ISBfun2
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Burkholderia fungorum | Burkholderia fungorum LB400 |
DNA section
IS Length : 1085 bp
Ends
IR Length : 13?
IRL : AATTGAAATGAACGCGTCCCTCCCGTGAACGTAAGAATAAAGGGAAGGCG
IRR :
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
AATTGAAATGAACGCGTCCCTCCCGTGAACGTAAGAATAAAGGGAAGGCGGATCCTCTCGGGCCAACGGCATCGATGAGCCCATGTGGAAAAATATGGAA
CTTTCCCTGGCAACCGGAGGATCCAGATGAATCGTACGGCGGTGGGTGTGGATATCGCGAAGTCGGTGTTTCAAGTGCATTACGTTGATCCGGAAACCGG
GGAGATCGTGAACAAGCCGATCAAGCGCGCGAAGTTCTTGGAGTTCTTTGCGAACCGGGCACGTTGCCTCATTGGTATGGAAGCGTGCGGCGGCGCCCAA
CACTGGGCCCGACAACTGATGAAAATGGGACACGAGATCAGGCTGATGCCGGCGGAATTCGTCAAGGCCTTCAACATCAGGAACAAGAACGACGCGGCGG
ACGCGCGGGCAATCTGGCTTGCTGTGCAGCAGCCCGGCAAGCCGGTCGCTGTCAAGACAGAGATGCAACAGGCAATGCTGGCACTGCACCGCATGCGCCG
ACAGCTCGTGACATTTCGTACGATGCAGATCAACGGTCTTCGAGGCTTGCCGACGGAATACGGTGAAGTCATGGGACGAGGCCGTGCAGCCTTGGACAAG
GCAATACCGGAAGTACTCAGGCGCGTCGCAGAACGTTTGCCCGCAGTGGTAATTGACACGCTGCGCGAGCAATGGAATGGACTAACGAAACTCGATGAGC
AGGTCGCCTGCATCGAGCGCCGGATGCGCGAGTGGAAAAAGCAGGATAAGGCCGTGCAAGCGATCAGTGAGATTCCCGGTGTCGGACTGCTGACAGCCAC
GGCGGCAGTTGCGATGATGGGCGATGCGAAGGCATTCAGTTCGGGGCGGGAATTTGCCGCATGGGCCGGTCTTGTGCCGAAGCAAACCGGTTCAGGTGGC
AAAGTGAACCTGCACGGTATATCGAGGCGCGGGGACACGTACCTGCGCACGCTACTGATTCACGGGGCGAGAAGCGTGCTGACGCACGCGAAGGATCCAG
GGCCGTGGGTTGAGCAGATGAAGAAACGGCGCCCGCTAAACGTGGTCGTAGTTGCCTTGGCAAACAAGATCGCGCGCACAATCTGGGCAGGGACATTTCT
GCGGTACTCATATAATTTCCCTTGA
CTTTCCCTGGCAACCGGAGGATCCAGATGAATCGTACGGCGGTGGGTGTGGATATCGCGAAGTCGGTGTTTCAAGTGCATTACGTTGATCCGGAAACCGG
GGAGATCGTGAACAAGCCGATCAAGCGCGCGAAGTTCTTGGAGTTCTTTGCGAACCGGGCACGTTGCCTCATTGGTATGGAAGCGTGCGGCGGCGCCCAA
CACTGGGCCCGACAACTGATGAAAATGGGACACGAGATCAGGCTGATGCCGGCGGAATTCGTCAAGGCCTTCAACATCAGGAACAAGAACGACGCGGCGG
ACGCGCGGGCAATCTGGCTTGCTGTGCAGCAGCCCGGCAAGCCGGTCGCTGTCAAGACAGAGATGCAACAGGCAATGCTGGCACTGCACCGCATGCGCCG
ACAGCTCGTGACATTTCGTACGATGCAGATCAACGGTCTTCGAGGCTTGCCGACGGAATACGGTGAAGTCATGGGACGAGGCCGTGCAGCCTTGGACAAG
GCAATACCGGAAGTACTCAGGCGCGTCGCAGAACGTTTGCCCGCAGTGGTAATTGACACGCTGCGCGAGCAATGGAATGGACTAACGAAACTCGATGAGC
AGGTCGCCTGCATCGAGCGCCGGATGCGCGAGTGGAAAAAGCAGGATAAGGCCGTGCAAGCGATCAGTGAGATTCCCGGTGTCGGACTGCTGACAGCCAC
GGCGGCAGTTGCGATGATGGGCGATGCGAAGGCATTCAGTTCGGGGCGGGAATTTGCCGCATGGGCCGGTCTTGTGCCGAAGCAAACCGGTTCAGGTGGC
AAAGTGAACCTGCACGGTATATCGAGGCGCGGGGACACGTACCTGCGCACGCTACTGATTCACGGGGCGAGAAGCGTGCTGACGCACGCGAAGGATCCAG
GGCCGTGGGTTGAGCAGATGAAGAAACGGCGCCCGCTAAACGTGGTCGTAGTTGCCTTGGCAAACAAGATCGCGCGCACAATCTGGGCAGGGACATTTCT
GCGGTACTCATATAATTTCCCTTGA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
999 bp | 332 aa | 127 | 1125 | + | No |
Chemistry : DEDD
ORF sequence :
MNRTAVGVDIAKSVFQVHYVDPETGEIVNKPIKRAKFLEFFANRARCLIGMEACGGAQHWARQLMKMGHEIRLMPAEFVKAFNIRNKNDAADARAIWLAV
QQPGKPVAVKTEMQQAMLALHRMRRQLVTFRTMQINGLRGLPTEYGEVMGRGRAALDKAIPEVLRRVAERLPAVVIDTLREQWNGLTKLDEQVACIERRM
REWKKQDKAVQAISEIPGVGLLTATAAVAMMGDAKAFSSGREFAAWAGLVPKQTGSGGKVNLHGISRRGDTYLRTLLIHGARSVLTHAKDPGPWVEQMKK
RRPLNVVVVALANKIARTIWAGTFLRYSYNFP
QQPGKPVAVKTEMQQAMLALHRMRRQLVTFRTMQINGLRGLPTEYGEVMGRGRAALDKAIPEVLRRVAERLPAVVIDTLREQWNGLTKLDEQVACIERRM
REWKKQDKAVQAISEIPGVGLLTATAAVAMMGDAKAFSSGREFAAWAGLVPKQTGSGGKVNLHGISRRGDTYLRTLLIHGARSVLTHAKDPGPWVEQMKK
RRPLNVVVVALANKIARTIWAGTFLRYSYNFP
Blast result :
Comments
Unable to identify the right-hand end of this IS, including IRr, so the left-hand end has been defined by analogy with other IS1111 family elements, assuming 7 nt separate IRl from the left-hand end of the element.
The transposase protein is 85% identical to that of ISBcen5 and 39% identical to that of IS1111.
The transposase protein is 85% identical to that of ISBcen5 and 39% identical to that of IS1111.
References
1] US Department of Energy Joint Genome Institute http://jgi.doe.gov/JGI_microbial/html/
2] Partridge and Hall (2003) J. Bacteriol. 185, 6371-6384
2] Partridge and Hall (2003) J. Bacteriol. 185, 6371-6384