ISPsy8
- Family IS3
- Group IS150
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AE016853 | ND | Pseudomonas syringae | Pseudomonas syringae DC3000 |
DNA section
IS Length : 1432 bp
Ends
IR Length : 23/25
IRL : TGGACTGCCCCCAAGAAGTTGGACACCAATCCGACCTAATGGGGGTGTTC
IRR : TGGACTGCCCCCCGGAAGTTGGACAGTTTTAGCTTGCCGCCTGAGTCCTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCTCACGCTC | CAG | CGTAGGAATG | 3 |
TCCTCACGCT | CTG | CGTGGGAATG | 3 |
TGTGCCCCGT | AAA | TGTGGGAGTG | 3 |
AAAGCTTGGC | TTT | TGTGGGAGTG | 3 |
CATTCCCACG | CGG | GGGGCGTAGG | 3 |
DNA sequence
TGGACTGCCCCCAAGAAGTTGGACACCAATCCGACCTAATGGGGGTGTTCAAATGGCCAAGTATTCAGAGCAATTCAAGCTCACCGTCGTCAAAGCCTAT
CTTGCAGGCAACATAGGCTTTCGCAAGGTGTCCAGCCAGTTCTCGATCGATTCCAGCCTGCTTCGACGCTGGGTCGCCAATTACAAGAGCCATGGGCACA
CAGGCCATCGTAAGCCTGGTCTTCGGTACAGCGAAGCCTTCAAACGCTCAGTGCTGGAGCACAAGCGCGAGCACGGGCTGTCCCTTCGCCAGACCGCAGC
GCATTTTGGTATTGGTGATCCTGGCCAAATAGTCATTTGGGAACAGCAGCATTACAGTAACGATCTAGCCCCCTACGTTCCCAAGAGAAGAAAGTCTGTT
GCCATGCCCAAGAAGCCTTATCCCACCGCACCAGTAATCGACGACGATACGCAGAAGACGCGTGACCAGTTAATGGCCGAGCTCGAATACCTGCGCATGG
AGAACGCTTACCTAAAAAAGTTGGAAGAGTTGAAGGAGCAGCAACGACGGCAAAAGAAAAAGCCCTGATCGTCAAACAACTGAGGAGCCGCTTCTCGCTC
TGCGCCCTTCTGACGCTGGCGGGCTTGGCGCGCAGTACGTTCTACTATCAGGTTCAGGTGCAATCCAGACCCGATCCAGATGCTGCTCTAAAGCAGGAGG
TAGAGCGGATTTATCACGAGGAGAGAGGTCTTTATGGGGCTCGGCGCATCACAGCGGTTATCCGCAACTCAGGCACGCTGGTCAACAAGAAGGTTGTGGA
GAGATTGATGGCTGAACTGGGTCTGCGCTCCGTTGTTCGACCAAAAAAATACCGTTCCTATAAGGGCACCGTCGGAAAAATTGCACCGAATTTGCTGGAG
CGCAATTTCACGGCGCAACGCCCGAACCAGAAATGGGTGACCGATGTGACCGAGTTTAAAGTGGCCAATCGAAAGCTGTATCTCTCGCCTGTGATGGACC
TGTACAACGGTGAGATCGTGGCGTACGAATTGTCTACCAGGCCGTGCTTTGAGCTGGTCACCAGTATGCTGGACAAGGCGTTGCAGCAGTTGCAAGACGA
GCCGAAGCTTGTGATGCACTCGGATCAAGGCTGGCAGTATCAACACGCGCAGTACCGTCAGAAACTGGCGGCAAAGGGTGTGAAGCAAAGCATGTCTCGT
AAGGGAAATTGCCTGGACAACGCTGCGATGGAAAGCTTTTTTGGTACGCTTAAGTCCGAGTTTTTCTACTTGAAACGATTTGAAAGCATAGAAGAGCTGA
CGGCAGGTCTGGAGGAGTACATCCGCTACTACAACCATGACCGCATTAAGCTGAAGCTAGGCGGCCTGAGCCCCGTAAAATACAGGACTCAGGCGGCAAG
CTAAAACTGTCCAACTTCCGGGGGGCAGTCCA
CTTGCAGGCAACATAGGCTTTCGCAAGGTGTCCAGCCAGTTCTCGATCGATTCCAGCCTGCTTCGACGCTGGGTCGCCAATTACAAGAGCCATGGGCACA
CAGGCCATCGTAAGCCTGGTCTTCGGTACAGCGAAGCCTTCAAACGCTCAGTGCTGGAGCACAAGCGCGAGCACGGGCTGTCCCTTCGCCAGACCGCAGC
GCATTTTGGTATTGGTGATCCTGGCCAAATAGTCATTTGGGAACAGCAGCATTACAGTAACGATCTAGCCCCCTACGTTCCCAAGAGAAGAAAGTCTGTT
GCCATGCCCAAGAAGCCTTATCCCACCGCACCAGTAATCGACGACGATACGCAGAAGACGCGTGACCAGTTAATGGCCGAGCTCGAATACCTGCGCATGG
AGAACGCTTACCTAAAAAAGTTGGAAGAGTTGAAGGAGCAGCAACGACGGCAAAAGAAAAAGCCCTGATCGTCAAACAACTGAGGAGCCGCTTCTCGCTC
TGCGCCCTTCTGACGCTGGCGGGCTTGGCGCGCAGTACGTTCTACTATCAGGTTCAGGTGCAATCCAGACCCGATCCAGATGCTGCTCTAAAGCAGGAGG
TAGAGCGGATTTATCACGAGGAGAGAGGTCTTTATGGGGCTCGGCGCATCACAGCGGTTATCCGCAACTCAGGCACGCTGGTCAACAAGAAGGTTGTGGA
GAGATTGATGGCTGAACTGGGTCTGCGCTCCGTTGTTCGACCAAAAAAATACCGTTCCTATAAGGGCACCGTCGGAAAAATTGCACCGAATTTGCTGGAG
CGCAATTTCACGGCGCAACGCCCGAACCAGAAATGGGTGACCGATGTGACCGAGTTTAAAGTGGCCAATCGAAAGCTGTATCTCTCGCCTGTGATGGACC
TGTACAACGGTGAGATCGTGGCGTACGAATTGTCTACCAGGCCGTGCTTTGAGCTGGTCACCAGTATGCTGGACAAGGCGTTGCAGCAGTTGCAAGACGA
GCCGAAGCTTGTGATGCACTCGGATCAAGGCTGGCAGTATCAACACGCGCAGTACCGTCAGAAACTGGCGGCAAAGGGTGTGAAGCAAAGCATGTCTCGT
AAGGGAAATTGCCTGGACAACGCTGCGATGGAAAGCTTTTTTGGTACGCTTAAGTCCGAGTTTTTCTACTTGAAACGATTTGAAAGCATAGAAGAGCTGA
CGGCAGGTCTGGAGGAGTACATCCGCTACTACAACCATGACCGCATTAAGCTGAAGCTAGGCGGCCTGAGCCCCGTAAAATACAGGACTCAGGCGGCAAG
CTAAAACTGTCCAACTTCCGGGGGGCAGTCCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
516 bp | 171 aa | 53 | 568 | + | No |
Description : First part of the transposase
ORF sequence :
MAKYSEQFKLTVVKAYLAGNIGFRKVSSQFSIDSSLLRRWVANYKSHGHTGHRKPGLRYSEAFKRSVLEHKREHGLSLRQTAAHFGIGDPGQIVIWEQQH
YSNDLAPYVPKRRKSVAMPKKPYPTAPVIDDDTQKTRDQLMAELEYLRMENAYLKKLEELKEQQRRQKKKP
YSNDLAPYVPKRRKSVAMPKKPYPTAPVIDDDTQKTRDQLMAELEYLRMENAYLKKLEELKEQQRRQKKKP
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
939 bp | 312 aa | 466 | 1404 | + | No |
Description : Second part of the transposase
ORF sequence :
PVNGRARIPAHGERLPKKVGRVEGAATTAKEKALIVKQLRSRFSLCALLTLAGLARSTFYYQVQVQSRPDPDAALKQEVERIYHEERGLYGARRITAVIR
NSGTLVNKKVVERLMAELGLRSVVRPKKYRSYKGTVGKIAPNLLERNFTAQRPNQKWVTDVTEFKVANRKLYLSPVMDLYNGEIVAYELSTRPCFELVTS
MLDKALQQLQDEPKLVMHSDQGWQYQHAQYRQKLAAKGVKQSMSRKGNCLDNAAMESFFGTLKSEFFYLKRFESIEELTAGLEEYIRYYNHDRIKLKLGG
LSPVKYRTQAAS
NSGTLVNKKVVERLMAELGLRSVVRPKKYRSYKGTVGKIAPNLLERNFTAQRPNQKWVTDVTEFKVANRKLYLSPVMDLYNGEIVAYELSTRPCFELVTS
MLDKALQQLQDEPKLVMHSDQGWQYQHAQYRQKLAAKGVKQSMSRKGNCLDNAAMESFFGTLKSEFFYLKRFESIEELTAGLEEYIRYYNHDRIKLKLGG
LSPVKYRTQAAS
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1352 bp | 450 aa | 53 | 1404 | + | Yes |
Chemistry : DDE
ORF sequence :
MAKYSEQFKLTVVKAYLAGNIGFRKVSSQFSIDSSLLRRWVANYKSHGHTGHRKPGLRYSEAFKRSVLEHKREHGLSLRQTAAHFGIGDPGQIVIWEQQH
YSNDLAPYVPKRRKSVAMPKKPYPTAPVIDDDTQKTRDQLMAELEYLRMENAYLKKVGRVEGAATTAKEKALIVKQLRSRFSLCALLTLAGLARSTFYYQ
VQVQSRPDPDAALKQEVERIYHEERGLYGARRITAVIRNSGTLVNKKVVERLMAELGLRSVVRPKKYRSYKGTVGKIAPNLLERNFTAQRPNQKWVTDVT
EFKVANRKLYLSPVMDLYNGEIVAYELSTRPCFELVTSMLDKALQQLQDEPKLVMHSDQGWQYQHAQYRQKLAAKGVKQSMSRKGNCLDNAAMESFFGTL
KSEFFYLKRFESIEELTAGLEEYIRYYNHDRIKLKLGGLSPVKYRTQAAS
YSNDLAPYVPKRRKSVAMPKKPYPTAPVIDDDTQKTRDQLMAELEYLRMENAYLKKVGRVEGAATTAKEKALIVKQLRSRFSLCALLTLAGLARSTFYYQ
VQVQSRPDPDAALKQEVERIYHEERGLYGARRITAVIRNSGTLVNKKVVERLMAELGLRSVVRPKKYRSYKGTVGKIAPNLLERNFTAQRPNQKWVTDVT
EFKVANRKLYLSPVMDLYNGEIVAYELSTRPCFELVTSMLDKALQQLQDEPKLVMHSDQGWQYQHAQYRQKLAAKGVKQSMSRKGNCLDNAAMESFFGTL
KSEFFYLKRFESIEELTAGLEEYIRYYNHDRIKLKLGGLSPVKYRTQAAS
Blast result :
Comments
There are 5 copies of ISPsy8 in the chromosome of this strain.
References