ISVpa1
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AP005088 | ND | Vibrio parahaemolyticus | Vibrio parahaemolyticus O3:K6 |
DNA section
IS Length : 1318 bp
Ends
IR Length : 12
IRL : taataagATGGTACGCCCCACACCTGCACTACACTCAGCTATGTCGCTGA
IRR : ----tgtATGGTACGCCCCGTTTTGCAAGTGAAAAATCCAAATAACGGCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
TAATAAGATGGTACGCCCCACACCTGCACTACACTCAGCTATGTCGCTGAATATTGGGAGGTGCCATCATGTCGGCAATCAAAGTTATTGGAATCGATTT
AGGTAAGTCTACTTTTCATCTAGTTGGCCACGATTATAGTGGTCGTGAACAATATCGGCACAAATTATCTAGAAGTAAATTACTACAGTTTATCTCTGTG
CATGAACCAACATTGATAGCAATGGAGGCTTGCTGTGGTGCTCACTGGCTTGCAAGAAAATGCCAAGAATACGGGCATCAAGTTAAACTTATCCCACCTC
AATATGTAAAACCTTACGTTAAAGCTCATAAGAATGACTTTATCGATGCAGCTGCTATTGCTGAGGCATCTACAAGACCTAATATGAGGTTCGTTTCTCC
AAAGAGTGAGCAGGCTCAAGTAGGCGTCGTTATTCGGCGTGTTAGAACTGGTTATATTAGGGAGAGGACAGCAACGATGAACCGTATTGGTTCGATGTTA
ATAGAGTTTGGCATCAGCTTTCCACGGGGTCATGCAAACATGAAAAAGCTGTTTCAATGGTTAGCGGACAACAAAGAACCGATCCCTCCGTTATTGGTTC
GGGAACTACAAAATCAGCTCGACTATTACAATCAACTGAATGAACGGATAAAAGAGCAAGACCGAAAAATAGAAAAACTGAGTTCCGAAGACGAACTTTA
CACTTTACTTCAAACGATACCAGGTGTGGGTCCCATGACTGCATCTTGCTGTTTATCGTGTGTTGGAAAACCTTCAGATTTTTCTAATGGTAGAAACTTT
GCAGCGTGGATCGGACTTGTACCATTCCAGTACTCGACTGGAGGGAAACAACGGATGCTGGGAATTTCAAAGCGAGGAAATAAAAAGCTGAGAGAACTCT
TTGTTCATGCCGCACGAGCAGTGATGTGGAGGGAAGAAACTGCTGAACGCTATTTCGGTTCATGGTTATTAGATTTGAAACGTCGAAAGCCTTTTAATGT
TGCTCTAGTTGCGTTAGCAAATAAGCTAGCGAGGATTGCATGGTCAGTAATGACAAGTCACAAGCCCTTTGAATTAAGAGTTTAATCTAGATTTGCATAT
GGTAATGAAAGATGACAAAACGGTTAGACCACCAGATTGAAGACCTGATGGACAGAACAGCAACTAGAGTGCTTTCACGTTTTTGAGGACAATCTGGCGC
GGATCTCATCGTAGAGCTGGGGCTAACTAATCAGTGTCCCAATTAGACTCTGAATACATTAGCGCAAACCAACGCCGTTATTTGGATTTTTCACTTGCAA
AACGGGGCGTACCATACA
AGGTAAGTCTACTTTTCATCTAGTTGGCCACGATTATAGTGGTCGTGAACAATATCGGCACAAATTATCTAGAAGTAAATTACTACAGTTTATCTCTGTG
CATGAACCAACATTGATAGCAATGGAGGCTTGCTGTGGTGCTCACTGGCTTGCAAGAAAATGCCAAGAATACGGGCATCAAGTTAAACTTATCCCACCTC
AATATGTAAAACCTTACGTTAAAGCTCATAAGAATGACTTTATCGATGCAGCTGCTATTGCTGAGGCATCTACAAGACCTAATATGAGGTTCGTTTCTCC
AAAGAGTGAGCAGGCTCAAGTAGGCGTCGTTATTCGGCGTGTTAGAACTGGTTATATTAGGGAGAGGACAGCAACGATGAACCGTATTGGTTCGATGTTA
ATAGAGTTTGGCATCAGCTTTCCACGGGGTCATGCAAACATGAAAAAGCTGTTTCAATGGTTAGCGGACAACAAAGAACCGATCCCTCCGTTATTGGTTC
GGGAACTACAAAATCAGCTCGACTATTACAATCAACTGAATGAACGGATAAAAGAGCAAGACCGAAAAATAGAAAAACTGAGTTCCGAAGACGAACTTTA
CACTTTACTTCAAACGATACCAGGTGTGGGTCCCATGACTGCATCTTGCTGTTTATCGTGTGTTGGAAAACCTTCAGATTTTTCTAATGGTAGAAACTTT
GCAGCGTGGATCGGACTTGTACCATTCCAGTACTCGACTGGAGGGAAACAACGGATGCTGGGAATTTCAAAGCGAGGAAATAAAAAGCTGAGAGAACTCT
TTGTTCATGCCGCACGAGCAGTGATGTGGAGGGAAGAAACTGCTGAACGCTATTTCGGTTCATGGTTATTAGATTTGAAACGTCGAAAGCCTTTTAATGT
TGCTCTAGTTGCGTTAGCAAATAAGCTAGCGAGGATTGCATGGTCAGTAATGACAAGTCACAAGCCCTTTGAATTAAGAGTTTAATCTAGATTTGCATAT
GGTAATGAAAGATGACAAAACGGTTAGACCACCAGATTGAAGACCTGATGGACAGAACAGCAACTAGAGTGCTTTCACGTTTTTGAGGACAATCTGGCGC
GGATCTCATCGTAGAGCTGGGGCTAACTAATCAGTGTCCCAATTAGACTCTGAATACATTAGCGCAAACCAACGCCGTTATTTGGATTTTTCACTTGCAA
AACGGGGCGTACCATACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1017 bp | 338 aa | 69 | 1085 | + | No |
Chemistry : DEDD
ORF sequence :
MSAIKVIGIDLGKSTFHLVGHDYSGREQYRHKLSRSKLLQFISVHEPTLIAMEACCGAHWLARKCQEYGHQVKLIPPQYVKPYVKAHKNDFIDAAAIAEA
STRPNMRFVSPKSEQAQVGVVIRRVRTGYIRERTATMNRIGSMLIEFGISFPRGHANMKKLFQWLADNKEPIPPLLVRELQNQLDYYNQLNERIKEQDRK
IEKLSSEDELYTLLQTIPGVGPMTASCCLSCVGKPSDFSNGRNFAAWIGLVPFQYSTGGKQRMLGISKRGNKKLRELFVHAARAVMWREETAERYFGSWL
LDLKRRKPFNVALVALANKLARIAWSVMTSHKPFELRV
STRPNMRFVSPKSEQAQVGVVIRRVRTGYIRERTATMNRIGSMLIEFGISFPRGHANMKKLFQWLADNKEPIPPLLVRELQNQLDYYNQLNERIKEQDRK
IEKLSSEDELYTLLQTIPGVGPMTASCCLSCVGKPSDFSNGRNFAAWIGLVPFQYSTGGKQRMLGISKRGNKKLRELFVHAARAVMWREETAERYFGSWL
LDLKRRKPFNVALVALANKLARIAWSVMTSHKPFELRV
Blast result :
Comments
No uninterrupted target sequence was found, so the ends of the IS have been defined by analogy with other IS1111 family elements, assuming that 7 nt separate IRl from the left-hand end of the element and 4 nt separate IRr from the right-hand end. The first residue of the sequence may in fact belong as the final residue, giving 6 nt on the left and 4 on the right.
The transposase gene corresponds to orf VPA1254 and the transposase protein is 36% identical to that of IS1111.
The transposase gene corresponds to orf VPA1254 and the transposase protein is 36% identical to that of IS1111.
References
1] Makino et al. (2003) Lancet 361, 743-749
2] Partridge and Hall (2003) J. Bacteriol. 185, 6371-6384
2] Partridge and Hall (2003) J. Bacteriol. 185, 6371-6384