDIEKIQEDQKYDGYYVY
ETNRTDLSVKEVINLYSKQWQIESNFKTLKGKLSLRPMYLSTWNHIVGYICLCFISLVFLNYIIYILNSKLGLTGKSKITEHKVINVIKEVKEIEVFVNK
QKIETIQVYNDELQESWQTYQILLELLTKEKVT

 

Blast result :
Comments
ISMbov3 is 97.7% aa identical and 98.5% aa similar to IS1634
References
1] Vilei E.M (2004) Direct submission GenBank