ISBlo2
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004307 | ND | Bifidobacterium longum | Bifidobacterium longum NCC2705 Bifidobacterium longum subsp. infantis 157F |
DNA section
IS Length : 2455 bp
Ends
IR Length : 51/76
IRL : TGTTTGTGTTCAATTAGTTGTTGCGGGTTTAGTCACGATGATTTTTCGGG
IRR : TGTATTTCGTCAAGTCGGTGTTTCGTGTTTAGTCATGTATTTTTTTCGGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGGCAAGACC | CATCTCGC | GGTCGCGTTG | 8 |
GTGCATCATC | CT/ACGAG | CACAGGCGGT | 8 |
DNA sequence
TGTTTGTGTTCAATTAGTTGTTGCGGGTTTAGTCACGATGATTTTTCGGGTTTAGGCAGAGCATGCCGACCACGGAATGGTCTTAACTGGATGGTGCTTG
TATCTCCGCCAGAAAGGACCGGAAAGGATTATGATCAGCATGCCCCAAGTACAGTCTATCCGTCGTTTGCGGCGGAACGGGGAATCCGTCGCGTCGATCG
CGCGGAAAACACATGTCAGCGAGCCGACGGTGCGTAAGTACCTCGCGAAGGAGGATCTGTCGGCCGTGCCGTCGGTGAGAAAGCCGCGCGCGTCGGTGAT
CGACCCGTATCTGCCCGTGATCGAGCAGTGGCTCGCGGAGGATCGCGCGAACTGGCGCAAGCAGCGGCATACCGCGACCAGGATCTGGGAGCGGTTGAGG
GACGAGCATGGCGCGGAGGTCTCCCTGTCCACGGTGACGCGGGCGGTGGCGCGGCTCAGGCGTGAGTTCGCGGCGGAGCGTGATGAGGCGTTCATGGATC
TGGTATGGCATCCAGGCGAGGCGCAGGCCGATTTCGGCGAGGTCGACGTGCTGTTGCGCGGCGTGGTGCAGCGGATGCATCATTTCGTGCTTGATTTCCC
GTATTCGAACGTCGGTCTGGTGCAGTTGATGCCGGGCGAGAACGCTGAGTGCACGTGCCTGGCGTTGCGCAACCTGTTCGAGTGGCTGGGCGGTGTGCCG
GAGCGGATCGTGTTCGATAACGCCGCCGGCGTGGGCCATAAGGGGTACGGGGAGCGCGAGCCGCGCCTGACGCACCTGTTCCAGGCCTTCCAGGCGCATT
ACGGGTTCGATTGTTCGTTCTGCAACCCGTATTCCGGTCATGAGAAGGGCGCGGTGGAGTCCAAGGTCGGCATGGTGCGGCGCAAGCTGTTCGTGCCCCG
GCCGAGCGTATGGAGCCTGGAGAACTTCAGCGCCGGGCTGCCGGACCGGTGCCTGGAGCTGGCCACGAAACCGCATTACCGCAAGGACACGGAGGAACGT
GGCCTGTTCTCCGAGGACCGTGCGGCGCTGCTGCCGTTGCCCGGGAAGCGTTTCGACGTGGTCACGTGGCGGCATATGAAGGCCGACCGGTACGGCGTGG
CCGCGCCCGGGGACGGCATCGCTGTTCCGCGGACCGGGCGAACGCGGGCAGAGGGGTGATCGTGGGCCTCCGCGCGCTCGAGGTCGAGGTCCTCGACTCG
TCGGGCAAGCATCTGGCGACCCATCCTCGGGCGTACGGCCAGGCCAGCACGAACAGCGAGGACCCGTCCATGCAGTTGGCGCTGCTGTGCAACAAGCCCG
CGTCCTGGCCCAACAGCCGGGTACGTGACGCGTTGCCGGACCCGTTGCGGGAATGGCTGGATCGGCAGGACAGACAGACACGCAACGAGGCGCTGCAGAC
CCTCAAACGCGTTGACAGGGAATCCGGGTGGGCGAACGCGGTCGAGGCGATGCTTTCCATCCTCGAATCGACCGGCGGGGCGGACCGCGCCGGTGTCACA
CTGCTCGCGGCCAGGCTCGCCGAGGGCGTGGCGGGTATCGAATACGACGATGACAGGCCGGATCCGGGTGAATACGACATCGCGTTCACCGCGGACGTCG
GCGTGCAGGAAGGCGGGCGATGAACACGAAGACGGACGAAGGGCTCTACGAGAAGGCCCGCAAGCTGTTCATCTCCAAGGCGAGCATCGACGAATTCGCC
GGCTGGGCCACGCCCCGCCAGGTCGACGCCGTCCACCGCCTGCTCGACACGGAACTGGCGAACAGGGAACGCGCGAAGCACGACAGGCTCCTGCGCCGCG
CCCGGTTCCCCGTCGTCAAGGGTCTCGACGGCTACGACTTCACGAACGTCAGGCTCCCCGACGGCTACATGCTCGATGAGCTCCTAGGGCTCGGTTTCAT
CCCGCGCGCGCAGGACCTGGTGTTCTACGGCAAGACCGGGCGCGGAAAGACACATCTCGCGATCGGGCTGGGCATGAAGGCGATCGACATGGGGCTGGGC
GTGCGGTTCCATCAGACCGCCGAGCTCGTCCTCCAGCTGGGCAAGGCCAAACGCGACGGCACGCTCGAGACGATGCTCCGGGACATCGGCCGTGCCGACC
TGATCATACTGGACGAGTTCGGCTACGTACCCTTCGACATCGACGGGGCGCGCCTGCTCTACCGGATCATCGCGGGCAGCTACGAAAGACGGAGCATCAT
ATTCACCACGAACATCGAGTTCAGTAAATGGGGCACGGTCTTCGCGGACGACAAACTCGCCGCAGCGATCATCGACCGCATCGTGCACCACGGGCGGCTC
CTCGAGTTCACCGGCCAGAGCCGCCGCGTCAGTGAGGCCCTCATGTTCGGCAGGAACACCTCCGCGCAACCGGAAAAATAAGGAAAATGCATGCAACTGC
CTAAACCCGAAAAAAATACATGACTAAACACGAAACACCGACTTGACGAAATACA
TATCTCCGCCAGAAAGGACCGGAAAGGATTATGATCAGCATGCCCCAAGTACAGTCTATCCGTCGTTTGCGGCGGAACGGGGAATCCGTCGCGTCGATCG
CGCGGAAAACACATGTCAGCGAGCCGACGGTGCGTAAGTACCTCGCGAAGGAGGATCTGTCGGCCGTGCCGTCGGTGAGAAAGCCGCGCGCGTCGGTGAT
CGACCCGTATCTGCCCGTGATCGAGCAGTGGCTCGCGGAGGATCGCGCGAACTGGCGCAAGCAGCGGCATACCGCGACCAGGATCTGGGAGCGGTTGAGG
GACGAGCATGGCGCGGAGGTCTCCCTGTCCACGGTGACGCGGGCGGTGGCGCGGCTCAGGCGTGAGTTCGCGGCGGAGCGTGATGAGGCGTTCATGGATC
TGGTATGGCATCCAGGCGAGGCGCAGGCCGATTTCGGCGAGGTCGACGTGCTGTTGCGCGGCGTGGTGCAGCGGATGCATCATTTCGTGCTTGATTTCCC
GTATTCGAACGTCGGTCTGGTGCAGTTGATGCCGGGCGAGAACGCTGAGTGCACGTGCCTGGCGTTGCGCAACCTGTTCGAGTGGCTGGGCGGTGTGCCG
GAGCGGATCGTGTTCGATAACGCCGCCGGCGTGGGCCATAAGGGGTACGGGGAGCGCGAGCCGCGCCTGACGCACCTGTTCCAGGCCTTCCAGGCGCATT
ACGGGTTCGATTGTTCGTTCTGCAACCCGTATTCCGGTCATGAGAAGGGCGCGGTGGAGTCCAAGGTCGGCATGGTGCGGCGCAAGCTGTTCGTGCCCCG
GCCGAGCGTATGGAGCCTGGAGAACTTCAGCGCCGGGCTGCCGGACCGGTGCCTGGAGCTGGCCACGAAACCGCATTACCGCAAGGACACGGAGGAACGT
GGCCTGTTCTCCGAGGACCGTGCGGCGCTGCTGCCGTTGCCCGGGAAGCGTTTCGACGTGGTCACGTGGCGGCATATGAAGGCCGACCGGTACGGCGTGG
CCGCGCCCGGGGACGGCATCGCTGTTCCGCGGACCGGGCGAACGCGGGCAGAGGGGTGATCGTGGGCCTCCGCGCGCTCGAGGTCGAGGTCCTCGACTCG
TCGGGCAAGCATCTGGCGACCCATCCTCGGGCGTACGGCCAGGCCAGCACGAACAGCGAGGACCCGTCCATGCAGTTGGCGCTGCTGTGCAACAAGCCCG
CGTCCTGGCCCAACAGCCGGGTACGTGACGCGTTGCCGGACCCGTTGCGGGAATGGCTGGATCGGCAGGACAGACAGACACGCAACGAGGCGCTGCAGAC
CCTCAAACGCGTTGACAGGGAATCCGGGTGGGCGAACGCGGTCGAGGCGATGCTTTCCATCCTCGAATCGACCGGCGGGGCGGACCGCGCCGGTGTCACA
CTGCTCGCGGCCAGGCTCGCCGAGGGCGTGGCGGGTATCGAATACGACGATGACAGGCCGGATCCGGGTGAATACGACATCGCGTTCACCGCGGACGTCG
GCGTGCAGGAAGGCGGGCGATGAACACGAAGACGGACGAAGGGCTCTACGAGAAGGCCCGCAAGCTGTTCATCTCCAAGGCGAGCATCGACGAATTCGCC
GGCTGGGCCACGCCCCGCCAGGTCGACGCCGTCCACCGCCTGCTCGACACGGAACTGGCGAACAGGGAACGCGCGAAGCACGACAGGCTCCTGCGCCGCG
CCCGGTTCCCCGTCGTCAAGGGTCTCGACGGCTACGACTTCACGAACGTCAGGCTCCCCGACGGCTACATGCTCGATGAGCTCCTAGGGCTCGGTTTCAT
CCCGCGCGCGCAGGACCTGGTGTTCTACGGCAAGACCGGGCGCGGAAAGACACATCTCGCGATCGGGCTGGGCATGAAGGCGATCGACATGGGGCTGGGC
GTGCGGTTCCATCAGACCGCCGAGCTCGTCCTCCAGCTGGGCAAGGCCAAACGCGACGGCACGCTCGAGACGATGCTCCGGGACATCGGCCGTGCCGACC
TGATCATACTGGACGAGTTCGGCTACGTACCCTTCGACATCGACGGGGCGCGCCTGCTCTACCGGATCATCGCGGGCAGCTACGAAAGACGGAGCATCAT
ATTCACCACGAACATCGAGTTCAGTAAATGGGGCACGGTCTTCGCGGACGACAAACTCGCCGCAGCGATCATCGACCGCATCGTGCACCACGGGCGGCTC
CTCGAGTTCACCGGCCAGAGCCGCCGCGTCAGTGAGGCCCTCATGTTCGGCAGGAACACCTCCGCGCAACCGGAAAAATAAGGAAAATGCATGCAACTGC
CTAAACCCGAAAAAAATACATGACTAAACACGAAACACCGACTTGACGAAATACA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1484 bp | 494 aa | 140 | 1623 | + | Yes |
Chemistry : DDE
ORF sequence :
MPQVQSIRRLRRNGESVASIARKTHVSEPTVRKYLAKEDLSAVPSVRKPRASVIDPYLPVIEQWLAEDRANWRKQRHTATRIWERLRDEHGAEVSLSTVT
RAVARLRREFAAERDEAFMDLVWHPGEAQADFGEVDVLLRGVVQRMHHFVLDFPYSNVGLVQLMPGENAECTCLALRNLFEWLGGVPERIVFDNAAGVGH
KGYGEREPRLTHLFQAFQAHYGFDCSFCNPYSGHEKGAVESKVGMVRRKLFVPRPSVWSLENFSAGLPDRCLELATKPHYRKDTEERGLFSEDRAALLPL
PGKRFDVVTWRHMKADRYGVAAPGDGIAVPRTGRTRAEGVIVGLRALEVEVLDSSGKHLATHPRAYGQASTNSEDPSMQLALLCNKPASWPNSRVRDALP
DPLREWLDRQDRQTRNEALQTLKRVDRESGWANAVEAMLSILESTGGADRAGVTLLAARLAEGVAGIEYDDDRPDPGEYDIAFTADVGVQEGGR
RAVARLRREFAAERDEAFMDLVWHPGEAQADFGEVDVLLRGVVQRMHHFVLDFPYSNVGLVQLMPGENAECTCLALRNLFEWLGGVPERIVFDNAAGVGH
KGYGEREPRLTHLFQAFQAHYGFDCSFCNPYSGHEKGAVESKVGMVRRKLFVPRPSVWSLENFSAGLPDRCLELATKPHYRKDTEERGLFSEDRAALLPL
PGKRFDVVTWRHMKADRYGVAAPGDGIAVPRTGRTRAEGVIVGLRALEVEVLDSSGKHLATHPRAYGQASTNSEDPSMQLALLCNKPASWPNSRVRDALP
DPLREWLDRQDRQTRNEALQTLKRVDRESGWANAVEAMLSILESTGGADRAGVTLLAARLAEGVAGIEYDDDRPDPGEYDIAFTADVGVQEGGR
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
762 bp | 253 aa | 1620 | 2381 | + | No |
AG : IS21 helper
ORF sequence :
MNTKTDEGLYEKARKLFISKASIDEFAGWATPRQVDAVHRLLDTELANRERAKHDRLLRRARFPVVKGLDGYDFTNVRLPDGYMLDELLGLGFIPRAQDL
VFYGKTGRGKTHLAIGLGMKAIDMGLGVRFHQTAELVLQLGKAKRDGTLETMLRDIGRADLIILDEFGYVPFDIDGARLLYRIIAGSYERRSIIFTTNIE
FSKWGTVFADDKLAAAIIDRIVHHGRLLEFTGQSRRVSEALMFGRNTSAQPEK
VFYGKTGRGKTHLAIGLGMKAIDMGLGVRFHQTAELVLQLGKAKRDGTLETMLRDIGRADLIILDEFGYVPFDIDGARLLYRIIAGSYERRSIIFTTNIE
FSKWGTVFADDKLAAAIIDRIVHHGRLLEFTGQSRRVSEALMFGRNTSAQPEK
Blast result :
Comments
References
1] Schell,M.A., Karmirantzou,M., Snel,B., Vilanova,D., Berger,B., Pessi,G., Zwahlen,M.-C., Desiere,F., Bork,P., Delley,M., Pridmore,D. and Arigoni,F. (2002)Proc. Natl. Acad. Sci. U.S.A. 99 (22), 14422-14427