ISPpu8
- Family IS4
- Group IS4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pseudomonas putida | Pseudomonas putida KT2440 |
DNA section
IS Length : 1419 bp
Ends
IR Length : 18
IRL : CATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGA
IRR : CATCCCTTTCAAGGTCTTTTGGTTTTGGCGGCTTTGATGACCCGATCCGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCACCTTTCC | GCCCTTACGGC | GGGTCCCTTT | 11 |
TCACCTTTTC | GCCCTTACGGC | GAGTCACTTT | 11 |
AAAGTGACCC | GCCGTAAGGGC | GGAAAGGTGA | 11 |
GGGGAATTTC | GCCTTCAGGGT | GGGTTTGCCT | 11 |
AAAGTGACTC | GCCGTAAGGGC | GAAAAGGTGA | 11 |
DNA sequence
CATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCC
GCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCCGGAGTGGGTCGATCAGGTTTTCGAGGAGCACCGCCAACGGCAGTATTCTCGCGAGC
TGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGCCATCGCTGCATGCTGCGGCAAGACAACTGGACGACCTTCCCGTCAG
CCTGGCAGCTCTGTACGACAAGATCAGTCGAACCGAACCTGCCCTGTTGCGTGCTCTGGTGACAGGCTGCGCGCAGCGCTTGGCGCCGACAATCCATGAG
TTGGGCTGCTCAGCCATGCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTACCGAAAAGCGTCTTGGCGCGTTGCGCCAAGAGC
GCGGAGCGGCTCGCCCCGGGTTTTCGGTGGTGGTTTACGACCCCGACCTGGATCAGGTAATTGACCTCCAGCCGTGCGAGGACGCCTACGCAAGCGAACG
AGTTTGTGTTTTGCCGTTGCTGGCTGAAGCAAAGACCAATCAGGTTTGGATCGCTGACCGTCTCTACTGCACGCTGCCTGTAATGGAGGCGTGCGAACAG
GTGAAGACATCATTTGTCATTCGCCAGCAGGCCAAGCATCCACGCTTGATCCAGGAAGGTGAGTGGCAAGCACCGATGCCCGTCGCCACAGGCACTGTGC
GCGAGCAATCCATCGAAGTAAAAGGCGGGCACCGCTGGCGACGTGTCGAGTTAACGCTTCATTCACCAAACGACTCAGGTGATAACAGCTTGATGTTCTG
GAGCAACCTGCCCGAGAGCATCAGTGCGCAACAGATCGCAGACTTCTATCGGCGCCGCTGGAGCATTGAAGGGATGTTCCAGCGGTTGGAAGCAATTCTG
GAAAGTGAAATTGAAACCCTCGGCAGTCCGCGAGCCGCCTTGCTTGGATTCACCACTGCCGTGCTGGCATACAACGTTCTGGCCTTGCTCAAGCGAAGTG
TTGAACAGGCTCACCGCGATGCCTTGCCCGAGAATTGGGAAGCCTCGATCTATCACTTGGCGGTGCAGATCAGAGGGGGTTACGAAGGCATGCAGATTGC
CCTGCCATCCGAGTACATGCCCGTTGTTCCGATGGAAAACCTGGCTCAGCGCCTGCTGGAGCTGGCCAGAAACATCCAGCCCAGACAGGTTGCGAAAAGC
CCACGAGGCCCCAAGGTGCTCAAAGCGAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCA
AAAGACCTTGAAAGGGATG
GCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCCGGAGTGGGTCGATCAGGTTTTCGAGGAGCACCGCCAACGGCAGTATTCTCGCGAGC
TGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGCCATCGCTGCATGCTGCGGCAAGACAACTGGACGACCTTCCCGTCAG
CCTGGCAGCTCTGTACGACAAGATCAGTCGAACCGAACCTGCCCTGTTGCGTGCTCTGGTGACAGGCTGCGCGCAGCGCTTGGCGCCGACAATCCATGAG
TTGGGCTGCTCAGCCATGCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTACCGAAAAGCGTCTTGGCGCGTTGCGCCAAGAGC
GCGGAGCGGCTCGCCCCGGGTTTTCGGTGGTGGTTTACGACCCCGACCTGGATCAGGTAATTGACCTCCAGCCGTGCGAGGACGCCTACGCAAGCGAACG
AGTTTGTGTTTTGCCGTTGCTGGCTGAAGCAAAGACCAATCAGGTTTGGATCGCTGACCGTCTCTACTGCACGCTGCCTGTAATGGAGGCGTGCGAACAG
GTGAAGACATCATTTGTCATTCGCCAGCAGGCCAAGCATCCACGCTTGATCCAGGAAGGTGAGTGGCAAGCACCGATGCCCGTCGCCACAGGCACTGTGC
GCGAGCAATCCATCGAAGTAAAAGGCGGGCACCGCTGGCGACGTGTCGAGTTAACGCTTCATTCACCAAACGACTCAGGTGATAACAGCTTGATGTTCTG
GAGCAACCTGCCCGAGAGCATCAGTGCGCAACAGATCGCAGACTTCTATCGGCGCCGCTGGAGCATTGAAGGGATGTTCCAGCGGTTGGAAGCAATTCTG
GAAAGTGAAATTGAAACCCTCGGCAGTCCGCGAGCCGCCTTGCTTGGATTCACCACTGCCGTGCTGGCATACAACGTTCTGGCCTTGCTCAAGCGAAGTG
TTGAACAGGCTCACCGCGATGCCTTGCCCGAGAATTGGGAAGCCTCGATCTATCACTTGGCGGTGCAGATCAGAGGGGGTTACGAAGGCATGCAGATTGC
CCTGCCATCCGAGTACATGCCCGTTGTTCCGATGGAAAACCTGGCTCAGCGCCTGCTGGAGCTGGCCAGAAACATCCAGCCCAGACAGGTTGCGAAAAGC
CCACGAGGCCCCAAGGTGCTCAAAGCGAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCA
AAAGACCTTGAAAGGGATG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1302 bp | 433 aa | 110 | 1411 | + | No |
Chemistry : DDE
ORF sequence :
MAKLALEQAIAPEWVDQVFEEHRQRQYSRELLFSTIIKLMSLVSLGLKPSLHAAARQLDDLPVSLAALYDKISRTEPALLRALVTGCAQRLAPTIHELGC
SAMLPDWQVRVVDGSHLASTEKRLGALRQERGAARPGFSVVVYDPDLDQVIDLQPCEDAYASERVCVLPLLAEAKTNQVWIADRLYCTLPVMEACEQVKT
SFVIRQQAKHPRLIQEGEWQAPMPVATGTVREQSIEVKGGHRWRRVELTLHSPNDSGDNSLMFWSNLPESISAQQIADFYRRRWSIEGMFQRLEAILESE
IETLGSPRAALLGFTTAVLAYNVLALLKRSVEQAHRDALPENWEASIYHLAVQIRGGYEGMQIALPSEYMPVVPMENLAQRLLELARNIQPRQVAKSPRG
PKVLKAKAWVQGTAVHAHVSTDRVIKAAKTKRP
SAMLPDWQVRVVDGSHLASTEKRLGALRQERGAARPGFSVVVYDPDLDQVIDLQPCEDAYASERVCVLPLLAEAKTNQVWIADRLYCTLPVMEACEQVKT
SFVIRQQAKHPRLIQEGEWQAPMPVATGTVREQSIEVKGGHRWRRVELTLHSPNDSGDNSLMFWSNLPESISAQQIADFYRRRWSIEGMFQRLEAILESE
IETLGSPRAALLGFTTAVLAYNVLALLKRSVEQAHRDALPENWEASIYHLAVQIRGGYEGMQIALPSEYMPVVPMENLAQRLLELARNIQPRQVAKSPRG
PKVLKAKAWVQGTAVHAHVSTDRVIKAAKTKRP
Blast result :
Comments
There are 6 copies of ISPpu8 in this strain, and one copy lacks a target site duplication. ISPpu8 is closely related (55% identity) to ISRSo13 in Ralstonia solanacearum GMI1000. One copy of ISPpu8 disrupts a cellular gene.
References
1] DeBoy., R. (2002) Direct submission