ISMbov1

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform ISMag1Synonym(s)
Accession numberTranspositionOriginHost
AJ564386 ND Mycoplasma bovis
Mycoplasma bovis isolate 2610
DNA section
IS Length : 1521 bp

Ends


IR Length : 19/26

IRL : TATTCATTAACAAAGCAAAAAGCACCACAAGTTAACTTGCGGCGCTTTTT
IRR : TATAAATTCTTAAATTAAAAAGCACCTAATTTGAGTATTGGAAAAATAAT

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

TATTCATTAACAAAGCAAAAAGCACCACAAGTTAACTTGCGGCGCTTTTTGTTGCCTTTTGTTAAAATTTGAGTATTGAATTAAAAAAAAGAAAGGCTTT
TACATTATATATGATTAGCAATGACAAAAATACTAGTTATTCAACTGACCTATGCTTGCTTAAAAAGAAATTAAATGTGCACGGCAAGTACAAGTTTAAT
TATGTACATTATGTAATTGATGAAACGAATTGAGATGAAATATTGACCAAGTCAAATCACAAAACCAATAAAAATAACATTAGCCCGTTGAGACTTAAAG
AAATTCTTGAAAGGCTAATTGCAGGCTATGATATGAAAACTGTTTCTAATATTGTGGGATTTAAATCAAGATCAATTTATAACTTATTTGACAGAATTAC
AATTGAAACAAAGCGTGGCTATGCTAAATACCAAAAGAAATGTAAATTGTGTGGTATGGACTTAAAAGGCAAAACAATATATGTAATTAGTGCTCTCAAA
TTTTTGAATTTAATTGAAACAAGACATGATTCAAAAAGATTAGAAAACAATTCTAAATTGCTTATGAAATACATTGACATTTTTAAGTTTTACAAACAGT
TACTGTACTTTTATTTGAAGAATAGAAATAGTTTTAACTTAGATAGTAAAGCTGTTAAACAGTCTGTGGCAAGCATTATTTTTAAATACATAAGAGAACT
AGAAGCACAGGGAAAACTTCAAAATTCATATGTTCCATCAGTTCAAAACTTTTACCGTATATTGGCTAAACATAGTGCTTTTGGTCTAAAATTAGATATT
CTTCCATATAAATCAAACGGCAAATATGGAAGTAGAACAACAGTAAAGCATGAGACAAAGAAAAAGACAATAGGCAAACTTATTACTGAACGTCCAGAAT
CAGTTAATTTAAGACTAAATGACAATGATTATGAAATGGACACTGTAATTGGTTTAAGATCTGACAATTATTGCATTCTTACATTAATCAACAGAAAATC
TAGAATGTTTTATTGCACGCTCTCTAGAAGAAATGCAAAAGCAATAAAAGAAAATTTGGAGAAATTAATTAAGGACAATAATCTTGTTATTGACACATTA
ACTATTGATAATGGAAGCAAAAATTACAAACTTCCAGAGATAGAATCAATCAAAGAAATTTTCCATTGTCATCCTTATTCATCATCAGAAAAAGGTAGCA
TTGAAAATGCTCACAGACTTTTAAGAAGATACATTCCAAAGGGAAAATCTATAGATAAATATGTTGGTCAAGATCTAAAACCAATAGCCGATTTTATAAA
TTCACATCCAAGAATTTATAAAGGTGTCTCAGGCTTTAAATGCGCTAAGCAAATGCAATAAAAATTAACATCAACACAAAATTTTGCACTTTTGAGTACT
CAAAAGTATCTTTTCTTTATTCTTTTTTTATGCTTTAGGCCATTTTCTTGTCAGAACCACCAAAAATTGGTATTATTTTTCCAATACTCAAATTAGGTGC
TTTTTAATTTAAGAATTTATA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1029 bp342 aa3331361+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKTVSNIVGFKSRSIYNLFDRITIETKRGYAKYQKKCKLCGMDLKGKTIYVISALKFLNLIETRHDSKRLENNSKLLMKYIDIFKFYKQLLYFYLKNRNS
FNLDSKAVKQSVASIIFKYIRELEAQGKLQNSYVPSVQNFYRILAKHSAFGLKLDILPYKSNGKYGSRTTVKHETKKKTIGKLITERPESVNLRLNDNDY
EMDTVIGLRSDNYCILTLINRKSRMFYCTLSRRNAKAIKENLEKLIKDNNLVIDTLTIDNGSKNYKLPEIESIKEIFHCHPYSSSEKGSIENAHRLLRRY
IPKGKSIDKYVGQDLKPIADFINSHPRIYKGVSGFKCAKQMQ

 

Blast result :
Comments
ISMbov1 is 94% aa identical and 98% aa similar to ISMag1
References
1] Vilei E.M (2004) Direct submission GenBank