ISGsu3

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AE017180 ND Geobacter sulfurreducens
Geobacter sulfurreducens PCA
DNA section
IS Length : 1343 bp

Ends


IR Length : 14/17

IRL : CAGGTCTTTGAAAAACTATCAGTATTTAGGACCATTTTGACACAGTTTTG
IRR : CAGGGTCTTGAAAAACTCACCGATTGAGCGGTTAAGGCCCCTCATTGGGG

Insertion site


Left flankDirect repeatRight flankDR Length
AAAGGAGGCTATAAATAATAAAGA4

DNA sequence

CAGGTCTTTGAAAAACTATCAGTATTTAGGACCATTTTGACACAGTTTTGTGCTATCATGGCGCGCATAACAAGCTGATATTCCAGGAGAATAAATATGC
GCGGTCTTGAGCAACAATCTGATGCTTTGTTCGTTTATCTCTCGCCGGAATCCTTCGTTCCCAAAGACCATCCCCTTCGGCCGATTCGGCAAATGGTAGA
TGCGGCACTGGAAAACCTTTCGCCGGTGTTCAGTAAGATGTACTCCCATACGGGCCGGCCCTCGATTCCGCCGGAGCGCTTGCTCAAAGCCATGCTGCTT
CAGGTGCTGTACTCGATTCCCAGTAACGTCAAGCTGGTTGAGCAGATTCACTTCAGTATCCTGTTCCGCTGGTTCCTTGGCCTGGGCCTGGATGATCCAG
TTTGGGATAATTCCAGCTTCAGCACGAATCAGGAGCGGTTGATCGAGACCGATGTTGCCACGCAGTTCCTGGAGGCAGTACTTGATCAGGCGAAATGCAA
GAAACTGCTCTCCAAAGATCACTTCAGTGTTGATGGCACCCTGATCCAGTCATGGGCCTCCATCAAGAGCTTCAAGTCACGGGACGATGATGACGGGCAA
CCGCCTGCCGGCAAGAATCCGGGCCGTGATTTCCAGGGTGAGAAGCTGAGCAACGCGACTCATGCATCCACTACCGATCCTGAAGCGAAGCTCTATCGCA
AGGGGATCAACCATGAACCGCGATTGTCGTTTGCCGCCCACCTGCTGACCGAAAACCGTCACGGCTTGGTTATGGCAAGCAGGGTGACCATTGCCGATGG
TTTTGCCGAACGGGAAACCGCCAAGAGCTTGATTGCCAAGGTTGCTTCCGGCACGCGGCGTAGAACGATTGCCGCCGACAGGAACTATGATACCCACGAC
TTCGTTAGGGCCATGCGGACTCTGAAAGTTACGCCGCACGTCACGCAAAACCACAAGAAGAAGGGCGGTTCATCCATCGATGGCCGCACCACAAGGCATG
ACGGCTACGGAGTTAGCCAGACATTTCGCAAACGAATCGAAGAGGTCTTTGGCTGGCTCAAGACCGTTGGACTGTTCCGCAAGACCCGCTACAGGGGAGT
CAGGAAGATCGACTGGCACTTTACCCTGGCAGTAACAGCTTACAACTTGGTCCGAATGCGAAACCTGGGGGTATGTACCACCTGAACGGGGCAAATGCGC
CCGAAAGGCAATGATAAGGCCGATTAACAGGCCAAAAACGAGTTTCAAAGAGCATAATTTTAACGAGTAAAACAGCTAAGTTGCCAAATTTTGCCCCAAT
GAGGGGCCTTAACCGCTCAATCGGTGAGTTTTTCAAGACCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1089 bp362 aa971185+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRGLEQQSDALFVYLSPESFVPKDHPLRPIRQMVDAALENLSPVFSKMYSHTGRPSIPPERLLKAMLLQVLYSIPSNVKLVEQIHFSILFRWFLGLGLDD
PVWDNSSFSTNQERLIETDVATQFLEAVLDQAKCKKLLSKDHFSVDGTLIQSWASIKSFKSRDDDDGQPPAGKNPGRDFQGEKLSNATHASTTDPEAKLY
RKGINHEPRLSFAAHLLTENRHGLVMASRVTIADGFAERETAKSLIAKVASGTRRRTIAADRNYDTHDFVRAMRTLKVTPHVTQNHKKKGGSSIDGRTTR
HDGYGVSQTFRKRIEEVFGWLKTVGLFRKTRYRGVRKIDWHFTLAVTAYNLVRMRNLGVCTT

 

Blast result :
Comments
Related to the transposase of ISGsu2 in this strain (56% identity/72% similarity at the protein level). There is one intact copy and one truncated copy in this strain.
References
1] Methe BA, Nelson KE, Eisen JA, Paulsen IT, Nelson W, Heidelberg JF, Wu D, Wu M, Ward N, Beanan MJ, Dodson RJ, Madupu R, Brinkac LM, Daugherty SC, DeBoy RT, Durkin AS, Gwinn M, Kolonay JF, Sullivan SA, Haft DH, Selengut J, Davidsen TM, Zafar N, White O, Tran B, Romero C, Forberger HA, Weidman J, Khouri H, Feldblyum TV, Utterback TR, Van Aken SE, Lovley DR, Fraser CM. (2003) Science 302 (5652), 1967-1969