ISPsy5
- Family IS66
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AE016853 | ND | Pseudomonas syringae | Pseudomonas syringae DC3000 |
DNA section
IS Length : 2059 bp
Ends
IR Length : 21/28
IRL : GTATCCGATCCACGAACCCCACATTTCAAGCCACTGGCTGACGCCTGATG
IRR : GTAAGCGATCCACCAACCACACCTACCATCAGATGCGGCTTCCGTTTATC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CATGCGGTCT | GTTTTAAT | GAATCCGCAA | 8 |
ACGGTTCAGG | AATTGAAT | TGGCTGCTGG | 8 |
CTGAATCGGC | GTAGTCTC | GCCCTTTACC | 8 |
CCTTGATGCG | GTTGGAAC | GACCCCAGCC | 8 |
GCAAATGTCT | GAAGATTC | TGCATGATAT | 8 |
CGGCAAACCC | GATACGCT | TGAAAATGAC | 8 |
GACTAAGGCA | GTTGCTTC | TGCCATGGCA | 8 |
GAACTTTGTG | ATCGTGCC | ACAGGCTGAC | 8 |
GGGAAGTAGT | GATAGAAC | GACCCTTTGG | 8 |
TCGACACCCT | GATTCATC | ACTCCCGGCG | 8 |
TCCGAACTCG | AATATACC | GGCAAGAAAA | 8 |
GATGGTGAGT | GTCCATTA | CATCACGACA | 8 |
GGGAGACACC | AAAACAAC | ACGCCTACGG | 8 |
TTAGCCTATT | TTTCTTTT | TTAGGTTTTG | 8 |
CTTACGCCTC | ACTCAACC | CACGCCAGAA | 8 |
GACCAGTACA | AATATTGC | GCAGTGCTGG | 8 |
TAGCGGATCT | GGTGCTTC | AGATCGAAGA | 8 |
CACCGGGGCT | GACTCACG | ACCGTGCTCA | 8 |
TCAGGCGGTG | CATTCACC | AACGCCAAAT | 8 |
ACGATAGTTG | AGATTATC | GTTCCTCAGC | 8 |
ACCCGCAGCT | GGACCAAA | GTCAAGTCGG | 8 |
AGCTTTGTCC | GTTTCTCC | GAGCGAGAGG | 8 |
GGGAACTGTC | AATTAATT | AGTCAGGATT | 8 |
CTATTTATCT | GGTTATAG | CGCGAGGACT | 8 |
GGATGGATTT | GATC | AAGCTGCTGC | 4 |
AGTAACCATC | AGTTATCCAC | 0 | |
CAGATCAAGC | GTTAAAGAGC | 0 | |
GGCATCGAAC | ATTTCAGCGC | 0 | |
GTGCTCTTCG | TTTCTAGTAG | 0 | |
CATATTCAAT | GACACAAATA | 0 | |
CTTTCCATTT | GTTCTTCCGG | 0 | |
CTGGAGCGCC | AAAAGCTCAC | 0 | |
CCAATTCAAT | CGGGAATTGC | 0 |
DNA sequence
GTATCCGATCCACGAACCCCACATTTCAAGCCACTGGCTGACGCCTGATGCTGTGCTCCCGTTTTCTTTCAGGAGCCAGCACCATGATGCGACCCGACGC
CAAAGTCGAGAAAGTCTACCTCTATCCCAAACCCGTGGATTTCAGAAAATCCATCGATGGCTTAGCTGCTTTGGTCGAGTTGGATATTAAAGTGGCGGTC
TTTGATCCGGTGCTCTTTGTCTTTCTCAACAAATCCCGGAATCGAGTGAAGATTTTGTATTGGGAGCGTAACGGCTTCTGCCTTTGGCTCAAGCGTCTCG
AGTCCGAGCGTTTCAAAATCTCGCCAGATGATGTCGACGAAGCCATTGTGCTGACGGTTCAGGAATTGAATTGGCTGCTGGATGGATTTGATCTGTGGCG
CAACCGTCCTCATAAGATTTTGACTCCAAGGTTTGTTGCCTGACGGGTATAATCCAGGGCATGCGACCATTGCCCGACAACCTTCCTGACGATCCCGTAT
TGCTCAAACAGATGCTGCTTGAGAGCTACGAAGCACGCTCGCGCGAACAGGAAGTTAAAGACGCCTACGCCACTCACATCGTTGATCTCAAAGAGCAGAT
CAAGCTGCTGCGTGACCGTATTTTTGGTCGAAAGTCCGAACAAACCGTCGAGCCTAATACCCCTCAACTTGCCTTGTTCAATGAACCTGAAAGCGAGCCT
ATGCTCCCGGTCGGCGATGCTGATGAGGAAGTAGTTGCTCCTGCGCCACGCCGTGGCAAGCGCAAGCCACTGTCGGCTGATCTGCCGCGCATTGAAGTCA
TCCACGAGCTGCCCGAACACGAACTGACCTGTGCCTGCGGTTGCCGCAAGCATGTCGTCAGCGAGGAAACCAGCGAGCAACTGGATATCGTGCCGATGCA
GATTCGGGTGATCAAACACATCCGCAAAGTCTACGGCTGTCGTGGCTGTGAGTCGGCACCGGTCACAGCCGGCAAGCCTGCGCAGTTGATTGAAAAGAGC
ATGGCCAGCCCCAGCGTGTTGGCCATGCTGCTGACCACCAAGTATGTCGACGGCTTGCCGCTGCATCGTTTTGAAACGGTGCTAAGCCGACATGGCATAG
AAATCCCGCGTCAAACGTTGGCCCGCTGGATTATCCAGTGCGGCGAACATTTGCAGCCGCTGTTAAATCTGATGCGTGATCGATTGCTGGAAAGCCCGGT
CATCCACTGTGACGAAACCCGCGTTCAGGTACTGAAAGAACCAGATCGAGACCCGACCAGCCAATCCTGGATGTGGGTACAGGCCAGCGGGCCTCCAGAT
CATAAAGTCGTATTGTTCGACTACACTTCCAGCCGCGCGCAGGACGTACCGTTACGGCTGCTGGAAAGTTATCGCGGCTATGTGATGACTGATGATTACG
CGGGCTATAACGCGCTGGCGTTACAACCGGGCGTGGAGCGCTTGGCGTGTATGGCCCATGCGCGGCGCAAATTTGTCGAAGCACAAAAAGTGCAACCTAA
GGGCAAGACCGGGCGTGCCGATATCGCGCTGACGATGATCAATAAGCTGTACGGTATCGAGCGCGAATTGAAAGACGGCAGCGACGAACAGCGCTTTACC
GGTCGGCAGGAGAAAAGCCTGCCAATCTTGGCTCAGTTGAAAAGCTGGCTGGATAAAACTCAGTCCCACGTGACGCCGCAAAGCGTGCTGGGCAAGGCAG
TTGGTTATCTGGCGAATAACTGGAGTCGGCTGAAGCGTTACGTGGAAGCCGGCTTTTTACCGATCGACAACAACCCGGCAGAGCGCGCAATAAAGCCGTT
TGTTATTGGGCGCAAAGCCTGGCTGTTCAGCGACACGCCTAAAGGCGCCACCGCCAGTGCACAGATCTATAGCTTGGTCGAGACCGCCAAGGTCAACGGC
CAGGAGCCCTATACGTGGCTGCGCCACGTACTGGAGAGGTTGCCACTTGCGCAGTCGGTGGCCGACTATGAGGCGTTGCTGCCGTGGAACTGCTCACCGG
AAATGCCAAGATAAACGGAAGCCGCATCTGATGGTAGGTGTGGTTGGTGGATCGCTTAC
CAAAGTCGAGAAAGTCTACCTCTATCCCAAACCCGTGGATTTCAGAAAATCCATCGATGGCTTAGCTGCTTTGGTCGAGTTGGATATTAAAGTGGCGGTC
TTTGATCCGGTGCTCTTTGTCTTTCTCAACAAATCCCGGAATCGAGTGAAGATTTTGTATTGGGAGCGTAACGGCTTCTGCCTTTGGCTCAAGCGTCTCG
AGTCCGAGCGTTTCAAAATCTCGCCAGATGATGTCGACGAAGCCATTGTGCTGACGGTTCAGGAATTGAATTGGCTGCTGGATGGATTTGATCTGTGGCG
CAACCGTCCTCATAAGATTTTGACTCCAAGGTTTGTTGCCTGACGGGTATAATCCAGGGCATGCGACCATTGCCCGACAACCTTCCTGACGATCCCGTAT
TGCTCAAACAGATGCTGCTTGAGAGCTACGAAGCACGCTCGCGCGAACAGGAAGTTAAAGACGCCTACGCCACTCACATCGTTGATCTCAAAGAGCAGAT
CAAGCTGCTGCGTGACCGTATTTTTGGTCGAAAGTCCGAACAAACCGTCGAGCCTAATACCCCTCAACTTGCCTTGTTCAATGAACCTGAAAGCGAGCCT
ATGCTCCCGGTCGGCGATGCTGATGAGGAAGTAGTTGCTCCTGCGCCACGCCGTGGCAAGCGCAAGCCACTGTCGGCTGATCTGCCGCGCATTGAAGTCA
TCCACGAGCTGCCCGAACACGAACTGACCTGTGCCTGCGGTTGCCGCAAGCATGTCGTCAGCGAGGAAACCAGCGAGCAACTGGATATCGTGCCGATGCA
GATTCGGGTGATCAAACACATCCGCAAAGTCTACGGCTGTCGTGGCTGTGAGTCGGCACCGGTCACAGCCGGCAAGCCTGCGCAGTTGATTGAAAAGAGC
ATGGCCAGCCCCAGCGTGTTGGCCATGCTGCTGACCACCAAGTATGTCGACGGCTTGCCGCTGCATCGTTTTGAAACGGTGCTAAGCCGACATGGCATAG
AAATCCCGCGTCAAACGTTGGCCCGCTGGATTATCCAGTGCGGCGAACATTTGCAGCCGCTGTTAAATCTGATGCGTGATCGATTGCTGGAAAGCCCGGT
CATCCACTGTGACGAAACCCGCGTTCAGGTACTGAAAGAACCAGATCGAGACCCGACCAGCCAATCCTGGATGTGGGTACAGGCCAGCGGGCCTCCAGAT
CATAAAGTCGTATTGTTCGACTACACTTCCAGCCGCGCGCAGGACGTACCGTTACGGCTGCTGGAAAGTTATCGCGGCTATGTGATGACTGATGATTACG
CGGGCTATAACGCGCTGGCGTTACAACCGGGCGTGGAGCGCTTGGCGTGTATGGCCCATGCGCGGCGCAAATTTGTCGAAGCACAAAAAGTGCAACCTAA
GGGCAAGACCGGGCGTGCCGATATCGCGCTGACGATGATCAATAAGCTGTACGGTATCGAGCGCGAATTGAAAGACGGCAGCGACGAACAGCGCTTTACC
GGTCGGCAGGAGAAAAGCCTGCCAATCTTGGCTCAGTTGAAAAGCTGGCTGGATAAAACTCAGTCCCACGTGACGCCGCAAAGCGTGCTGGGCAAGGCAG
TTGGTTATCTGGCGAATAACTGGAGTCGGCTGAAGCGTTACGTGGAAGCCGGCTTTTTACCGATCGACAACAACCCGGCAGAGCGCGCAATAAAGCCGTT
TGTTATTGGGCGCAAAGCCTGGCTGTTCAGCGACACGCCTAAAGGCGCCACCGCCAGTGCACAGATCTATAGCTTGGTCGAGACCGCCAAGGTCAACGGC
CAGGAGCCCTATACGTGGCTGCGCCACGTACTGGAGAGGTTGCCACTTGCGCAGTCGGTGGCCGACTATGAGGCGTTGCTGCCGTGGAACTGCTCACCGG
AAATGCCAAGATAAACGGAAGCCGCATCTGATGGTAGGTGTGGTTGGTGGATCGCTTAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
360 bp | 119 aa | 84 | 443 | + | No |
AG : IS66 TnpB
ORF sequence :
MMRPDAKVEKVYLYPKPVDFRKSIDGLAALVELDIKVAVFDPVLFVFLNKSRNRVKILYWERNGFCLWLKRLESERFKISPDDVDEAIVLTVQELNWLLD
GFDLWRNRPHKILTPRFVA
GFDLWRNRPHKILTPRFVA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1554 bp | 517 aa | 461 | 2014 | + | No |
Chemistry : DDE
ORF sequence :
MRPLPDNLPDDPVLLKQMLLESYEARSREQEVKDAYATHIVDLKEQIKLLRDRIFGRKSEQTVEPNTPQLALFNEPESEPMLPVGDADEEVVAPAPRRGK
RKPLSADLPRIEVIHELPEHELTCACGCRKHVVSEETSEQLDIVPMQIRVIKHIRKVYGCRGCESAPVTAGKPAQLIEKSMASPSVLAMLLTTKYVDGLP
LHRFETVLSRHGIEIPRQTLARWIIQCGEHLQPLLNLMRDRLLESPVIHCDETRVQVLKEPDRDPTSQSWMWVQASGPPDHKVVLFDYTSSRAQDVPLRL
LESYRGYVMTDDYAGYNALALQPGVERLACMAHARRKFVEAQKVQPKGKTGRADIALTMINKLYGIERELKDGSDEQRFTGRQEKSLPILAQLKSWLDKT
QSHVTPQSVLGKAVGYLANNWSRLKRYVEAGFLPIDNNPAERAIKPFVIGRKAWLFSDTPKGATASAQIYSLVETAKVNGQEPYTWLRHVLERLPLAQSV
ADYEALLPWNCSPEMPR
RKPLSADLPRIEVIHELPEHELTCACGCRKHVVSEETSEQLDIVPMQIRVIKHIRKVYGCRGCESAPVTAGKPAQLIEKSMASPSVLAMLLTTKYVDGLP
LHRFETVLSRHGIEIPRQTLARWIIQCGEHLQPLLNLMRDRLLESPVIHCDETRVQVLKEPDRDPTSQSWMWVQASGPPDHKVVLFDYTSSRAQDVPLRL
LESYRGYVMTDDYAGYNALALQPGVERLACMAHARRKFVEAQKVQPKGKTGRADIALTMINKLYGIERELKDGSDEQRFTGRQEKSLPILAQLKSWLDKT
QSHVTPQSVLGKAVGYLANNWSRLKRYVEAGFLPIDNNPAERAIKPFVIGRKAWLFSDTPKGATASAQIYSLVETAKVNGQEPYTWLRHVLERLPLAQSV
ADYEALLPWNCSPEMPR
Blast result :
Comments
There are 33 intact copies and 13 incomplete copies of ISPsy5 in the chromosome of this strain, and 25 of these have direct repeats outside the insertion sequence. There are no copies in the two plasmids.
References
1] Buell,C.R., Joardar,V., Lindeberg,M., Selengut,J., Paulsen,I.T.,Gwinn,M.L., Dodson,R.J., Deboy,R.T., Durkin,A.S., Kolonay,J.F., Madupu,R., Daugherty,S., Brinkac,L., Beanan,M.J., Haft,D.H., Nelson,W.C., Davidsen,T., Zafar,N., Zhou,L., Liu,J., Yuan,Q., Khouri,H., Fedorova,N., Tran,B., Russell,D., Berry,K.,Utterback,T., Van Aken,S.E., Feldblyum,T.V., D'Ascenzo,M., Deng,W.L., Ramos,A.R., Alfano,J.R., Cartinhour,S., Chatterjee,A.K., Delaney,T.P., Lazarowitz,S.G., Martin,G.B., Schneider,D.J., Tang,X., Bender,C.L., White,O., Fraser,C.M. and Collmer,A. (2003) PNAS, 100(18),10181-10186.