ISBlo7
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004307 | ND | Bifidobacterium longum | Bifidobacterium longum NCC2705 |
DNA section
IS Length : 1272 bp
Ends
IR Length : 22/28
IRL : CCCGGGTTCTAAATAGAAGTGCAACACCTTGTCTAAGGTTGGAAGTGTTC
IRR : CCCGATGTCTATTTAGAGGTGCAACACCCCCTGTTGGTCCTGCAATTATA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
CCCGGGTTCTAAATAGAAGTGCAACACCTTGTCTAAGGTTGGAAGTGTTCGAAGTTTCTAACTTAAGAAGGTGTTGCACTCATGGGTCAACAGTATTCGC
ACCTGTCGTCCGAGGAGAGGATCCTGATCGAGAAGCTGCATTGCGAACAGCATCTGAGCATTCGGCGAACCGCGGAGAGGATCGGCCGGGACAAGTCCAC
GGTGTCACGCGAGCTGAGGCGCGGCCTGTGGTTCGCGTCCAACGAGAACGGGTCGTACCGTCCCTACCGGCCGAAACGGCTGAAGACCGGGCCGTGGACC
TCGGGTCCGTTCTATTCGGCGCTGGCCGCGCAGAGGAAGGCGGACCTGCGCCGGCGCGGATCCCGCAAGCCGCGTCGCATGGACTCGGACCGGCTTCGCG
CCTGGGTGCTGGACTCGCTGCGCAGGGGGTGGAGCCCGGAACTGATCGAGGGACGGTTGAAGGCCCGGTACGCCGGCGACCCGTCGATGCGGATCAGCCA
CGAGTGCCTTTACCAGTGGATCTACGCCAAGCCGCAGCGGGCGCTGGACCTGCGCCAGTACCTGGCGCGCGGCAGGAAACGCCGGACGAGGAAAAAGGGC
AGGAAGGCGAAAGGGCCGCGCATCCCGATGCGCGCGCCCATCGCAGACCGGCCCGAGGCGGTCAGATCCAGGAAGGGGTTCGGCCATTTCGAGTCGGACA
CGGTGGTCGGCGCCGCGCCGTCGAGGCGCTGCATGAACACGCAGGTGGAGCGCAGGAGCCGCAGGCTGTTCGCCCGGCTCGTCGACGACAAGAGCGCGTC
CGCCACGGCCAGGGCCGAATACGAGATCTTCAAGGACATCCCGCCGGCCGCGCGCGTCGACCGCACGTGGGACAACGGCACGGAGGCGAGCCTGCACATG
CTGGTGGACGAGGCGCTGGGCATGCTCACGTACTTCGCCGACCCGTACAGTTCCTGGCAGCGTGGCAGCAACGAGAACAGGAACGGCAGGATCCGCCGCT
ATCTGCCCAAAGGAACCGGGTTCGGGGACTTGGCCCAGGAGGACCTCGACGCGATCGTCGGTGAGATCAACGACACCCCGATGAAGCTCCTCGGCTACAA
AACGCCCAACGAGGTATGGGACGAGGAGATCGCCAAGCTACAATCGAAGGCAGCCAGCCCGAACACAAGCGTTGCGCTTACAAATTGAATCCGGCCCGCC
GAGGCATTCGCCGACGAACTGCTATAATTGCAGGACCAACAGGGGGTGTTGCACCTCTAAATAGACATCGGG
ACCTGTCGTCCGAGGAGAGGATCCTGATCGAGAAGCTGCATTGCGAACAGCATCTGAGCATTCGGCGAACCGCGGAGAGGATCGGCCGGGACAAGTCCAC
GGTGTCACGCGAGCTGAGGCGCGGCCTGTGGTTCGCGTCCAACGAGAACGGGTCGTACCGTCCCTACCGGCCGAAACGGCTGAAGACCGGGCCGTGGACC
TCGGGTCCGTTCTATTCGGCGCTGGCCGCGCAGAGGAAGGCGGACCTGCGCCGGCGCGGATCCCGCAAGCCGCGTCGCATGGACTCGGACCGGCTTCGCG
CCTGGGTGCTGGACTCGCTGCGCAGGGGGTGGAGCCCGGAACTGATCGAGGGACGGTTGAAGGCCCGGTACGCCGGCGACCCGTCGATGCGGATCAGCCA
CGAGTGCCTTTACCAGTGGATCTACGCCAAGCCGCAGCGGGCGCTGGACCTGCGCCAGTACCTGGCGCGCGGCAGGAAACGCCGGACGAGGAAAAAGGGC
AGGAAGGCGAAAGGGCCGCGCATCCCGATGCGCGCGCCCATCGCAGACCGGCCCGAGGCGGTCAGATCCAGGAAGGGGTTCGGCCATTTCGAGTCGGACA
CGGTGGTCGGCGCCGCGCCGTCGAGGCGCTGCATGAACACGCAGGTGGAGCGCAGGAGCCGCAGGCTGTTCGCCCGGCTCGTCGACGACAAGAGCGCGTC
CGCCACGGCCAGGGCCGAATACGAGATCTTCAAGGACATCCCGCCGGCCGCGCGCGTCGACCGCACGTGGGACAACGGCACGGAGGCGAGCCTGCACATG
CTGGTGGACGAGGCGCTGGGCATGCTCACGTACTTCGCCGACCCGTACAGTTCCTGGCAGCGTGGCAGCAACGAGAACAGGAACGGCAGGATCCGCCGCT
ATCTGCCCAAAGGAACCGGGTTCGGGGACTTGGCCCAGGAGGACCTCGACGCGATCGTCGGTGAGATCAACGACACCCCGATGAAGCTCCTCGGCTACAA
AACGCCCAACGAGGTATGGGACGAGGAGATCGCCAAGCTACAATCGAAGGCAGCCAGCCCGAACACAAGCGTTGCGCTTACAAATTGAATCCGGCCCGCC
GAGGCATTCGCCGACGAACTGCTATAATTGCAGGACCAACAGGGGGTGTTGCACCTCTAAATAGACATCGGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1107 bp | 368 aa | 82 | 1188 | + | No |
Chemistry : DDE
ORF sequence :
MGQQYSHLSSEERILIEKLHCEQHLSIRRTAERIGRDKSTVSRELRRGLWFASNENGSYRPYRPKRLKTGPWTSGPFYSALAAQRKADLRRRGSRKPRRM
DSDRLRAWVLDSLRRGWSPELIEGRLKARYAGDPSMRISHECLYQWIYAKPQRALDLRQYLARGRKRRTRKKGRKAKGPRIPMRAPIADRPEAVRSRKGF
GHFESDTVVGAAPSRRCMNTQVERRSRRLFARLVDDKSASATARAEYEIFKDIPPAARVDRTWDNGTEASLHMLVDEALGMLTYFADPYSSWQRGSNENR
NGRIRRYLPKGTGFGDLAQEDLDAIVGEINDTPMKLLGYKTPNEVWDEEIAKLQSKAASPNTSVALTN
DSDRLRAWVLDSLRRGWSPELIEGRLKARYAGDPSMRISHECLYQWIYAKPQRALDLRQYLARGRKRRTRKKGRKAKGPRIPMRAPIADRPEAVRSRKGF
GHFESDTVVGAAPSRRCMNTQVERRSRRLFARLVDDKSASATARAEYEIFKDIPPAARVDRTWDNGTEASLHMLVDEALGMLTYFADPYSSWQRGSNENR
NGRIRRYLPKGTGFGDLAQEDLDAIVGEINDTPMKLLGYKTPNEVWDEEIAKLQSKAASPNTSVALTN
Blast result :
Comments
There is one full copy of this element in the genome of NCC2705 and two additional pieces showing good homology with the full copy, especially with about 100 bp of the IR. They are considered as remains of ISBlo7, but could also be remnants of another closely related element.
Coordinates:
ISBlo7a complement(1942585..1943856)
ISBlo7b 75916..76559
ISBlo7c 1516902..1517107
Coordinates:
ISBlo7a complement(1942585..1943856)
ISBlo7b 75916..76559
ISBlo7c 1516902..1517107
References
1] Schell,M.A., Karmirantzou,M., Snel,B., Vilanova,D., Berger,B., Pessi,G., Zwahlen,M.-C., Desiere,F., Bork,P., Delley,M., Pridmore,D. and Arigoni,F. (2002)Proc. Natl. Acad. Sci. U.S.A. 99 (22), 14422-14427