ISGsu2

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AE017180 ND Geobacter sulfurreducens
Geobacter sulfurreducens PCA
DNA section
IS Length : 1319 bp

Ends


IR Length : 13

IRL : CAGGCTGTTGAAATTGAAATAGAGAAAACAGCCTATTTGTGGTACATTGT
IRR : CAGGCTGTTGAAAATCGGCCCCATTTGACTTGCTGAACTTTGCAGTTCGT

Insertion site


Left flankDirect repeatRight flankDR Length
GTAATATGTATTAGGTTTAATCCT4
GCGCGTCTCCTTAGGAAGCCCTTT4
CAAGATAAACCTAACGGAGAGGTA4

DNA sequence

CAGGCTGTTGAAATTGAAATAGAGAAAACAGCCTATTTGTGGTACATTGTCGCGCATAACGCTCTACAATTATTGAGGAAAGTTATGCGCGGCTTTGACA
GCAACACAGAAGCTCTCTTTACCTATGTGACACCTGAATCCTTTGTCCCGAAGGACCACCCCTTGCGGGCCATCCGTAAAATGGCCGACGAAGCCCTGGC
AGGGATGGACAAGCTCTTTGACAGCATGTACGCCACAACCGGCCGCTCCTCAATCCCACCGGAGAAGCTCTTGAAAGCCCAACTGCTGATGATCCTCTAC
TCCATCCGCAGCAACCGGCAGTTGGTAGAGCAGATCCATTACAACTTCCTGTTCCGCTGGTTCCTCGGCATGGGCTTGGACGAGAAAGTCTGGGATCATT
CCAGCTTTACCAAGAACAGTGACCGATTGATTGGCTCCGAAGTTGCCGCCGAGTTTCTTTCCCGGGTTCTGGCCCAGGCAGAGCGTAAGCGACTGTTGTC
CCGCGAACACTTCACCGTTGACGGAACTCTCATCGAAGCCTGGGCTTCCATCAAGAGCTTCAAGCCCAAGGATGGACCTCCTTCAGCCGGTGGTGGCGGC
AGAAACGATACCGTGGATTTCAAGGGACAGAAACTTACCAACGAAACCCATGGTTCCACCACTGACCCTGATGCCCGGCTCTACCGCAAGGGGAAGAACA
AGGAAGCCAAGCTCTGCTACCAGGGACATACCCTGATGGAGAATCGTAGTGGCCTCATCATCAGGACCAAGGTGACAACGGCAACCGGTTGCGGTGAGCG
CGACGCAGCAAAGGCCATGGTGCAGCAATTGCCAAGGACGACCCGACGGATCACTCTTGGCTGCGACAAAGGCTACGACACAGAATCATTCGTCAAAGAG
CTGCGTAGGCTAAAGATAACGCCACACGTGGCCCAGAACACCTCCAACAGGAAATCGGCCATCGACGGCAGAACCACCAAGCATCCGAACTACACCATCA
GCCAGAAGATCAGGAAACGAATCGAAGAAGGCTTTGGCTGGATGAAGACCGTGGGCAGCTTACGCAAGACGATGTACCGGGGAATCGAGAAGATCGCCAT
GCAACTTGATCTGCACGCTGCGGCCTACAACCTGGTTCGGATGAAAAACCTGGGTCTCGGTGTCACCTGAGAGGGGAAAACCAGGCTACATCAGCAGTAT
ATGAGGTTGATAAAGAGCAAAAAGAACGAGAAACAAAGGTTCTGAGCAACAAAACTGATTCAAAAAAAAACGAACTGCAAAGTTCAGCAAGTCAAATGGG
GCCGATTTTCAACAGCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1086 bp361 aa851170+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRGFDSNTEALFTYVTPESFVPKDHPLRAIRKMADEALAGMDKLFDSMYATTGRSSIPPEKLLKAQLLMILYSIRSNRQLVEQIHYNFLFRWFLGMGLDE
KVWDHSSFTKNSDRLIGSEVAAEFLSRVLAQAERKRLLSREHFTVDGTLIEAWASIKSFKPKDGPPSAGGGGRNDTVDFKGQKLTNETHGSTTDPDARLY
RKGKNKEAKLCYQGHTLMENRSGLIIRTKVTTATGCGERDAAKAMVQQLPRTTRRITLGCDKGYDTESFVKELRRLKITPHVAQNTSNRKSAIDGRTTKH
PNYTISQKIRKRIEEGFGWMKTVGSLRKTMYRGIEKIAMQLDLHAAAYNLVRMKNLGLGVT

 

Blast result :
Comments
There are 3 copies of ISGsu2 in this strain. Related to the transposase of ISGsu3 in this strain (56% identity/72% similarity at the protein level).
References
1] Methe BA, Nelson KE, Eisen JA, Paulsen IT, Nelson W, Heidelberg JF, Wu D, Wu M, Ward N, Beanan MJ, Dodson RJ, Madupu R, Brinkac LM, Daugherty SC, DeBoy RT, Durkin AS, Gwinn M, Kolonay JF, Sullivan SA, Haft DH, Selengut J, Davidsen TM, Zafar N, White O, Tran B, Romero C, Forberger HA, Weidman J, Khouri H, Feldblyum TV, Utterback TR, Van Aken SE, Lovley DR, Fraser CM. (2003) Science 302 (5652), 1967-1969