ISGsu1
- Family IS4
- Group IS4Sa
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AE017180 | ND | Geobacter sulfurreducens | Geobacter sulfurreducens PCA |
DNA section
IS Length : 1240 bp
Ends
IR Length : 19
IRL : CACTGCTGTCCCATAGTTTAACTGAATAAAGAGAGGCCCTGAGAGCTACT
IRR : CACTGCTGTCCCATAGTTTCTAAAGCAGCACCAGTTGTGGCGAAGCCTCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATGGAGCTTT | GCGCGGCAT | ATCAAGTTTC | 9 |
GTCGAGGAAG | GTGTTGACC | AGAAGGGGGA | 9 |
GAGATTATTC | ATGGAATAT | ATCGAGCTAT | 9 |
AGGAAGGAAC | AGGTACCAC | ACAAACTAAT | 9 |
GTGAGAACAG | GGTGAAGAT | GATGGTGTTG | 9 |
DNA sequence
CACTGCTGTCCCATAGTTTAACTGAATAAAGAGAGGCCCTGAGAGCTACTTGTGATATATTGAGTTCGCCAAAACACCAATATTAACAAGGAGATCAGAG
CCGTGGCACATTGTAACACAGTCCTTAACCAAGTTGTCGGTTTTTTCAAGAGACATGAATTTGAATCCCTTGCCCGCAAGCATCACATCGGGCAGAAGTT
TCGTTCTTTTAACCGTTGGTCGCAGTTCATGGCGATGATGGTTTGTCAACTTTCCGGCAGAAAAAGTCTGCGGGATATCGTGGAAAACCTCAAGGCCCAA
GGCCACAAGCTCTATCATCTGGGCATGAAGACGGTTTCCCGTACCACCTTGGCCAGAGTGAACGATGAACAGCCGCATGAGTTGTACAAAGAGCTCTTTT
ACAAAATGCTGCATCGATGCAAGGCAGTTGCACCCAGTCATCGCTTCAAGATCGATGAAAAAGTCTATCTGCTGGATGCCACCACCATCAATCTCTGTCT
GGAGGCGTTCCCTTGGGCCACCTACCGGCAGAAGAAGGGTGCCATAAAGATGCATGTCGGTCTTGATGCTGACGGCTATCTGCCTGAGTTCATCGATGTG
ACCGAAGGCAAGAAGCACGAGATGTCCTGGGCCAGGATGCTACAACTGCCTGCCGGTTCACTGGCCGTCTTTGACCGGGGCTTCACCGATTACGACTGGT
GGCAGCAACTAACGACCAACGGCATCTTCTTCGTAACCCGGCTGAAAGAGAACGCCTTGGTGGAATACTTCAAGAAGCGTCCCGGCAGGAAAGCAACGGG
CGTCATTCTTGACCAGGAGATTCGGCTCAAAGGGATGAAGGACAAACTGCGGCTTGTCCAGTTCATCGCCGATGACGGCAACGATTACCGCTTCGTGACC
AATGCGCATCACCTGAAAGCAGCAATCGTGGCGGATCTCTACAAAGAGCGCTGGAAGATCGAACTGTTCTTCAAGTGGATCAAACAGAACCTGAAGATCA
AGACCTTCCTCGGCACCTCGGAGAATGCCGTACTCACACAGATCTGGATTGCCCTGTGCGTGTATCTGGTACTGGCATACTTGACGTTTCTGTCAAAGAT
CGGATCGTCGATGCAGCAGATATTACGGTTATTACAGCTGAATTTGTTCGAGCGGCGAGACCTTGAAAGCCTATTCAAACCACCGAAAGTAGAGGCTTCG
CCACAACTGGTGCTGCTTTAGAAACTATGGGACAGCAGTG
CCGTGGCACATTGTAACACAGTCCTTAACCAAGTTGTCGGTTTTTTCAAGAGACATGAATTTGAATCCCTTGCCCGCAAGCATCACATCGGGCAGAAGTT
TCGTTCTTTTAACCGTTGGTCGCAGTTCATGGCGATGATGGTTTGTCAACTTTCCGGCAGAAAAAGTCTGCGGGATATCGTGGAAAACCTCAAGGCCCAA
GGCCACAAGCTCTATCATCTGGGCATGAAGACGGTTTCCCGTACCACCTTGGCCAGAGTGAACGATGAACAGCCGCATGAGTTGTACAAAGAGCTCTTTT
ACAAAATGCTGCATCGATGCAAGGCAGTTGCACCCAGTCATCGCTTCAAGATCGATGAAAAAGTCTATCTGCTGGATGCCACCACCATCAATCTCTGTCT
GGAGGCGTTCCCTTGGGCCACCTACCGGCAGAAGAAGGGTGCCATAAAGATGCATGTCGGTCTTGATGCTGACGGCTATCTGCCTGAGTTCATCGATGTG
ACCGAAGGCAAGAAGCACGAGATGTCCTGGGCCAGGATGCTACAACTGCCTGCCGGTTCACTGGCCGTCTTTGACCGGGGCTTCACCGATTACGACTGGT
GGCAGCAACTAACGACCAACGGCATCTTCTTCGTAACCCGGCTGAAAGAGAACGCCTTGGTGGAATACTTCAAGAAGCGTCCCGGCAGGAAAGCAACGGG
CGTCATTCTTGACCAGGAGATTCGGCTCAAAGGGATGAAGGACAAACTGCGGCTTGTCCAGTTCATCGCCGATGACGGCAACGATTACCGCTTCGTGACC
AATGCGCATCACCTGAAAGCAGCAATCGTGGCGGATCTCTACAAAGAGCGCTGGAAGATCGAACTGTTCTTCAAGTGGATCAAACAGAACCTGAAGATCA
AGACCTTCCTCGGCACCTCGGAGAATGCCGTACTCACACAGATCTGGATTGCCCTGTGCGTGTATCTGGTACTGGCATACTTGACGTTTCTGTCAAAGAT
CGGATCGTCGATGCAGCAGATATTACGGTTATTACAGCTGAATTTGTTCGAGCGGCGAGACCTTGAAAGCCTATTCAAACCACCGAAAGTAGAGGCTTCG
CCACAACTGGTGCTGCTTTAGAAACTATGGGACAGCAGTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1119 bp | 372 aa | 103 | 1221 | + | No |
Chemistry : DDE
ORF sequence :
MAHCNTVLNQVVGFFKRHEFESLARKHHIGQKFRSFNRWSQFMAMMVCQLSGRKSLRDIVENLKAQGHKLYHLGMKTVSRTTLARVNDEQPHELYKELFY
KMLHRCKAVAPSHRFKIDEKVYLLDATTINLCLEAFPWATYRQKKGAIKMHVGLDADGYLPEFIDVTEGKKHEMSWARMLQLPAGSLAVFDRGFTDYDWW
QQLTTNGIFFVTRLKENALVEYFKKRPGRKATGVILDQEIRLKGMKDKLRLVQFIADDGNDYRFVTNAHHLKAAIVADLYKERWKIELFFKWIKQNLKIK
TFLGTSENAVLTQIWIALCVYLVLAYLTFLSKIGSSMQQILRLLQLNLFERRDLESLFKPPKVEASPQLVLL
KMLHRCKAVAPSHRFKIDEKVYLLDATTINLCLEAFPWATYRQKKGAIKMHVGLDADGYLPEFIDVTEGKKHEMSWARMLQLPAGSLAVFDRGFTDYDWW
QQLTTNGIFFVTRLKENALVEYFKKRPGRKATGVILDQEIRLKGMKDKLRLVQFIADDGNDYRFVTNAHHLKAAIVADLYKERWKIELFFKWIKQNLKIK
TFLGTSENAVLTQIWIALCVYLVLAYLTFLSKIGSSMQQILRLLQLNLFERRDLESLFKPPKVEASPQLVLL
Blast result :
Comments
There are 5 copies of ISGsu1 in this strain. One copy of ISGsu1 contains an ISGsu7 insertion.
References
1] Methe BA, Nelson KE, Eisen JA, Paulsen IT, Nelson W, Heidelberg JF, Wu D, Wu M, Ward N, Beanan MJ, Dodson RJ, Madupu R, Brinkac LM, Daugherty SC, DeBoy RT, Durkin AS, Gwinn M, Kolonay JF, Sullivan SA, Haft DH, Selengut J, Davidsen TM, Zafar N, White O, Tran B, Romero C, Forberger HA, Weidman J, Khouri H, Feldblyum TV, Utterback TR, Van Aken SE, Lovley DR, Fraser CM. (2003) Science 302 (5652), 1967-1969