ISPsy11
- Family IS3
- Group IS3
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AE016853 | ND | Pseudomonas syringae | Pseudomonas syringae DC3000 |
DNA section
IS Length : 1313 bp
Ends
IR Length : 24/28
IRL : TGTCCCGTCCTGAATAAGGTTTACACCTTCTGACCTTTCCTCAGGAGGAC
IRR : TGTCTAGTCCTGAAATAGGTTTACACCTGTTTCACGCTCAAAACGCCCGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTATTTCTT | CCT | CCACAACGAA | 3 |
TTTTTGTGTG | CTT | TCATTCAGCC | 3 |
TTTGTTTTAA | CGT | TATCCAGATT | 3 |
DNA sequence
TGTCCCGTCCTGAATAAGGTTTACACCTTCTGACCTTTCCTCAGGAGGACTCAATGGATTCGGGTAAAAGGCGCAGCCAGCGCGATTACACGCTAGCCTT
TAAATTATCGGTCGTAGATCAGGTTGAAAAAGGCGAGTTGAGTTATAAAGAAGCCCAACGACGCTATGGCATCCAAGGCCGGTCGACGGTGCTGGTCTGG
TTACGAAAGCACGGTCGACAGGATTGGAGCCAAGGCGCATCAATTCGAGAGCAGAGGAGCAGGTCCATGACCGAGCCAACCCTCCCGCCGACACCCGAGC
AGCGGATTAAAGAGCTTGAAGAACAGCTGGAGCTGAGCAATCAGAAGGCTCAGTTCTTTGAAGCCGTCGTCAACGTTCTGAAAAATGACTACGGCGTTTC
TGTCGTAAAAAAGCCACCCGGCAAGTCCTCTCGCAAGGGCAAATCCAAGACCTGAGCATTACCAGGGCTTGCCTGTTCATGGGTATTTCGCGCCAAGCGT
ATTACAAGCGTAATCGCGCTTTTGACGCGAGAGTCTGCCAAGACCAAGAGGTGGTGGACTTCGTCCTGGAAAAGCGGCGTCGCCAGCCCAAGTTGGGAAC
GCGCAAGCTGCACTACTTGATGAGCGTCGAAGCTCCTGCGTCGTTGTGCGTGGGTAGAGATCGTATGTTTACTATCCTTCGTGGTGCGCGCGAGCTGGTT
CCGCGTAAACGGGCTTATCACAAGACCACTCATAGCCATCATCGCTTCCGTCGCCACCCCAACCTGCTCAAAGCAGGTCCAGAACAAGTCGTGGCCAATG
GACCCGAACAGGTCTGGGTTGCAGACATAACCTATCTGCCTACGCAGGAAAGCGTGGCCTACGTGAGCCTTGTGACAGATGCGTACTCACGTAAGATCGT
TGGCCATCACGTGCATGAGAGCCTGCATGCCCAATCGGTGATGAAGGCACTGGAAAAAGCGGTAGGAGAGCGAAAAACCGATCAGATGCTGATTCATCAT
TCAGATCGCGGCGCCCAGTACTGCTCCGATCTCTATCAGCAGCTGCATACCAGGCATGGAATCCGGTGCTCGATGACTGATGGCTATGACTGTTATCAGA
ACGCTATGGCCGAGCGAGTAAACGGGATTTTGAAGACCGAGTTTCTACTCCATCGGCCTAAAGACTTGGCAGATGCAGTGAAAATGGTTGACGAATCGGT
GCAGATCTACAATGGGGAGCGGCCACACTTATCCCTGAAATACAAAACGCCAGATGCGGTGCATCGGGCGTTTTGAGCGTGAAACAGGTGTAAACCTATT
TCAGGACTAGACA
TAAATTATCGGTCGTAGATCAGGTTGAAAAAGGCGAGTTGAGTTATAAAGAAGCCCAACGACGCTATGGCATCCAAGGCCGGTCGACGGTGCTGGTCTGG
TTACGAAAGCACGGTCGACAGGATTGGAGCCAAGGCGCATCAATTCGAGAGCAGAGGAGCAGGTCCATGACCGAGCCAACCCTCCCGCCGACACCCGAGC
AGCGGATTAAAGAGCTTGAAGAACAGCTGGAGCTGAGCAATCAGAAGGCTCAGTTCTTTGAAGCCGTCGTCAACGTTCTGAAAAATGACTACGGCGTTTC
TGTCGTAAAAAAGCCACCCGGCAAGTCCTCTCGCAAGGGCAAATCCAAGACCTGAGCATTACCAGGGCTTGCCTGTTCATGGGTATTTCGCGCCAAGCGT
ATTACAAGCGTAATCGCGCTTTTGACGCGAGAGTCTGCCAAGACCAAGAGGTGGTGGACTTCGTCCTGGAAAAGCGGCGTCGCCAGCCCAAGTTGGGAAC
GCGCAAGCTGCACTACTTGATGAGCGTCGAAGCTCCTGCGTCGTTGTGCGTGGGTAGAGATCGTATGTTTACTATCCTTCGTGGTGCGCGCGAGCTGGTT
CCGCGTAAACGGGCTTATCACAAGACCACTCATAGCCATCATCGCTTCCGTCGCCACCCCAACCTGCTCAAAGCAGGTCCAGAACAAGTCGTGGCCAATG
GACCCGAACAGGTCTGGGTTGCAGACATAACCTATCTGCCTACGCAGGAAAGCGTGGCCTACGTGAGCCTTGTGACAGATGCGTACTCACGTAAGATCGT
TGGCCATCACGTGCATGAGAGCCTGCATGCCCAATCGGTGATGAAGGCACTGGAAAAAGCGGTAGGAGAGCGAAAAACCGATCAGATGCTGATTCATCAT
TCAGATCGCGGCGCCCAGTACTGCTCCGATCTCTATCAGCAGCTGCATACCAGGCATGGAATCCGGTGCTCGATGACTGATGGCTATGACTGTTATCAGA
ACGCTATGGCCGAGCGAGTAAACGGGATTTTGAAGACCGAGTTTCTACTCCATCGGCCTAAAGACTTGGCAGATGCAGTGAAAATGGTTGACGAATCGGT
GCAGATCTACAATGGGGAGCGGCCACACTTATCCCTGAAATACAAAACGCCAGATGCGGTGCATCGGGCGTTTTGAGCGTGAAACAGGTGTAAACCTATT
TCAGGACTAGACA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
402 bp | 133 aa | 54 | 455 | + | No |
Description : First part of the transposase
ORF sequence :
MDSGKRRSQRDYTLAFKLSVVDQVEKGELSYKEAQRRYGIQGRSTVLVWLRKHGRQDWSQGASIREQRSRSMTEPTLPPTPEQRIKELEEQLELSNQKAQ
FFEAVVNVLKNDYGVSVVKKPPGKSSRKGKSKT
FFEAVVNVLKNDYGVSVVKKPPGKSSRKGKSKT
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
868 bp | 288 aa | 409 | 1276 | + | No |
Description : Second part of the transposase
ORF sequence :
KSHPASPLARANPRPEHYQGLPVHGISRQAYYKRNRAFDARVCQDQEVVDFVLEKRRRQPKLGTRKLHYLMSVEAPASLCVGRDRMFTILRGARELVPRK
RAYHKTTHSHHRFRRHPNLLKAGPEQVVANGPEQVWVADITYLPTQESVAYVSLVTDAYSRKIVGHHVHESLHAQSVMKALEKAVGERKTDQMLIHHSDR
GAQYCSDLYQQLHTRHGIRCSMTDGYDCYQNAMAERVNGILKTEFLLHRPKDLADAVKMVDESVQIYNGERPHLSLKYKTPDAVHRAF
RAYHKTTHSHHRFRRHPNLLKAGPEQVVANGPEQVWVADITYLPTQESVAYVSLVTDAYSRKIVGHHVHESLHAQSVMKALEKAVGERKTDQMLIHHSDR
GAQYCSDLYQQLHTRHGIRCSMTDGYDCYQNAMAERVNGILKTEFLLHRPKDLADAVKMVDESVQIYNGERPHLSLKYKTPDAVHRAF
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1223 bp | 406 aa | 54 | 1276 | + | Yes |
Chemistry : DDE
ORF sequence :
DSGKRRSQRDYTLAFKLSVVDQVEKGELSYKEAQRRYGIQGRSTVLVWLRKHGRQDWSQGASIREQRSRSMTEPTLPPTPEQRIKELEEQLELSNQKAQF
FEAVVNVLKNDYGVSVVKKSHPASPLARANPRPEHYQGLPVHGISRQAYYKRNRAFDARVCQDQEVVDFVLEKRRRQPKLGTRKLHYLMSVEAPASLCVG
RDRMFTILRGARELVPRKRAYHKTTHSHHRFRRHPNLLKAGPEQVVANGPEQVWVADITYLPTQESVAYVSLVTDAYSRKIVGHHVHESLHAQSVMKALE
KAVGERKTDQMLIHHSDRGAQYCSDLYQQLHTRHGIRCSMTDGYDCYQNAMAERVNGILKTEFLLHRPKDLADAVKMVDESVQIYNGERPHLSLKYKTPD
AVHRAF
FEAVVNVLKNDYGVSVVKKSHPASPLARANPRPEHYQGLPVHGISRQAYYKRNRAFDARVCQDQEVVDFVLEKRRRQPKLGTRKLHYLMSVEAPASLCVG
RDRMFTILRGARELVPRKRAYHKTTHSHHRFRRHPNLLKAGPEQVVANGPEQVWVADITYLPTQESVAYVSLVTDAYSRKIVGHHVHESLHAQSVMKALE
KAVGERKTDQMLIHHSDRGAQYCSDLYQQLHTRHGIRCSMTDGYDCYQNAMAERVNGILKTEFLLHRPKDLADAVKMVDESVQIYNGERPHLSLKYKTPD
AVHRAF
Blast result :
Comments
There are 3 copies of ISPsy11 in the chromosome of this strain.
References
1] Buell,C.R., Joardar,V., Lindeberg,M., Selengut,J., Paulsen,I.T., Gwinn,M.L., Dodson,R.J., Deboy,R.T., Durkin,A.S., Kolonay,J.F., Madupu,R., Daugherty,S., Brinkac,L., Beanan,M.J., Haft,D.H., Nelson,W.C., Davidsen,T., Zafar,N., Zhou,L., Liu,J., Yuan,Q., Khouri,H., Fedorova,N., Tran,B., Russell,D., Berry,K., Utterback,T., Van Aken,S.E., Feldblyum,T.V., D'Ascenzo,M., Deng,W.L., Ramos,A.R., Alfano,J.R., Cartinhour,S., Chatterjee,A.K., Delaney,T.P., Lazarowitz,S.G., Martin,G.B., Schneider,D.J., Tang,X., Bender,C.L., White,O., Fraser,C.M. and Collmer,A. (2003) Proc. Natl. Acad. Sci. U.S.A. 100 (18), 10181-10186