ISFlsp1
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AJ421424 | ND | Flavobacterium sp | Flavobacterium sp ATCC 27551 plasmid pPDL2 |
DNA section
IS Length : 2625 bp
Ends
IR Length : 13/16
IRL : AACGCCGGAGTAAAAACATACCACTGACGGGTCTTTCGGGGTCCGTTCAT
IRR : TAATGCCGGGGTAAAATTGTGCAAGATTCCGGTGTAAGAGTGTACCTAGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
AACGCCGGAGTAAAAACATACCACTGACGGGTCTTTCGGGGTCCGTTCATTTCGGAGTAAAAAGTGTACCGGTCCTGATGGGTCCTCTGGAGAGAGGGCC
GGAGGATGAAGTCAGTGGAGAATATATGCGAAGGTCCGTCGGGCCGTATTGGTTGAAGGGATGACGCGGCGAGAAGCAGCGCAGTTATTTTGGTGTTCAT
CGCAACACGATCACGAAGATGCTGCAGTATGCGGAGCCACCGGAGATATCGGCGAGCGGTGCCGCGGGTGTCGGAGAAGCTGGCACCGTTCGAGACGTTA
ATCGAACGAGATATTACGTTCGGACAAAGGTGCTCCTCCCAAGCAGCGCCATACGTGCAAGCGGAATATACGAACGGCTGCGGACTGAGCATGGGTATAC
GGGCGGTCTGACGATCCTGAGCGATTAATGTTCGTTCGCAGCGGTTGCGTTCCCGCGAGGTATTCATACCGCTGAGCCACAGGCCTGAGGCACGCTCAGG
TGGATTTTGGCGAAGCCGATGCTATCATCGCAGGCAAGCGGGTGCGGCATGCATTATTTCTGCATGGATTTGCCACAGTCCGATGGGTGTTTTGTGAAGG
CCTATCCCGACCGAAGTGGCGGAAGCGTTTTGCGATGGCCATGTCAGCGCCTTTGCCTTTTTCGGCGGTGATGCCTACGCGCATCCTGTACGATAACACC
CGGCTTGCGGTGGCGCGCATTCTTGGCGATGAGACGGCGCGAACGCAGCCGGATGTTTGCGGGCTTGCAGAGCCATTATCTGTTCGACGATCAGGTTCGG
TCGCCCCGGCAAGGGGAACGACAAGGGCAAGGTCGAGGGACTGGTCGGCTATGATGCGCCGCAACTTCATGGTGCCGATACCGGCGGCGGCGAGTATCGA
AGAACTGAACGCCCAGCTTTGCCGATCAATGCCGGCGTCGCGGTGCAGCGGTATTGCGGGGACAAAGCCAGAGCAATCACGGCGCGCATGGAAGCCGATA
GTGCCGCGTTCATGCCCTTGCCGGAGGTGGCGTTCGAATCCGTGCCATATCGACAGCGGCTGCGCGTCGTCGATGGCGCTGGTGCGCTATCGCACCAAAC
GATTACTCGGTACCCACGGCGTTCGCGCATCAGCAGGTCGTCATCAAGGGCTATGTCGAATCGTGTCGACATCGTCTGTCGGGGCACGTGCATCGCCAGC
CATGTGCGCAGGTATGAGCAGAGAGGATTTTATTGCCAACCCGCTCCACTATCTGGCCCTGCTCGAGCATAAGCCCGGCGACACTGGATCAGGCCGCGCC
GCTTGATGGCTGGCACCTGTCCGAACCGGTGCACCGCCTGCAGGCGGCTGATGGAAGCGAGAAGCGGCAAGGAAGGACGGCGTGCCTTCATCCAGGTCCT
GCAGGTTGTGCGAACATTATGAGCAGTCGCTGGTCGAGTGGGCGGTCGCCCGTGCGCTGGAGCATGGGCGCGATCAGCTTTGATGCGGTCAAGATGATCC
TGCTTGCGCGTCTGGAACACCGACACCGCGAGGCTGGATATGAGCCTGTATCCCTATCTGCCCCGCGCCAATGTCGGTGTGACCGAATACCCGCGCCTAT
CTGGGCCTGATACCCGATGCCCACCGCGTGACAATGAAGGGGGCATACAGCATGACAGACCCTGTGATGCAACCGCTGCCTGCCATAATGGAGACGGGCA
CCAGCGTAGCCGCCGCAGATCCTGCTGGGCAACCACTTGAAAGCGCTCAAGCTGCCGACCTTCGCTCGACGAGTATGAGAAGGTGGCGATGGAAGCGGCG
GGCAGCCGCACCGATTATCCCGGCTATCTAGCTGCGCCTGTGCGAGTTGGAACGGATCGACCGGGAGCGGCGCATGGTCGAACGCCGTATACCGGCTCGC
CAGGTTCCCGCACACCAAGAGCTTCGATACGTTCGATTTTGCCGCGCAGCCATTCGCTGAACAAGCCGCTGGTGGTTGAGCTTGCGCGATGCGAATGGAT
TACGACGCGCAGACAACATTATCGCCCTTGGGCCCTCCGGCACCGGCAAGACCCATGTCGCGCTCGCGCTCGGACCTGGCGGCCTGTCAGAAAGGACACA
GCGTCGCCTTCGTTACAGCCGCCGCCCTCGTGCAATGAGCTGATGGAGGCAAGAGACGAGCGCCGGTTGCGCCAGCTGCAAAAGCATCTCGCCTCAAGTC
AAGCTGCTGATCCTTGATGAACTGGGTTATGTCCCGTTCACCGCCGTCGGCAGTGAAACTGCTGTTCGAGGTGCTCAGCCAGCGCTACGAACGCGGCAGC
ACGCTCATCACCAGCAAATCTGCCGTTCGATGAATGGACATCGGTGTTCGGATCCGAGCGGCTTACCGGCGCCCTGCTACGACCGGTTGACCCACCATGT
CCATATCCTCGAGATGAACGGGGGCAGCTATCGGCTTGCACAGCAGCCGGAAACGGCAAAAGCACAGCCACCACGCACAGCAAGAGGAGGTGCCCCCCCC
AATGACCTGATCAGAAAACCCCTCATCTGCTGTGCTGAACGGCCTTCCGCTACGCTCCAGAACCGTTCAGCACAGCAGATGAAAGCACCGCCTCGACAAG
AGGCTTTTTGTTCAATCCAACTAGGTACACTCTTACACCGGAATCTTGCACAATTTTACCCCGGCATTA
GGAGGATGAAGTCAGTGGAGAATATATGCGAAGGTCCGTCGGGCCGTATTGGTTGAAGGGATGACGCGGCGAGAAGCAGCGCAGTTATTTTGGTGTTCAT
CGCAACACGATCACGAAGATGCTGCAGTATGCGGAGCCACCGGAGATATCGGCGAGCGGTGCCGCGGGTGTCGGAGAAGCTGGCACCGTTCGAGACGTTA
ATCGAACGAGATATTACGTTCGGACAAAGGTGCTCCTCCCAAGCAGCGCCATACGTGCAAGCGGAATATACGAACGGCTGCGGACTGAGCATGGGTATAC
GGGCGGTCTGACGATCCTGAGCGATTAATGTTCGTTCGCAGCGGTTGCGTTCCCGCGAGGTATTCATACCGCTGAGCCACAGGCCTGAGGCACGCTCAGG
TGGATTTTGGCGAAGCCGATGCTATCATCGCAGGCAAGCGGGTGCGGCATGCATTATTTCTGCATGGATTTGCCACAGTCCGATGGGTGTTTTGTGAAGG
CCTATCCCGACCGAAGTGGCGGAAGCGTTTTGCGATGGCCATGTCAGCGCCTTTGCCTTTTTCGGCGGTGATGCCTACGCGCATCCTGTACGATAACACC
CGGCTTGCGGTGGCGCGCATTCTTGGCGATGAGACGGCGCGAACGCAGCCGGATGTTTGCGGGCTTGCAGAGCCATTATCTGTTCGACGATCAGGTTCGG
TCGCCCCGGCAAGGGGAACGACAAGGGCAAGGTCGAGGGACTGGTCGGCTATGATGCGCCGCAACTTCATGGTGCCGATACCGGCGGCGGCGAGTATCGA
AGAACTGAACGCCCAGCTTTGCCGATCAATGCCGGCGTCGCGGTGCAGCGGTATTGCGGGGACAAAGCCAGAGCAATCACGGCGCGCATGGAAGCCGATA
GTGCCGCGTTCATGCCCTTGCCGGAGGTGGCGTTCGAATCCGTGCCATATCGACAGCGGCTGCGCGTCGTCGATGGCGCTGGTGCGCTATCGCACCAAAC
GATTACTCGGTACCCACGGCGTTCGCGCATCAGCAGGTCGTCATCAAGGGCTATGTCGAATCGTGTCGACATCGTCTGTCGGGGCACGTGCATCGCCAGC
CATGTGCGCAGGTATGAGCAGAGAGGATTTTATTGCCAACCCGCTCCACTATCTGGCCCTGCTCGAGCATAAGCCCGGCGACACTGGATCAGGCCGCGCC
GCTTGATGGCTGGCACCTGTCCGAACCGGTGCACCGCCTGCAGGCGGCTGATGGAAGCGAGAAGCGGCAAGGAAGGACGGCGTGCCTTCATCCAGGTCCT
GCAGGTTGTGCGAACATTATGAGCAGTCGCTGGTCGAGTGGGCGGTCGCCCGTGCGCTGGAGCATGGGCGCGATCAGCTTTGATGCGGTCAAGATGATCC
TGCTTGCGCGTCTGGAACACCGACACCGCGAGGCTGGATATGAGCCTGTATCCCTATCTGCCCCGCGCCAATGTCGGTGTGACCGAATACCCGCGCCTAT
CTGGGCCTGATACCCGATGCCCACCGCGTGACAATGAAGGGGGCATACAGCATGACAGACCCTGTGATGCAACCGCTGCCTGCCATAATGGAGACGGGCA
CCAGCGTAGCCGCCGCAGATCCTGCTGGGCAACCACTTGAAAGCGCTCAAGCTGCCGACCTTCGCTCGACGAGTATGAGAAGGTGGCGATGGAAGCGGCG
GGCAGCCGCACCGATTATCCCGGCTATCTAGCTGCGCCTGTGCGAGTTGGAACGGATCGACCGGGAGCGGCGCATGGTCGAACGCCGTATACCGGCTCGC
CAGGTTCCCGCACACCAAGAGCTTCGATACGTTCGATTTTGCCGCGCAGCCATTCGCTGAACAAGCCGCTGGTGGTTGAGCTTGCGCGATGCGAATGGAT
TACGACGCGCAGACAACATTATCGCCCTTGGGCCCTCCGGCACCGGCAAGACCCATGTCGCGCTCGCGCTCGGACCTGGCGGCCTGTCAGAAAGGACACA
GCGTCGCCTTCGTTACAGCCGCCGCCCTCGTGCAATGAGCTGATGGAGGCAAGAGACGAGCGCCGGTTGCGCCAGCTGCAAAAGCATCTCGCCTCAAGTC
AAGCTGCTGATCCTTGATGAACTGGGTTATGTCCCGTTCACCGCCGTCGGCAGTGAAACTGCTGTTCGAGGTGCTCAGCCAGCGCTACGAACGCGGCAGC
ACGCTCATCACCAGCAAATCTGCCGTTCGATGAATGGACATCGGTGTTCGGATCCGAGCGGCTTACCGGCGCCCTGCTACGACCGGTTGACCCACCATGT
CCATATCCTCGAGATGAACGGGGGCAGCTATCGGCTTGCACAGCAGCCGGAAACGGCAAAAGCACAGCCACCACGCACAGCAAGAGGAGGTGCCCCCCCC
AATGACCTGATCAGAAAACCCCTCATCTGCTGTGCTGAACGGCCTTCCGCTACGCTCCAGAACCGTTCAGCACAGCAGATGAAAGCACCGCCTCGACAAG
AGGCTTTTTGTTCAATCCAACTAGGTACACTCTTACACCGGAATCTTGCACAATTTTACCCCGGCATTA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1524 bp | 507 aa | 105 | 1628 | + | No |
Chemistry : DDE
ORF sequence :
MKSVEIYAKVRRAVLVEGMTRREAARYFGVHRNTITKMLQYAEPPGYRRAVPRVSEKLAPFETLIDEILRSDKGAPPKQRHTCKRIYERLRTEHGYTGGL
TILSDYVRSQRLRSREVFIPLSHRPGHAQVDFGEADAIIAGKRVRLHYFCMDLPQSDGCFVKAYPAEVAEAFCDGHVSAFAFFGGVPTRILYDNTRLAVA
RILGDGRRERSRMFAGLQSHYLFDDRFGRPGKGNDKGKVEGLVGYVRRNFMVPIPAAASIEELNARFADQCRRRGAAVLRGQSQSITARMEADSAAFMPL
PEVAFDPCHIDSGCASSMALVRYRTNDYSVPTAFAHQQVVIKGYVDRVDIVCRGTCIASHVRRYEREDFIANPLHYLALLEHKPGALDQAAPLDGWHLSE
PVHRLRRLMEARSGKEGRRAFIQVLRLCEHYEQSLVEWAVARALELGAISFDAVKMILLARLEHRPARLDMSLYPYLPRANVGVTDTRAYLGLIPDAHRV
TMKGASA
TILSDYVRSQRLRSREVFIPLSHRPGHAQVDFGEADAIIAGKRVRLHYFCMDLPQSDGCFVKAYPAEVAEAFCDGHVSAFAFFGGVPTRILYDNTRLAVA
RILGDGRRERSRMFAGLQSHYLFDDRFGRPGKGNDKGKVEGLVGYVRRNFMVPIPAAASIEELNARFADQCRRRGAAVLRGQSQSITARMEADSAAFMPL
PEVAFDPCHIDSGCASSMALVRYRTNDYSVPTAFAHQQVVIKGYVDRVDIVCRGTCIASHVRRYEREDFIANPLHYLALLEHKPGALDQAAPLDGWHLSE
PVHRLRRLMEARSGKEGRRAFIQVLRLCEHYEQSLVEWAVARALELGAISFDAVKMILLARLEHRPARLDMSLYPYLPRANVGVTDTRAYLGLIPDAHRV
TMKGASA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
840 bp | 279 aa | 1625 | 2464 | + | No |
AG : IS21 helper
ORF sequence :
MTDPVMQPLPAIMETGTSVPPQILLGNHLKALKLPTFAREYEKVAMEAAGSRTDYPGYLLRLCELERIDRERRMVERRIRLARFPHTKSFDTFDFAAQPS
LNKPLVVELARCEWITTRSNIIALGPSGTGKTHVALALGLAACQKGHSVAFVTAAALVHELMEARDERRLRQLQKHLASVKLLILDELGYVPFTAVGSEL
LFEVLSQRYERGSTLITSNLPFDEWTSVFGSERLTGALLDRLTHHVHILEMNGGSYRLASSRKRQKHSHHAQQEEVPPP
LNKPLVVELARCEWITTRSNIIALGPSGTGKTHVALALGLAACQKGHSVAFVTAAALVHELMEARDERRLRQLQKHLASVKLLILDELGYVPFTAVGSEL
LFEVLSQRYERGSTLITSNLPFDEWTSVFGSERLTGALLDRLTHHVHILEMNGGSYRLASSRKRQKHSHHAQQEEVPPP
Blast result :
Comments
ISFlsp1 is adjacent to the structural gene for parathion hydrolase (opd) and is potentially part of a complex catabolic transposon.
The IstA and IstB proteins are most similar to those encoded by an insertion sequence within the genome of Agrobacterium tumefaciens strain C58.
The IstA and IstB proteins are most similar to those encoded by an insertion sequence within the genome of Agrobacterium tumefaciens strain C58.
References
1] Merrick M. (2001) Direct submission