ISBfun2

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Burkholderia fungorum
Burkholderia fungorum LB400
DNA section
IS Length : 1085 bp

Ends


IR Length : 13?

IRL : AATTGAAATGAACGCGTCCCTCCCGTGAACGTAAGAATAAAGGGAAGGCG
IRR :

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

AATTGAAATGAACGCGTCCCTCCCGTGAACGTAAGAATAAAGGGAAGGCGGATCCTCTCGGGCCAACGGCATCGATGAGCCCATGTGGAAAAATATGGAA
CTTTCCCTGGCAACCGGAGGATCCAGATGAATCGTACGGCGGTGGGTGTGGATATCGCGAAGTCGGTGTTTCAAGTGCATTACGTTGATCCGGAAACCGG
GGAGATCGTGAACAAGCCGATCAAGCGCGCGAAGTTCTTGGAGTTCTTTGCGAACCGGGCACGTTGCCTCATTGGTATGGAAGCGTGCGGCGGCGCCCAA
CACTGGGCCCGACAACTGATGAAAATGGGACACGAGATCAGGCTGATGCCGGCGGAATTCGTCAAGGCCTTCAACATCAGGAACAAGAACGACGCGGCGG
ACGCGCGGGCAATCTGGCTTGCTGTGCAGCAGCCCGGCAAGCCGGTCGCTGTCAAGACAGAGATGCAACAGGCAATGCTGGCACTGCACCGCATGCGCCG
ACAGCTCGTGACATTTCGTACGATGCAGATCAACGGTCTTCGAGGCTTGCCGACGGAATACGGTGAAGTCATGGGACGAGGCCGTGCAGCCTTGGACAAG
GCAATACCGGAAGTACTCAGGCGCGTCGCAGAACGTTTGCCCGCAGTGGTAATTGACACGCTGCGCGAGCAATGGAATGGACTAACGAAACTCGATGAGC
AGGTCGCCTGCATCGAGCGCCGGATGCGCGAGTGGAAAAAGCAGGATAAGGCCGTGCAAGCGATCAGTGAGATTCCCGGTGTCGGACTGCTGACAGCCAC
GGCGGCAGTTGCGATGATGGGCGATGCGAAGGCATTCAGTTCGGGGCGGGAATTTGCCGCATGGGCCGGTCTTGTGCCGAAGCAAACCGGTTCAGGTGGC
AAAGTGAACCTGCACGGTATATCGAGGCGCGGGGACACGTACCTGCGCACGCTACTGATTCACGGGGCGAGAAGCGTGCTGACGCACGCGAAGGATCCAG
GGCCGTGGGTTGAGCAGATGAAGAAACGGCGCCCGCTAAACGTGGTCGTAGTTGCCTTGGCAAACAAGATCGCGCGCACAATCTGGGCAGGGACATTTCT
GCGGTACTCATATAATTTCCCTTGA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
999 bp332 aa1271125+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MNRTAVGVDIAKSVFQVHYVDPETGEIVNKPIKRAKFLEFFANRARCLIGMEACGGAQHWARQLMKMGHEIRLMPAEFVKAFNIRNKNDAADARAIWLAV
QQPGKPVAVKTEMQQAMLALHRMRRQLVTFRTMQINGLRGLPTEYGEVMGRGRAALDKAIPEVLRRVAERLPAVVIDTLREQWNGLTKLDEQVACIERRM
REWKKQDKAVQAISEIPGVGLLTATAAVAMMGDAKAFSSGREFAAWAGLVPKQTGSGGKVNLHGISRRGDTYLRTLLIHGARSVLTHAKDPGPWVEQMKK
RRPLNVVVVALANKIARTIWAGTFLRYSYNFP

 

Blast result :
Comments
Unable to identify the right-hand end of this IS, including IRr, so the left-hand end has been defined by analogy with other IS1111 family elements, assuming 7 nt separate IRl from the left-hand end of the element.

The transposase protein is 85% identical to that of ISBcen5 and 39% identical to that of IS1111.
References
1] US Department of Energy Joint Genome Institute http://jgi.doe.gov/JGI_microbial/html/
2] Partridge and Hall (2003) J. Bacteriol. 185, 6371-6384