KIS
- Family ISNCY
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
L29226 | ND | Lactobacillus delbrueckii | Lactobacillus delbrueckii subsp. lactis bacteriophage LL-K |
DNA section
IS Length : 1543 bp
Ends
IR Length : 0
IRL : AGGAGATGAATCATTGTGAGGGCTCTATATCTTGCCGACGGCAATGGCCG
IRR : ATTGGCCCCCGTTAAGCTGATCGAACAACGGCTCCTACGTCTTCTGGTGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGAGACGGGC | GATGACAAAAC/TCGAAGAAAG | TAGTAACCAA | 22 |
DNA sequence
AGGAGATGAATCATTGTGAGGGCTCTATATCTTGCCGACGGCAATGGCCGGTTCAAATTTGCCGATACCACAACAGAAATCCGTTTGAATGCTTTTGATG
ATGGTAGCCCAGCAACTTTAGCAGCAGATGCAAAGGTAAGAATCAAAAATGGCTCCGGATATTTGCTGGAGGTAAGTGCCAGTGTCACGAACAATCAAGC
AGTTATTACTAGCGGACAACTGAGCCAATTGCCAGCCGGAAGCTATCTGATTGAGCTGTGGGACACCGTAGACGGTGGTACTGCGATCTATCCTAGTGAA
GGATTTTTGGCACTTCAAATTAACGATAACGCCACCGGCCTCTCTGGCGGACTAGTCAGCAGTATCACGGTTGATGATTTTGTTAAACAGTTCAGTGACC
TTAGTCAGCAACTTAAAAAGGAAGTTTCTGATGCTGTGGCAAATGGTCTGAAGGGCGATAAGGGTGACGATGGGCTATCTGCCTATCAAGTAGCAGTTAT
TAATGGTTATAAGGGTTCACAAACGGACTGGCTTGCCTCTTTAGTTGGTCCTAAAGGTGACAAGGGCGATAAAGGCGATCCGGGTAAAGACTTTCGAATT
GTAAAGACGTTCCCATCCATTGCTGCAATGAATGGCGATGGCTTCTCTGATGGTGATTTCACCATGATTGCCAGTGACGTCAACGACCCAGATGATGGCA
AACTCTACGTATGGAATGGCAGCAGCTTCACATTTGTTGCCGATTTAAGCGGTTCTCAAGGTATCAAAGGTGAAAAGGGCGATAAAGGCGAAAAGGGTGA
CAAAGGCGATAAAGGCGATCAAGGGTTTTCTGCTTATCAAGTTGCCGTTAATGCCGGCTTCTCTGGCGGCGTTAATGACTGGCTTGCTTCTCTAGTTGGT
CCTAAAGGGGACAAGGGTGATAAGGGTGAAAGAGGTGATGCCGGTATCCATGTCATCACCCAAGCAGAGTATGATGTGCTAAATGACAAGTCTGGTGTCT
ACTTCATTGAGGGGTGATGAATATGCCGACAATTAATGGTAAAGTATGTGTTGTTAATGGCAAGCCGGTAGACAAGGTTTACAGCAATGGCAAGCAAGTA
TATGGTAGAAATCTTCTTGTGGGGATTGATAAGGCTATTCACCAAGCTTCCACCTGGATTCAATTGGTAGCAACCATTCCTGCAAAATCCATCGGAATGG
GACAGCATTTATGCTTTTCAGCGTTTATTAACAACGCCCCTTATGTAAAATACAACATTCATGGTAGCTCTTATTGTTCTATCCAAGCAATAGATTCATC
TGGTAACATCCTTTTGGAACAACGGGGCAATGCAGTAAATTTCGATGCTGATGGTATTAGCCAAGTAAGCCTAGTCGTTCCCGATAAGACAGACTCTATT
TCGCTATTTATTTATACTGACTGGATGGATCAAAACACATACTACGGTTACCCAAAGCTTGAAATAGGCACCGTAGCTACCCCGTGGACACCGGCACCAG
AAGACGTAGGAGCCGTTGTTCGATCAGCTTAACGGGGGCCAAT
ATGGTAGCCCAGCAACTTTAGCAGCAGATGCAAAGGTAAGAATCAAAAATGGCTCCGGATATTTGCTGGAGGTAAGTGCCAGTGTCACGAACAATCAAGC
AGTTATTACTAGCGGACAACTGAGCCAATTGCCAGCCGGAAGCTATCTGATTGAGCTGTGGGACACCGTAGACGGTGGTACTGCGATCTATCCTAGTGAA
GGATTTTTGGCACTTCAAATTAACGATAACGCCACCGGCCTCTCTGGCGGACTAGTCAGCAGTATCACGGTTGATGATTTTGTTAAACAGTTCAGTGACC
TTAGTCAGCAACTTAAAAAGGAAGTTTCTGATGCTGTGGCAAATGGTCTGAAGGGCGATAAGGGTGACGATGGGCTATCTGCCTATCAAGTAGCAGTTAT
TAATGGTTATAAGGGTTCACAAACGGACTGGCTTGCCTCTTTAGTTGGTCCTAAAGGTGACAAGGGCGATAAAGGCGATCCGGGTAAAGACTTTCGAATT
GTAAAGACGTTCCCATCCATTGCTGCAATGAATGGCGATGGCTTCTCTGATGGTGATTTCACCATGATTGCCAGTGACGTCAACGACCCAGATGATGGCA
AACTCTACGTATGGAATGGCAGCAGCTTCACATTTGTTGCCGATTTAAGCGGTTCTCAAGGTATCAAAGGTGAAAAGGGCGATAAAGGCGAAAAGGGTGA
CAAAGGCGATAAAGGCGATCAAGGGTTTTCTGCTTATCAAGTTGCCGTTAATGCCGGCTTCTCTGGCGGCGTTAATGACTGGCTTGCTTCTCTAGTTGGT
CCTAAAGGGGACAAGGGTGATAAGGGTGAAAGAGGTGATGCCGGTATCCATGTCATCACCCAAGCAGAGTATGATGTGCTAAATGACAAGTCTGGTGTCT
ACTTCATTGAGGGGTGATGAATATGCCGACAATTAATGGTAAAGTATGTGTTGTTAATGGCAAGCCGGTAGACAAGGTTTACAGCAATGGCAAGCAAGTA
TATGGTAGAAATCTTCTTGTGGGGATTGATAAGGCTATTCACCAAGCTTCCACCTGGATTCAATTGGTAGCAACCATTCCTGCAAAATCCATCGGAATGG
GACAGCATTTATGCTTTTCAGCGTTTATTAACAACGCCCCTTATGTAAAATACAACATTCATGGTAGCTCTTATTGTTCTATCCAAGCAATAGATTCATC
TGGTAACATCCTTTTGGAACAACGGGGCAATGCAGTAAATTTCGATGCTGATGGTATTAGCCAAGTAAGCCTAGTCGTTCCCGATAAGACAGACTCTATT
TCGCTATTTATTTATACTGACTGGATGGATCAAAACACATACTACGGTTACCCAAAGCTTGAAATAGGCACCGTAGCTACCCCGTGGACACCGGCACCAG
AAGACGTAGGAGCCGTTGTTCGATCAGCTTAACGGGGGCCAAT
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1002 bp | 333 aa | 16 | 1017 | + | No |
ORF sequence :
MRALYLADGNGRFKFADTTTEIRLNAFDDGSPATLAADAKVRIKNGSGYLLEVSASVTNNQAVITSGQLSQLPAGSYLIELWDTVDGGTAIYPSEGFLAL
QINDNATGLSGGLVSSITVDDFVKQFSDLSQQLKKEVSDAVANGLKGDKGDDGLSAYQVAVINGYKGSQTDWLASLVGPKGDKGDKGDPGKDFRIVKTFP
SIAAMNGDGFSDGDFTMIASDVNDPDDGKLYVWNGSSFTFVADLSGSQGIKGEKGDKGEKGDKGDKGDQGFSAYQVAVNAGFSGGVNDWLASLVGPKGDK
GDKGERGDAGIHVITQAEYDVLNDKSGVYFIEG
QINDNATGLSGGLVSSITVDDFVKQFSDLSQQLKKEVSDAVANGLKGDKGDDGLSAYQVAVINGYKGSQTDWLASLVGPKGDKGDKGDPGKDFRIVKTFP
SIAAMNGDGFSDGDFTMIASDVNDPDDGKLYVWNGSSFTFVADLSGSQGIKGEKGDKGEKGDKGDKGDQGFSAYQVAVNAGFSGGVNDWLASLVGPKGDK
GDKGERGDAGIHVITQAEYDVLNDKSGVYFIEG
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
516 bp | 171 aa | 1017 | 1532 | + | No |
ORF sequence :
MNMPTINGKVCVVNGKPVDKVYSNGKQVYGRNLLVGIDKAIHQASTWIQLVATIPAKSIGMGQHLCFSAFINNAPYVKYNIHGSSYCSIQAIDSSGNILL
EQRGNAVNFDADGISQVSLVVPDKTDSISLFIYTDWMDQNTYYGYPKLEIGTVATPWTPAPEDVGAVVRSA
EQRGNAVNFDADGISQVSLVVPDKTDSISLFIYTDWMDQNTYYGYPKLEIGTVATPWTPAPEDVGAVVRSA
Blast result :
Comments
Note : this is a putative IS. KIS was isolated in bacteriophage LL-K, it is not present in the original host Lactobacillus delbrueckii subsp. Lactis genome.
ORF1 shows significant homology to MIS (accession number : L41843) of bacteriophage mv4 of Lactobacillus delbrueckii.
ORF1 shows significant homology to MIS (accession number : L41843) of bacteriophage mv4 of Lactobacillus delbrueckii.
References
1] Forsman,P. and Alatossava,T.(1994) Arch. Virol. 137, 43-54