ISCps1
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Colwellia psychroerythraea | Colwellia psychroerythraea 34H |
DNA section
IS Length : 1347 bp
Ends
IR Length : 12
IRL : caatgtATGGACTCCTCCAACCTATGAGCTAGGTTTATTAGTGTCTACCA
IRR : ---tatATGGACTCCTCCTTTTCATCAAGCATCCCATTCTTAGATTAAGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
CAATGTATGGACTCCTCCAACCTATGAGCTAGGTTTATTAGTGTCTACCAAACACAAATTAAGGATCCATACATGAACAAAGTTAATACTATTGGCGTAG
ATTTAGCCAAAAATGTTATTCAAGTTTCTGTTCTTTCGCCTTTAAATAAAGAACTAACAAACAAAGAGCTTCCTCGAACAAAGTTCGCCGAGTTCCTGGC
TAAACAGCCTATAAGTCTTGTGGCGTTCGAAGCATGCTCAACAGCACATCATTGGGCGAGATTAGCGAGAAGTTATGGGCATCGGGTAAAAATCCTGCCC
GCAAAGGTAGTATCATCGTTTCGCCAAGGTCACAAAACTGATAAAAACGATGCACTTGCTGTCGCTGAAGCCGCTAACAGACCTAATGTAAAAGAAGCAC
CATTGAAAGAACTTGAGCAGCAAGGTATGCAGTCAATCCAGCGTTCAAGAGAGCTACTGGTTCAAAATAAAACGTGTTTATCAAATCATATTCGTGGTTT
ATTAATGGAATTTGGCGTATTTATTCCTAAAGGTTTCGCTTCTCTTTTTAAAAATATACCTGACATTTTGGAAGACGGTGAAAATGATATACCAGATATG
TTCAGAGCTACACTTAATCTAATGTATCAACGTTTACTTGACCTTCGTGATGATGTTGGATTGTTGGATGAACAAGTTAAACAATTAGTAAAAAACAATG
AAGCATGCTCGAATCTCACTAAAATGGAAGGCGTTGGGCCAATTAGCGCCATCCTACTATTTTCGACATTAGGTACTGGCGACGCGTTTAAAAATGGTCG
TGAGTTCTCAGCCTATATTGGTTTAACACCAAAGCAACACAGTAGTGGTGGTAAAGCGAGTTTAATGGGTATCAGTAAATTTGTTGCCAATAAGCGACTT
CGCTCAGTATTAATACAAGGCGCTCGCTCATACGTTCATCGCATGAAATCCGTCACCACTAAAAAAGATGAGTGGTTAGTCAAATTAATTGAACGTGCGG
GTTATGGTAAAGCAGCCGTTGCATTAGCTAATAAAAATGTTCGAACTGCGTGGGCATTACTAACTCAGGGAACAGAATATAGGAAAGAACTAATCGCTTA
AATTACTGTTACCTATTGCATTTAAAAAGTTTTAAAAGAGTTTCACCGAGTAAGCCAAGATTAGATAAAGATATCCATCTTGATAAAACCTGTTCCGCAG
TGAGGGATTTAAACCCGTTGCCACATATAGGAATCGAGATGCGCATACATTGAGGGTTAGGAGATAGCTTCTCCATCTAAAAACCGAATATACGTACGCG
CCTTAATCTAAGAATGGGATGCTTGATGAAAAGGAGGAGTCCATATA
ATTTAGCCAAAAATGTTATTCAAGTTTCTGTTCTTTCGCCTTTAAATAAAGAACTAACAAACAAAGAGCTTCCTCGAACAAAGTTCGCCGAGTTCCTGGC
TAAACAGCCTATAAGTCTTGTGGCGTTCGAAGCATGCTCAACAGCACATCATTGGGCGAGATTAGCGAGAAGTTATGGGCATCGGGTAAAAATCCTGCCC
GCAAAGGTAGTATCATCGTTTCGCCAAGGTCACAAAACTGATAAAAACGATGCACTTGCTGTCGCTGAAGCCGCTAACAGACCTAATGTAAAAGAAGCAC
CATTGAAAGAACTTGAGCAGCAAGGTATGCAGTCAATCCAGCGTTCAAGAGAGCTACTGGTTCAAAATAAAACGTGTTTATCAAATCATATTCGTGGTTT
ATTAATGGAATTTGGCGTATTTATTCCTAAAGGTTTCGCTTCTCTTTTTAAAAATATACCTGACATTTTGGAAGACGGTGAAAATGATATACCAGATATG
TTCAGAGCTACACTTAATCTAATGTATCAACGTTTACTTGACCTTCGTGATGATGTTGGATTGTTGGATGAACAAGTTAAACAATTAGTAAAAAACAATG
AAGCATGCTCGAATCTCACTAAAATGGAAGGCGTTGGGCCAATTAGCGCCATCCTACTATTTTCGACATTAGGTACTGGCGACGCGTTTAAAAATGGTCG
TGAGTTCTCAGCCTATATTGGTTTAACACCAAAGCAACACAGTAGTGGTGGTAAAGCGAGTTTAATGGGTATCAGTAAATTTGTTGCCAATAAGCGACTT
CGCTCAGTATTAATACAAGGCGCTCGCTCATACGTTCATCGCATGAAATCCGTCACCACTAAAAAAGATGAGTGGTTAGTCAAATTAATTGAACGTGCGG
GTTATGGTAAAGCAGCCGTTGCATTAGCTAATAAAAATGTTCGAACTGCGTGGGCATTACTAACTCAGGGAACAGAATATAGGAAAGAACTAATCGCTTA
AATTACTGTTACCTATTGCATTTAAAAAGTTTTAAAAGAGTTTCACCGAGTAAGCCAAGATTAGATAAAGATATCCATCTTGATAAAACCTGTTCCGCAG
TGAGGGATTTAAACCCGTTGCCACATATAGGAATCGAGATGCGCATACATTGAGGGTTAGGAGATAGCTTCTCCATCTAAAAACCGAATATACGTACGCG
CCTTAATCTAAGAATGGGATGCTTGATGAAAAGGAGGAGTCCATATA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1029 bp | 342 aa | 73 | 1101 | + | No |
Chemistry : DEDD
ORF sequence :
MNKVNTIGVDLAKNVIQVSVLSPLNKELTNKELPRTKFAEFLAKQPISLVAFEACSTAHHWARLARSYGHRVKILPAKVVSSFRQGHKTDKNDALAVAEA
ANRPNVKEAPLKELEQQGMQSIQRSRELLVQNKTCLSNHIRGLLMEFGVFIPKGFASLFKNIPDILEDGENDIPDMFRATLNLMYQRLLDLRDDVGLLDE
QVKQLVKNNEACSNLTKMEGVGPISAILLFSTLGTGDAFKNGREFSAYIGLTPKQHSSGGKASLMGISKFVANKRLRSVLIQGARSYVHRMKSVTTKKDE
WLVKLIERAGYGKAAVALANKNVRTAWALLTQGTEYRKELIA
ANRPNVKEAPLKELEQQGMQSIQRSRELLVQNKTCLSNHIRGLLMEFGVFIPKGFASLFKNIPDILEDGENDIPDMFRATLNLMYQRLLDLRDDVGLLDE
QVKQLVKNNEACSNLTKMEGVGPISAILLFSTLGTGDAFKNGREFSAYIGLTPKQHSSGGKASLMGISKFVANKRLRSVLIQGARSYVHRMKSVTTKKDE
WLVKLIERAGYGKAAVALANKNVRTAWALLTQGTEYRKELIA
Blast result :
Comments
No uninterrupted target sequence was found, so the ends of the IS have been defined by analogy with other IS1111 family elements, assuming that 6 nt separate IRl from the left-hand end of the element and 3 nt separate IRr from the right-hand end so that the first nt of the above sequence matches the one adjacent to the left-hand end of the above sequence.
The transposase protein is 37% identical to that of IS1111.
The transposase protein is 37% identical to that of IS1111.
References
1] The Institute for Genomic Research http://www.tigr.org
2] Partridge and Hall (2003) J. Bacteriol. 185, 6371-6384
2] Partridge and Hall (2003) J. Bacteriol. 185, 6371-6384