ISGsu4

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AE017180 ND Geobacter sulfurreducens
Geobacter sulfurreducens PCA
DNA section
IS Length : 1640 bp

Ends


Left end : GGGATACTGTGTAAGGCCCCCTCTGGGCATACGGATTAGCGTATGCTGGACTTTGGCGAAACCCATTCTCCAAAGGAGGCCTTACACATGAGATTTTACA
Right end : AGAACGGATAAGATGTCGAGATAGATTCGTCAAAGAAAACGACTCAAAATCGGTTGGGCACCATTTTGCCTATTGACTGACTGGGGCCTTATAAGAGTTG

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGGATACTGTGTAAGGCCCCCTCTGGGCATACGGATTAGCGTATGCTGGACTTTGGCGAAACCCATTCTCCAAAGGAGGCCTTACACATGAGATTTTACA
CTAAGACTCACAAGTACTACTGCGGAATTGATCTTCATGCCCGAAAAAAGTACGTCTGCATTCTCGACTCGGAAGGGACCGTGCTGGTTCATCGCGAAAT
CAACTGCAATCCTGAGAGCTTCCTTCGCCTCGTGGCACCCTACCGGGAGGACTTGGTTGTCGGCGTGGAATGCATGTTCGCATGGTATTGGCTGGCAGAC
CTTTGCCGTAATGAAAAGATCGAGTTTGTGCTCGGTCACGCCCTTTACATGAAGGCAGTCCACGGTGGCAAAGCAAAGAGCGACAAGATTGACGCCCACA
AGATTGCTGTGCTGCTCCGCGGCGGCATGTTTCCCTTAGCCTACGTCTACCCGCCGGAAATGCGGGCAACACGGGACCTCCTGCGCCGCCGGAACTTTTT
CGTCAGAAAACGTGCTGAGCTTATGGCACACATCCAGAACACGGTAACCCAATATAATCTGGCTCCTCTTGGCATTGATCTCGGAGTCGAAGAGAACCGC
CATGAAGTAGCTCAGCTCTTCCACGATCCGGAAGTGAGGAAAATTATCGAAATTGACGTTGCCATGATCGACGCCTTTGACGATGTCATCAATGTCCTCG
AACCGGACATAGAAAAAACGGCCCGGCAACACAACCTGCATGCCCTCAAACTTCTGCGCTCAATCAACGGCGTGGGAAAGGTGCTGGGCCTGGTAATGCT
CTACGAGATCCATGACATAAATCGTTTCCCGACCGTGCAAGACTTCTCTTCCTACTGCAGGCTGGTGAAATGTGCCCACGAATCAGCGGGAAAGAAAAAG
GGGGTCGGCGGTTCCAAGATAGGCAACGTCCATTTGAAATGGGCCTTCTCTGAGGCCGCTGTGTTCTTCGTGCGCCACAATCCCCAGGCAAAAATCCTGA
TGGAGAAACTGGTCAAGATTCATGGCAAAGGGAAAGCGATTTCGATCCTTGCCCACAAACTGGCACGAGCGATTTTCTACATGCTGAAAAACAATGTGCC
GTTCGACCGGGAAAAGTTTTTGGCAACGGCGTAAAGCTGGAGGGGACAGAGGCAGCTTAGTGCACAACTGGAGCCACACGAGCAAGCATGACCACGACCG
TGAAAGACAACGAGGTGCGGCTGAGAACACGTACCGGTCGATTTGATGATGCTCAGGGAGCAAGTTAACGAGATTGGAGCCCTGTCCCGCTCCTTACATA
ACTGAATCTATTCTTTTCAGCTTTTGAATGTTCTGCCCCTCGCCGGAAACCGGGATCAACTGTGCCTCGCACCAGCGATGAGCACGCTTCATGAATGGGA
CGGCCGAGGGAACGGGATAGTTTCTAAGCCGCGCAAGGAATGCCTTCGCAATCGCTGTAGCAGCAACAACCGCAGCGAATTGAGCTTTGATAAGAGTTTG
GTGCAGGATTCTTTCCTGACCCAGTATTGGAAATCAAGTCAGAACGGATAAGATGTCGAGATAGATTCGTCAAAGAAAACGACTCAAAATCGGTTGGGCA
CCATTTTGCCTATTGACTGACTGGGGCCTTATAAGAGTTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1047 bp348 aa881134+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MRFYTKTHKYYCGIDLHARKKYVCILDSEGTVLVHREINCNPESFLRLVAPYREDLVVGVECMFAWYWLADLCRNEKIEFVLGHALYMKAVHGGKAKSDK
IDAHKIAVLLRGGMFPLAYVYPPEMRATRDLLRRRNFFVRKRAELMAHIQNTVTQYNLAPLGIDLGVEENRHEVAQLFHDPEVRKIIEIDVAMIDAFDDV
INVLEPDIEKTARQHNLHALKLLRSINGVGKVLGLVMLYEIHDINRFPTVQDFSSYCRLVKCAHESAGKKKGVGGSKIGNVHLKWAFSEAAVFFVRHNPQ
AKILMEKLVKIHGKGKAISILAHKLARAIFYMLKNNVPFDREKFLATA

 

Blast result :
Comments
Closely related to ISGsu5 in this strain. There are 2 copies of ISGsu4 in this strain.
References
1] Methe BA, Nelson KE, Eisen JA, Paulsen IT, Nelson W, Heidelberg JF, Wu D, Wu M, Ward N, Beanan MJ, Dodson RJ, Madupu R, Brinkac LM, Daugherty SC, DeBoy RT, Durkin AS, Gwinn M, Kolonay JF, Sullivan SA, Haft DH, Selengut J, Davidsen TM, Zafar N, White O, Tran B, Romero C, Forberger HA, Weidman J, Khouri H, Feldblyum TV, Utterback TR, Van Aken SE, Lovley DR, Fraser CM. (2003) Science 302 (5652), 1967-1969