ISCge1
- Family IS256
- Group IS1249
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_CM000961 | ND | Corynebacterium genitalium | Corynebacterium genitalium ATCC 33030 |
DNA section
IS Length : 1386 bp
Ends
IR Length : 25/27
IRL : GGGTTAAACGACAAAAAGTGTGTCCGGAATCGCCGGTTTCCGGGGCTTAA
IRR : GGGTTAAACGACAAAATGTGTGTCTGGCTCGGCGTGTCGTGGGGGTTAGA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GTTATGCGAA | CCCCTAGG | CGCCAAACAT | 8 |
DNA sequence
GGGTTAAACGACAAAAAGTGTGTCCGGAATCGCCGGTTTCCGGGGCTTAACCACGAGGTTTCAGGAAAATATATGCTTCTGGGGCATATATCTGGCTTCC
TGACGGCAAATCCACGGAGGGGCTAGCGCTGTGTGCTATGTACGCCGTGGTGTGGTGGCGCAATGCCAAAGAACCAACCACGCTGCTACTGCGGCGGCGA
GATGAAACGCAACGGCACCACCAGCAAAGGCACCACCAGATGGCGGTGCAAACAATGCGGCGCATCCAGCGTGAAGCACCGCGGCGACATCACCAATGCA
GCGGTGTTTACCGCCTTCATTGATCATCTCACCACCGGCACCAGTCTCGATGCTGTTGCCCACCGCGTGGGATGTTCGCCCCGTACGCTGCAACGCCGGT
TCGAACCGTTCTGGCTCATTGATGTGCCCGACCCCACCAATGCACATTGTGGAAGAGTTTACGACCAGGTGTTTTTAGACGGCACCTACACCGCCGGCGG
CTGTTTGATCGTCGCTGCCACCATCGATCACGTCATTGCCTGGCACTGGTGCAAACACGAAACCACCCGCGACTACCAGCGACTGCTCGAACGCATCGAA
GCGCCACTGATCGCTGTGATCGACGGCGGCCAAGGAGCCTTTAGCGCGATTAGAAAGTGCTGGCCGACCACGAAAATTCAACGCTGCCTCGTCCACGCCC
AACGCGTCGTGCGACGCTACACCACCTCACGCCCGCGCACAGATGCTGGGCGCACCATCTACCAACTTGCGCTGAAACTGACTCGGATCACCACCTTGGA
TGGAGCAGCAAAATGGGGCGCGCAACTGCACGAATTCTCTACGATCTACCAAGCCTGGATGGACGAGAAAACCACGGTCAAAGACCCCAAAACCGGTACG
TGGACTCGCGTGTGGACACACCACAACGTGCGCAAGGCCTACAACAGTCTCAACCACCTCTGGCGGTCCGACCTGCTGTTTGTCTACCTCAAGCCCCCAG
AAACAGTCCTTGATCCTGACCGGATCAAATCCACCACAAACAGTCTGGAAGGCGGTATCAACGCCCAGCTCAAACTGCTCGCCAGGACACACCGCGGCAG
ATCAGGTGAACGACAACGCCGAATGCTGGATTGGTGGCTCTACCTGAAAACGGAACTGCCTGACGATCCCGTACGAATCGCCAGGCAGTCCAACTGGGGC
CAGGACCAACTCGCCAAAGTAACAACCCTGACCCACAACGAGAACCAAGCCGACCACCAAACAGGACGACCAGCCCTCTACGACAACGCTATCGACACCA
ACTACAACCACTCAATCGGCATCCAAAAAGGCCAGATCTAACCCCCACGACACGCCGAGCCAGACACACATTTTGTCGTTTAACCC
TGACGGCAAATCCACGGAGGGGCTAGCGCTGTGTGCTATGTACGCCGTGGTGTGGTGGCGCAATGCCAAAGAACCAACCACGCTGCTACTGCGGCGGCGA
GATGAAACGCAACGGCACCACCAGCAAAGGCACCACCAGATGGCGGTGCAAACAATGCGGCGCATCCAGCGTGAAGCACCGCGGCGACATCACCAATGCA
GCGGTGTTTACCGCCTTCATTGATCATCTCACCACCGGCACCAGTCTCGATGCTGTTGCCCACCGCGTGGGATGTTCGCCCCGTACGCTGCAACGCCGGT
TCGAACCGTTCTGGCTCATTGATGTGCCCGACCCCACCAATGCACATTGTGGAAGAGTTTACGACCAGGTGTTTTTAGACGGCACCTACACCGCCGGCGG
CTGTTTGATCGTCGCTGCCACCATCGATCACGTCATTGCCTGGCACTGGTGCAAACACGAAACCACCCGCGACTACCAGCGACTGCTCGAACGCATCGAA
GCGCCACTGATCGCTGTGATCGACGGCGGCCAAGGAGCCTTTAGCGCGATTAGAAAGTGCTGGCCGACCACGAAAATTCAACGCTGCCTCGTCCACGCCC
AACGCGTCGTGCGACGCTACACCACCTCACGCCCGCGCACAGATGCTGGGCGCACCATCTACCAACTTGCGCTGAAACTGACTCGGATCACCACCTTGGA
TGGAGCAGCAAAATGGGGCGCGCAACTGCACGAATTCTCTACGATCTACCAAGCCTGGATGGACGAGAAAACCACGGTCAAAGACCCCAAAACCGGTACG
TGGACTCGCGTGTGGACACACCACAACGTGCGCAAGGCCTACAACAGTCTCAACCACCTCTGGCGGTCCGACCTGCTGTTTGTCTACCTCAAGCCCCCAG
AAACAGTCCTTGATCCTGACCGGATCAAATCCACCACAAACAGTCTGGAAGGCGGTATCAACGCCCAGCTCAAACTGCTCGCCAGGACACACCGCGGCAG
ATCAGGTGAACGACAACGCCGAATGCTGGATTGGTGGCTCTACCTGAAAACGGAACTGCCTGACGATCCCGTACGAATCGCCAGGCAGTCCAACTGGGGC
CAGGACCAACTCGCCAAAGTAACAACCCTGACCCACAACGAGAACCAAGCCGACCACCAAACAGGACGACCAGCCCTCTACGACAACGCTATCGACACCA
ACTACAACCACTCAATCGGCATCCAAAAAGGCCAGATCTAACCCCCACGACACGCCGAGCCAGACACACATTTTGTCGTTTAACCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1179 bp | 392 aa | 163 | 1341 | + | No |
Chemistry : DDE
ORF sequence :
MPKNQPRCYCGGEMKRNGTTSKGTTRWRCKQCGASSVKHRGDITNAAVFTAFIDHLTTGTSLDAVAHRVGCSPRTLQRRFEPFWLIDVPDPTNAHCGRVY
DQVFLDGTYTAGGCLIVAATIDHVIAWHWCKHETTRDYQRLLERIEAPLIAVIDGGQGAFSAIRKCWPTTKIQRCLVHAQRVVRRYTTSRPRTDAGRTIY
QLALKLTRITTLDGAAKWGAQLHEFSTIYQAWMDEKTTVKDPKTGTWTRVWTHHNVRKAYNSLNHLWRSDLLFVYLKPPETVLDPDRIKSTTNSLEGGIN
AQLKLLARTHRGRSGERQRRMLDWWLYLKTELPDDPVRIARQSNWGQDQLAKVTTLTHNENQADHQTGRPALYDNAIDTNYNHSIGIQKGQI
DQVFLDGTYTAGGCLIVAATIDHVIAWHWCKHETTRDYQRLLERIEAPLIAVIDGGQGAFSAIRKCWPTTKIQRCLVHAQRVVRRYTTSRPRTDAGRTIY
QLALKLTRITTLDGAAKWGAQLHEFSTIYQAWMDEKTTVKDPKTGTWTRVWTHHNVRKAYNSLNHLWRSDLLFVYLKPPETVLDPDRIKSTTNSLEGGIN
AQLKLLARTHRGRSGERQRRMLDWWLYLKTELPDDPVRIARQSNWGQDQLAKVTTLTHNENQADHQTGRPALYDNAIDTNYNHSIGIQKGQI
Blast result :
Comments
ISCge1 is 94% aa similar to IS3507.
References
1] ISfinder annotation (2013)
2] Qin,X., Bachman,B., Battles,P., Bell,A., Bess,C., Bickham,C.,Chaboub,L., Chen,D., Coyle,M., Deiros,D.R., Dinh,H., Forbes,L., Fowler,G., Francisco,L., Fu,Q., Gubbala,S., Hale,W., Han,Y., Hemphill,L., Highlander,S.K., Hirani,K., Hogues,M., Jackson,L., Jakkamsetti,A., Javaid,M., Jiang,H., Korchina,V., Kovar,C., Lara,F., Lee,S., Mata,R., Mathew,T., Moen,C., Morales,K., Munidasa,M., Nazareth,L., Ngo,R., Nguyen,L., Okwuonu,G., Ongeri,F., Patil,S., Petrosino,J., Pham,C., Pham,P., Pu,L.-L., Puazo,M., Raj,R., Reid,J., Rouhana,J., Saada,N., Shang,Y., Simmons,D.,
Thornton,R., Warren,J., Weissenberger,G., Zhang,J., Zhang,L., Zhou,C., Zhu,D., Muzny,D., Worley,K. and Gibbs,R. (2010) Direct submission GenBank.
2] Qin,X., Bachman,B., Battles,P., Bell,A., Bess,C., Bickham,C.,Chaboub,L., Chen,D., Coyle,M., Deiros,D.R., Dinh,H., Forbes,L., Fowler,G., Francisco,L., Fu,Q., Gubbala,S., Hale,W., Han,Y., Hemphill,L., Highlander,S.K., Hirani,K., Hogues,M., Jackson,L., Jakkamsetti,A., Javaid,M., Jiang,H., Korchina,V., Kovar,C., Lara,F., Lee,S., Mata,R., Mathew,T., Moen,C., Morales,K., Munidasa,M., Nazareth,L., Ngo,R., Nguyen,L., Okwuonu,G., Ongeri,F., Patil,S., Petrosino,J., Pham,C., Pham,P., Pu,L.-L., Puazo,M., Raj,R., Reid,J., Rouhana,J., Saada,N., Shang,Y., Simmons,D.,
Thornton,R., Warren,J., Weissenberger,G., Zhang,J., Zhang,L., Zhou,C., Zhu,D., Muzny,D., Worley,K. and Gibbs,R. (2010) Direct submission GenBank.