ISGsu1

  • Family IS4
  • Group IS4Sa
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AE017180 ND Geobacter sulfurreducens
Geobacter sulfurreducens PCA
DNA section
IS Length : 1240 bp

Ends


IR Length : 19

IRL : CACTGCTGTCCCATAGTTTAACTGAATAAAGAGAGGCCCTGAGAGCTACT
IRR : CACTGCTGTCCCATAGTTTCTAAAGCAGCACCAGTTGTGGCGAAGCCTCT

Insertion site


Left flankDirect repeatRight flankDR Length
ATGGAGCTTTGCGCGGCATATCAAGTTTC9
GTCGAGGAAGGTGTTGACCAGAAGGGGGA9
GAGATTATTCATGGAATATATCGAGCTAT9
AGGAAGGAACAGGTACCACACAAACTAAT9
GTGAGAACAGGGTGAAGATGATGGTGTTG9

DNA sequence

CACTGCTGTCCCATAGTTTAACTGAATAAAGAGAGGCCCTGAGAGCTACTTGTGATATATTGAGTTCGCCAAAACACCAATATTAACAAGGAGATCAGAG
CCGTGGCACATTGTAACACAGTCCTTAACCAAGTTGTCGGTTTTTTCAAGAGACATGAATTTGAATCCCTTGCCCGCAAGCATCACATCGGGCAGAAGTT
TCGTTCTTTTAACCGTTGGTCGCAGTTCATGGCGATGATGGTTTGTCAACTTTCCGGCAGAAAAAGTCTGCGGGATATCGTGGAAAACCTCAAGGCCCAA
GGCCACAAGCTCTATCATCTGGGCATGAAGACGGTTTCCCGTACCACCTTGGCCAGAGTGAACGATGAACAGCCGCATGAGTTGTACAAAGAGCTCTTTT
ACAAAATGCTGCATCGATGCAAGGCAGTTGCACCCAGTCATCGCTTCAAGATCGATGAAAAAGTCTATCTGCTGGATGCCACCACCATCAATCTCTGTCT
GGAGGCGTTCCCTTGGGCCACCTACCGGCAGAAGAAGGGTGCCATAAAGATGCATGTCGGTCTTGATGCTGACGGCTATCTGCCTGAGTTCATCGATGTG
ACCGAAGGCAAGAAGCACGAGATGTCCTGGGCCAGGATGCTACAACTGCCTGCCGGTTCACTGGCCGTCTTTGACCGGGGCTTCACCGATTACGACTGGT
GGCAGCAACTAACGACCAACGGCATCTTCTTCGTAACCCGGCTGAAAGAGAACGCCTTGGTGGAATACTTCAAGAAGCGTCCCGGCAGGAAAGCAACGGG
CGTCATTCTTGACCAGGAGATTCGGCTCAAAGGGATGAAGGACAAACTGCGGCTTGTCCAGTTCATCGCCGATGACGGCAACGATTACCGCTTCGTGACC
AATGCGCATCACCTGAAAGCAGCAATCGTGGCGGATCTCTACAAAGAGCGCTGGAAGATCGAACTGTTCTTCAAGTGGATCAAACAGAACCTGAAGATCA
AGACCTTCCTCGGCACCTCGGAGAATGCCGTACTCACACAGATCTGGATTGCCCTGTGCGTGTATCTGGTACTGGCATACTTGACGTTTCTGTCAAAGAT
CGGATCGTCGATGCAGCAGATATTACGGTTATTACAGCTGAATTTGTTCGAGCGGCGAGACCTTGAAAGCCTATTCAAACCACCGAAAGTAGAGGCTTCG
CCACAACTGGTGCTGCTTTAGAAACTATGGGACAGCAGTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1119 bp372 aa1031221+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAHCNTVLNQVVGFFKRHEFESLARKHHIGQKFRSFNRWSQFMAMMVCQLSGRKSLRDIVENLKAQGHKLYHLGMKTVSRTTLARVNDEQPHELYKELFY
KMLHRCKAVAPSHRFKIDEKVYLLDATTINLCLEAFPWATYRQKKGAIKMHVGLDADGYLPEFIDVTEGKKHEMSWARMLQLPAGSLAVFDRGFTDYDWW
QQLTTNGIFFVTRLKENALVEYFKKRPGRKATGVILDQEIRLKGMKDKLRLVQFIADDGNDYRFVTNAHHLKAAIVADLYKERWKIELFFKWIKQNLKIK
TFLGTSENAVLTQIWIALCVYLVLAYLTFLSKIGSSMQQILRLLQLNLFERRDLESLFKPPKVEASPQLVLL

 

Blast result :
Comments
There are 5 copies of ISGsu1 in this strain. One copy of ISGsu1 contains an ISGsu7 insertion.
References
1] Methe BA, Nelson KE, Eisen JA, Paulsen IT, Nelson W, Heidelberg JF, Wu D, Wu M, Ward N, Beanan MJ, Dodson RJ, Madupu R, Brinkac LM, Daugherty SC, DeBoy RT, Durkin AS, Gwinn M, Kolonay JF, Sullivan SA, Haft DH, Selengut J, Davidsen TM, Zafar N, White O, Tran B, Romero C, Forberger HA, Weidman J, Khouri H, Feldblyum TV, Utterback TR, Van Aken SE, Lovley DR, Fraser CM. (2003) Science 302 (5652), 1967-1969