ISGsu4
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AE017180 | ND | Geobacter sulfurreducens | Geobacter sulfurreducens PCA |
DNA section
IS Length : 1640 bp
Ends
Left end : GGGATACTGTGTAAGGCCCCCTCTGGGCATACGGATTAGCGTATGCTGGACTTTGGCGAAACCCATTCTCCAAAGGAGGCCTTACACATGAGATTTTACA
Right end : AGAACGGATAAGATGTCGAGATAGATTCGTCAAAGAAAACGACTCAAAATCGGTTGGGCACCATTTTGCCTATTGACTGACTGGGGCCTTATAAGAGTTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGGATACTGTGTAAGGCCCCCTCTGGGCATACGGATTAGCGTATGCTGGACTTTGGCGAAACCCATTCTCCAAAGGAGGCCTTACACATGAGATTTTACA
CTAAGACTCACAAGTACTACTGCGGAATTGATCTTCATGCCCGAAAAAAGTACGTCTGCATTCTCGACTCGGAAGGGACCGTGCTGGTTCATCGCGAAAT
CAACTGCAATCCTGAGAGCTTCCTTCGCCTCGTGGCACCCTACCGGGAGGACTTGGTTGTCGGCGTGGAATGCATGTTCGCATGGTATTGGCTGGCAGAC
CTTTGCCGTAATGAAAAGATCGAGTTTGTGCTCGGTCACGCCCTTTACATGAAGGCAGTCCACGGTGGCAAAGCAAAGAGCGACAAGATTGACGCCCACA
AGATTGCTGTGCTGCTCCGCGGCGGCATGTTTCCCTTAGCCTACGTCTACCCGCCGGAAATGCGGGCAACACGGGACCTCCTGCGCCGCCGGAACTTTTT
CGTCAGAAAACGTGCTGAGCTTATGGCACACATCCAGAACACGGTAACCCAATATAATCTGGCTCCTCTTGGCATTGATCTCGGAGTCGAAGAGAACCGC
CATGAAGTAGCTCAGCTCTTCCACGATCCGGAAGTGAGGAAAATTATCGAAATTGACGTTGCCATGATCGACGCCTTTGACGATGTCATCAATGTCCTCG
AACCGGACATAGAAAAAACGGCCCGGCAACACAACCTGCATGCCCTCAAACTTCTGCGCTCAATCAACGGCGTGGGAAAGGTGCTGGGCCTGGTAATGCT
CTACGAGATCCATGACATAAATCGTTTCCCGACCGTGCAAGACTTCTCTTCCTACTGCAGGCTGGTGAAATGTGCCCACGAATCAGCGGGAAAGAAAAAG
GGGGTCGGCGGTTCCAAGATAGGCAACGTCCATTTGAAATGGGCCTTCTCTGAGGCCGCTGTGTTCTTCGTGCGCCACAATCCCCAGGCAAAAATCCTGA
TGGAGAAACTGGTCAAGATTCATGGCAAAGGGAAAGCGATTTCGATCCTTGCCCACAAACTGGCACGAGCGATTTTCTACATGCTGAAAAACAATGTGCC
GTTCGACCGGGAAAAGTTTTTGGCAACGGCGTAAAGCTGGAGGGGACAGAGGCAGCTTAGTGCACAACTGGAGCCACACGAGCAAGCATGACCACGACCG
TGAAAGACAACGAGGTGCGGCTGAGAACACGTACCGGTCGATTTGATGATGCTCAGGGAGCAAGTTAACGAGATTGGAGCCCTGTCCCGCTCCTTACATA
ACTGAATCTATTCTTTTCAGCTTTTGAATGTTCTGCCCCTCGCCGGAAACCGGGATCAACTGTGCCTCGCACCAGCGATGAGCACGCTTCATGAATGGGA
CGGCCGAGGGAACGGGATAGTTTCTAAGCCGCGCAAGGAATGCCTTCGCAATCGCTGTAGCAGCAACAACCGCAGCGAATTGAGCTTTGATAAGAGTTTG
GTGCAGGATTCTTTCCTGACCCAGTATTGGAAATCAAGTCAGAACGGATAAGATGTCGAGATAGATTCGTCAAAGAAAACGACTCAAAATCGGTTGGGCA
CCATTTTGCCTATTGACTGACTGGGGCCTTATAAGAGTTG
CTAAGACTCACAAGTACTACTGCGGAATTGATCTTCATGCCCGAAAAAAGTACGTCTGCATTCTCGACTCGGAAGGGACCGTGCTGGTTCATCGCGAAAT
CAACTGCAATCCTGAGAGCTTCCTTCGCCTCGTGGCACCCTACCGGGAGGACTTGGTTGTCGGCGTGGAATGCATGTTCGCATGGTATTGGCTGGCAGAC
CTTTGCCGTAATGAAAAGATCGAGTTTGTGCTCGGTCACGCCCTTTACATGAAGGCAGTCCACGGTGGCAAAGCAAAGAGCGACAAGATTGACGCCCACA
AGATTGCTGTGCTGCTCCGCGGCGGCATGTTTCCCTTAGCCTACGTCTACCCGCCGGAAATGCGGGCAACACGGGACCTCCTGCGCCGCCGGAACTTTTT
CGTCAGAAAACGTGCTGAGCTTATGGCACACATCCAGAACACGGTAACCCAATATAATCTGGCTCCTCTTGGCATTGATCTCGGAGTCGAAGAGAACCGC
CATGAAGTAGCTCAGCTCTTCCACGATCCGGAAGTGAGGAAAATTATCGAAATTGACGTTGCCATGATCGACGCCTTTGACGATGTCATCAATGTCCTCG
AACCGGACATAGAAAAAACGGCCCGGCAACACAACCTGCATGCCCTCAAACTTCTGCGCTCAATCAACGGCGTGGGAAAGGTGCTGGGCCTGGTAATGCT
CTACGAGATCCATGACATAAATCGTTTCCCGACCGTGCAAGACTTCTCTTCCTACTGCAGGCTGGTGAAATGTGCCCACGAATCAGCGGGAAAGAAAAAG
GGGGTCGGCGGTTCCAAGATAGGCAACGTCCATTTGAAATGGGCCTTCTCTGAGGCCGCTGTGTTCTTCGTGCGCCACAATCCCCAGGCAAAAATCCTGA
TGGAGAAACTGGTCAAGATTCATGGCAAAGGGAAAGCGATTTCGATCCTTGCCCACAAACTGGCACGAGCGATTTTCTACATGCTGAAAAACAATGTGCC
GTTCGACCGGGAAAAGTTTTTGGCAACGGCGTAAAGCTGGAGGGGACAGAGGCAGCTTAGTGCACAACTGGAGCCACACGAGCAAGCATGACCACGACCG
TGAAAGACAACGAGGTGCGGCTGAGAACACGTACCGGTCGATTTGATGATGCTCAGGGAGCAAGTTAACGAGATTGGAGCCCTGTCCCGCTCCTTACATA
ACTGAATCTATTCTTTTCAGCTTTTGAATGTTCTGCCCCTCGCCGGAAACCGGGATCAACTGTGCCTCGCACCAGCGATGAGCACGCTTCATGAATGGGA
CGGCCGAGGGAACGGGATAGTTTCTAAGCCGCGCAAGGAATGCCTTCGCAATCGCTGTAGCAGCAACAACCGCAGCGAATTGAGCTTTGATAAGAGTTTG
GTGCAGGATTCTTTCCTGACCCAGTATTGGAAATCAAGTCAGAACGGATAAGATGTCGAGATAGATTCGTCAAAGAAAACGACTCAAAATCGGTTGGGCA
CCATTTTGCCTATTGACTGACTGGGGCCTTATAAGAGTTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1047 bp | 348 aa | 88 | 1134 | + | No |
Chemistry : DEDD
ORF sequence :
MRFYTKTHKYYCGIDLHARKKYVCILDSEGTVLVHREINCNPESFLRLVAPYREDLVVGVECMFAWYWLADLCRNEKIEFVLGHALYMKAVHGGKAKSDK
IDAHKIAVLLRGGMFPLAYVYPPEMRATRDLLRRRNFFVRKRAELMAHIQNTVTQYNLAPLGIDLGVEENRHEVAQLFHDPEVRKIIEIDVAMIDAFDDV
INVLEPDIEKTARQHNLHALKLLRSINGVGKVLGLVMLYEIHDINRFPTVQDFSSYCRLVKCAHESAGKKKGVGGSKIGNVHLKWAFSEAAVFFVRHNPQ
AKILMEKLVKIHGKGKAISILAHKLARAIFYMLKNNVPFDREKFLATA
IDAHKIAVLLRGGMFPLAYVYPPEMRATRDLLRRRNFFVRKRAELMAHIQNTVTQYNLAPLGIDLGVEENRHEVAQLFHDPEVRKIIEIDVAMIDAFDDV
INVLEPDIEKTARQHNLHALKLLRSINGVGKVLGLVMLYEIHDINRFPTVQDFSSYCRLVKCAHESAGKKKGVGGSKIGNVHLKWAFSEAAVFFVRHNPQ
AKILMEKLVKIHGKGKAISILAHKLARAIFYMLKNNVPFDREKFLATA
Blast result :
Comments
Closely related to ISGsu5 in this strain. There are 2 copies of ISGsu4 in this strain.
References
1] Methe BA, Nelson KE, Eisen JA, Paulsen IT, Nelson W, Heidelberg JF, Wu D, Wu M, Ward N, Beanan MJ, Dodson RJ, Madupu R, Brinkac LM, Daugherty SC, DeBoy RT, Durkin AS, Gwinn M, Kolonay JF, Sullivan SA, Haft DH, Selengut J, Davidsen TM, Zafar N, White O, Tran B, Romero C, Forberger HA, Weidman J, Khouri H, Feldblyum TV, Utterback TR, Van Aken SE, Lovley DR, Fraser CM. (2003) Science 302 (5652), 1967-1969