ISGsu3
- Family IS5
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AE017180 | ND | Geobacter sulfurreducens | Geobacter sulfurreducens PCA |
DNA section
IS Length : 1343 bp
Ends
IR Length : 14/17
IRL : CAGGTCTTTGAAAAACTATCAGTATTTAGGACCATTTTGACACAGTTTTG
IRR : CAGGGTCTTGAAAAACTCACCGATTGAGCGGTTAAGGCCCCTCATTGGGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAAGGAGGCT | ATAA | ATAATAAAGA | 4 |
DNA sequence
CAGGTCTTTGAAAAACTATCAGTATTTAGGACCATTTTGACACAGTTTTGTGCTATCATGGCGCGCATAACAAGCTGATATTCCAGGAGAATAAATATGC
GCGGTCTTGAGCAACAATCTGATGCTTTGTTCGTTTATCTCTCGCCGGAATCCTTCGTTCCCAAAGACCATCCCCTTCGGCCGATTCGGCAAATGGTAGA
TGCGGCACTGGAAAACCTTTCGCCGGTGTTCAGTAAGATGTACTCCCATACGGGCCGGCCCTCGATTCCGCCGGAGCGCTTGCTCAAAGCCATGCTGCTT
CAGGTGCTGTACTCGATTCCCAGTAACGTCAAGCTGGTTGAGCAGATTCACTTCAGTATCCTGTTCCGCTGGTTCCTTGGCCTGGGCCTGGATGATCCAG
TTTGGGATAATTCCAGCTTCAGCACGAATCAGGAGCGGTTGATCGAGACCGATGTTGCCACGCAGTTCCTGGAGGCAGTACTTGATCAGGCGAAATGCAA
GAAACTGCTCTCCAAAGATCACTTCAGTGTTGATGGCACCCTGATCCAGTCATGGGCCTCCATCAAGAGCTTCAAGTCACGGGACGATGATGACGGGCAA
CCGCCTGCCGGCAAGAATCCGGGCCGTGATTTCCAGGGTGAGAAGCTGAGCAACGCGACTCATGCATCCACTACCGATCCTGAAGCGAAGCTCTATCGCA
AGGGGATCAACCATGAACCGCGATTGTCGTTTGCCGCCCACCTGCTGACCGAAAACCGTCACGGCTTGGTTATGGCAAGCAGGGTGACCATTGCCGATGG
TTTTGCCGAACGGGAAACCGCCAAGAGCTTGATTGCCAAGGTTGCTTCCGGCACGCGGCGTAGAACGATTGCCGCCGACAGGAACTATGATACCCACGAC
TTCGTTAGGGCCATGCGGACTCTGAAAGTTACGCCGCACGTCACGCAAAACCACAAGAAGAAGGGCGGTTCATCCATCGATGGCCGCACCACAAGGCATG
ACGGCTACGGAGTTAGCCAGACATTTCGCAAACGAATCGAAGAGGTCTTTGGCTGGCTCAAGACCGTTGGACTGTTCCGCAAGACCCGCTACAGGGGAGT
CAGGAAGATCGACTGGCACTTTACCCTGGCAGTAACAGCTTACAACTTGGTCCGAATGCGAAACCTGGGGGTATGTACCACCTGAACGGGGCAAATGCGC
CCGAAAGGCAATGATAAGGCCGATTAACAGGCCAAAAACGAGTTTCAAAGAGCATAATTTTAACGAGTAAAACAGCTAAGTTGCCAAATTTTGCCCCAAT
GAGGGGCCTTAACCGCTCAATCGGTGAGTTTTTCAAGACCCTG
GCGGTCTTGAGCAACAATCTGATGCTTTGTTCGTTTATCTCTCGCCGGAATCCTTCGTTCCCAAAGACCATCCCCTTCGGCCGATTCGGCAAATGGTAGA
TGCGGCACTGGAAAACCTTTCGCCGGTGTTCAGTAAGATGTACTCCCATACGGGCCGGCCCTCGATTCCGCCGGAGCGCTTGCTCAAAGCCATGCTGCTT
CAGGTGCTGTACTCGATTCCCAGTAACGTCAAGCTGGTTGAGCAGATTCACTTCAGTATCCTGTTCCGCTGGTTCCTTGGCCTGGGCCTGGATGATCCAG
TTTGGGATAATTCCAGCTTCAGCACGAATCAGGAGCGGTTGATCGAGACCGATGTTGCCACGCAGTTCCTGGAGGCAGTACTTGATCAGGCGAAATGCAA
GAAACTGCTCTCCAAAGATCACTTCAGTGTTGATGGCACCCTGATCCAGTCATGGGCCTCCATCAAGAGCTTCAAGTCACGGGACGATGATGACGGGCAA
CCGCCTGCCGGCAAGAATCCGGGCCGTGATTTCCAGGGTGAGAAGCTGAGCAACGCGACTCATGCATCCACTACCGATCCTGAAGCGAAGCTCTATCGCA
AGGGGATCAACCATGAACCGCGATTGTCGTTTGCCGCCCACCTGCTGACCGAAAACCGTCACGGCTTGGTTATGGCAAGCAGGGTGACCATTGCCGATGG
TTTTGCCGAACGGGAAACCGCCAAGAGCTTGATTGCCAAGGTTGCTTCCGGCACGCGGCGTAGAACGATTGCCGCCGACAGGAACTATGATACCCACGAC
TTCGTTAGGGCCATGCGGACTCTGAAAGTTACGCCGCACGTCACGCAAAACCACAAGAAGAAGGGCGGTTCATCCATCGATGGCCGCACCACAAGGCATG
ACGGCTACGGAGTTAGCCAGACATTTCGCAAACGAATCGAAGAGGTCTTTGGCTGGCTCAAGACCGTTGGACTGTTCCGCAAGACCCGCTACAGGGGAGT
CAGGAAGATCGACTGGCACTTTACCCTGGCAGTAACAGCTTACAACTTGGTCCGAATGCGAAACCTGGGGGTATGTACCACCTGAACGGGGCAAATGCGC
CCGAAAGGCAATGATAAGGCCGATTAACAGGCCAAAAACGAGTTTCAAAGAGCATAATTTTAACGAGTAAAACAGCTAAGTTGCCAAATTTTGCCCCAAT
GAGGGGCCTTAACCGCTCAATCGGTGAGTTTTTCAAGACCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1089 bp | 362 aa | 97 | 1185 | + | No |
Chemistry : DDE
ORF sequence :
MRGLEQQSDALFVYLSPESFVPKDHPLRPIRQMVDAALENLSPVFSKMYSHTGRPSIPPERLLKAMLLQVLYSIPSNVKLVEQIHFSILFRWFLGLGLDD
PVWDNSSFSTNQERLIETDVATQFLEAVLDQAKCKKLLSKDHFSVDGTLIQSWASIKSFKSRDDDDGQPPAGKNPGRDFQGEKLSNATHASTTDPEAKLY
RKGINHEPRLSFAAHLLTENRHGLVMASRVTIADGFAERETAKSLIAKVASGTRRRTIAADRNYDTHDFVRAMRTLKVTPHVTQNHKKKGGSSIDGRTTR
HDGYGVSQTFRKRIEEVFGWLKTVGLFRKTRYRGVRKIDWHFTLAVTAYNLVRMRNLGVCTT
PVWDNSSFSTNQERLIETDVATQFLEAVLDQAKCKKLLSKDHFSVDGTLIQSWASIKSFKSRDDDDGQPPAGKNPGRDFQGEKLSNATHASTTDPEAKLY
RKGINHEPRLSFAAHLLTENRHGLVMASRVTIADGFAERETAKSLIAKVASGTRRRTIAADRNYDTHDFVRAMRTLKVTPHVTQNHKKKGGSSIDGRTTR
HDGYGVSQTFRKRIEEVFGWLKTVGLFRKTRYRGVRKIDWHFTLAVTAYNLVRMRNLGVCTT
Blast result :
Comments
Related to the transposase of ISGsu2 in this strain (56% identity/72% similarity at the protein level). There is one intact copy and one truncated copy in this strain.
References
1] Methe BA, Nelson KE, Eisen JA, Paulsen IT, Nelson W, Heidelberg JF, Wu D, Wu M, Ward N, Beanan MJ, Dodson RJ, Madupu R, Brinkac LM, Daugherty SC, DeBoy RT, Durkin AS, Gwinn M, Kolonay JF, Sullivan SA, Haft DH, Selengut J, Davidsen TM, Zafar N, White O, Tran B, Romero C, Forberger HA, Weidman J, Khouri H, Feldblyum TV, Utterback TR, Van Aken SE, Lovley DR, Fraser CM. (2003) Science 302 (5652), 1967-1969