ISMag1

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AJ311887 ND Mycoplasma agalactiae
Mycoplasma agalactiae
DNA section
IS Length : 1515 bp

Ends


IR Length : 20/26

IRL : TATTCATTAACGAAGTAAAAAGCACCACAAGTTAACTTGCGGTGCTTTCT
IRR : TATAAATTCTTAAAGTAAAAAGCACCTTTTTTGAGTATCGGAAAAATAAT

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

TATTCATTAACGAAGTAAAAAGCACCACAAGTTAACTTGCGGTGCTTTCTGTTGCCTTTTTTTAAAATTTGAGTAACTAACTTAAAAAGAAAGGCTTTTA
AATTATATATGATTAGCAATGACAAAAATACTAGTTATTCAACTGACATATGCTTGTTTAAAAAAATAAATGTGTACGGCAAGTACAAGTTTAATTATGT
ACATTATGTGATTGATGAAACACATTGAGATGAAATACTAACTAGGTCAAATCTCAAAACCAATAAAAATAACATTAGCCCATTAAGACTTAAAGAAATT
CTTGAAAGACTAATTGCAGGCTATGATATGAAAACTGTTTCTAACATTGTAGGGTTTAAATCAAGATCAATTTATAACTTATTTGACAGAATTAAAATTG
AGACAAAGCGTGGTTATGCTAAATACCAAAAGAAATGTAAATTGTGTGGTATGGATTTAAAAGGCAAAACGATATATGTAATTAGTGCTCTCAAATTTTT
AAACTTAATTGAAACAAGGAACGATTCAAAAAGATTAGAAAACAATCCTAAATTGCTGATGAAACATATTGACTTTTTTAAGTTTTACCAGCAGTTACTA
TACTTTTATTTAAAGAATAGAAATAGTTTTAACTTGGAAAATAAAGCTGTTAAACAGTCTGTTTCTAGCATTATTTTTAAATACATAAGAGAACTAGAAG
CACAAGGAAAACTTCATAATTCATATATTCCATCAGTTCAAAACTTTTACCGTATATTGGCTAAACATAGTGCTTTTGGTCTAAAATTAGATATTCTTCC
ATATAAATCAAATGGCAAATATGGAAGCCGCACAACTGTAAAGCACGAAACCAAGAAAAAGACAATAGGCAAACTTATTACTGAACGTCCAGAATCAGTT
AATTTAAGACTAAATGACAACGATTACGAAATGGACACTGTAATTGGTTTAAGATCTGACAATTATTGCATTCTTACATTAATCAACAGAAAATCTAGAA
TGTTTTATTGCACTCTATCTAGAAGAAATGCAAAAGCAATAAAAGAAAATTTAGAGAAATTGATTAAGGACAATAATCTTATTCTTGACACATTAACTAT
TGATAACGGAAGTGAAAATTATAAACTTCCAGAGATAGAATATATCAGAGAAATTTTTCATTGCCACCCTTATTCATCATCAGAAAAAGGTAGTATCGAA
AATGCTCATAGACTATTAAGAAGATACGTTCCAAAGGGAAAATCTATAGATAGATATGTTGGTCAAGATCTAAAACCAATAGCAGATTTTATAAATTCAC
ACCCAAGAATTTATAAAGGAATTTCTGGCTTTAAATGTGCTAAGCAAATGCAATAAAAATTAACATAACACAAAATTCCGCACTTTTGAGTACTCAAAAG
TATCTTTTCTTTATTCTTTTTTTACTCTTTTAGTCATTCACTTGTTAGAACTTCCAAAAATTGGTATTATTTTTCCGATACTCAAAAAAGGTGCTTTTTA
CTTTAAGAATTTATA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1029 bp342 aa3281356+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKTVSNIVGFKSRSIYNLFDRIKIETKRGYAKYQKKCKLCGMDLKGKTIYVISALKFLNLIETRNDSKRLENNPKLLMKHIDFFKFYQQLLYFYLKNRNS
FNLENKAVKQSVSSIIFKYIRELEAQGKLHNSYIPSVQNFYRILAKHSAFGLKLDILPYKSNGKYGSRTTVKHETKKKTIGKLITERPESVNLRLNDNDY
EMDTVIGLRSDNYCILTLINRKSRMFYCTLSRRNAKAIKENLEKLIKDNNLILDTLTIDNGSENYKLPEIEYIREIFHCHPYSSSEKGSIENAHRLLRRY
VPKGKSIDRYVGQDLKPIADFINSHPRIYKGISGFKCAKQMQ

 

Blast result :
Comments
ISMag1 is 62% aa simialr to IS1239.
References
1] Vilei,E.M. (2001) Direct submission GenBank