ISVsa3
- Family IS91
- Group
Isoform Synonym(s) ISVs3
Accession number | Transposition | Origin | Host |
---|---|---|---|
AJ289135 | ND | Vibrio salmonicida | Escherichia coli Vibrio cholerae Vibrio salmonicida Salmonella enterica subsp. enterica serovar Choleraesuis |
DNA section
IS Length : 977 bp
Ends
oriIS : GCGTTTTGGATCGGCGCTCAATCTGAATGTTCACTTCCACATGCTGTTTCTCGACGGTGTGTATGTCGAGCAATCCCACGGCTCAGCGCGTTTCCGCTGG II struct. : No
terIS : AAGCACAAAGCCGAAACCAGCGGGACCAGGGCGTTACCCGAAAGCCGGGCGCCACCGGCTGAGCTGCTCCTGGGTCTGTTTGACTGACGAGCCTGAAGGC II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CACCCTGATCCA | CAACGATACCAA |
DNA sequence
GCGTTTTGGATCGGCGCTCAATCTGAATGTTCACTTCCACATGCTGTTTCTCGACGGTGTGTATGTCGAGCAATCCCACGGCTCAGCGCGTTTCCGCTGG
GTCAAGGCGCCGACCAGCCCAGAGCTCACCCAGCTGACGCACACCATCGCCCACCGGGTGGGTCGCTATCTGGAACGGCAAGGCCTGCTGGAACGGGATG
TCGAAAACAGCTATCTGGCCTCGGATGCGGTGGATGACGACCCGATGACACCCCTGCTGGGGCACTCGATCACTTACCGTATCGCTGTCGGTTCACAGGC
GGGGCGAAAGGTGTTCACTTTGCAAACTCTGCCGACCAGTGGTGATCCGTTCGGTGACGGGATTGGCAAGGTAGCCGGGTCCAGCCTGCACGCCGGCGTG
GCGGCCAGGGCCGATGAACGCAAGAAGCTCGAACGGCTGTGCCGGTACATCAGCCGCCCGGCGGTATCCGAGAAGCGGCTGTCGTTAACACGAGGCGGCA
ACGTGCGCTACCAGCTCAAGACGCCGTACCGGGACGGCACCACGCACGTCATTTTCGAACCATTGGATTTCATTGCAAGGCTGGCCGCCCTGGTACCGAA
GCCCAGAGTCAACCTAACCCGCTTCCACGGGGTGTTCGCACCCAACAGTCGGCACCGGGCGTTGGTCACGCCGGCAAAACGGGGCAGGGGCAACAAGGTC
AGGGTGGCTGATGAACCGGCAACACCAGCACAACGGCGAGCGTCGATGACATGGGCGCAACGGCTCAAGCGTGTTTTCAATATCGACATCGAGACCTGCA
GCGGCTGCGGCGGCGCCATGAAAGTCATCGCCTGCATTGAAGACCCTATAGTGATCAAGCAGATCCTTGATCACCTGAAGCACAAAGCCGAAACCAGCGG
GACCAGGGCGTTACCCGAAAGCCGGGCGCCACCGGCTGAGCTGCTCCTGGGTCTGTTTGACTGACGAGCCTGAAGGC
GTCAAGGCGCCGACCAGCCCAGAGCTCACCCAGCTGACGCACACCATCGCCCACCGGGTGGGTCGCTATCTGGAACGGCAAGGCCTGCTGGAACGGGATG
TCGAAAACAGCTATCTGGCCTCGGATGCGGTGGATGACGACCCGATGACACCCCTGCTGGGGCACTCGATCACTTACCGTATCGCTGTCGGTTCACAGGC
GGGGCGAAAGGTGTTCACTTTGCAAACTCTGCCGACCAGTGGTGATCCGTTCGGTGACGGGATTGGCAAGGTAGCCGGGTCCAGCCTGCACGCCGGCGTG
GCGGCCAGGGCCGATGAACGCAAGAAGCTCGAACGGCTGTGCCGGTACATCAGCCGCCCGGCGGTATCCGAGAAGCGGCTGTCGTTAACACGAGGCGGCA
ACGTGCGCTACCAGCTCAAGACGCCGTACCGGGACGGCACCACGCACGTCATTTTCGAACCATTGGATTTCATTGCAAGGCTGGCCGCCCTGGTACCGAA
GCCCAGAGTCAACCTAACCCGCTTCCACGGGGTGTTCGCACCCAACAGTCGGCACCGGGCGTTGGTCACGCCGGCAAAACGGGGCAGGGGCAACAAGGTC
AGGGTGGCTGATGAACCGGCAACACCAGCACAACGGCGAGCGTCGATGACATGGGCGCAACGGCTCAAGCGTGTTTTCAATATCGACATCGAGACCTGCA
GCGGCTGCGGCGGCGCCATGAAAGTCATCGCCTGCATTGAAGACCCTATAGTGATCAAGCAGATCCTTGATCACCTGAAGCACAAAGCCGAAACCAGCGG
GACCAGGGCGTTACCCGAAAGCCGGGCGCCACCGGCTGAGCTGCTCCTGGGTCTGTTTGACTGACGAGCCTGAAGGC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
924 bp | 307 aa | 41 | 964 | + | No |
Chemistry : Y2
ORF sequence :
MLFLDGVYVEQSHGSARFRWVKAPTSPELTQLTHTIAHRVGRYLERQGLLERDVENSYLASDAVDDDPMTPLLGHSITYRIAVGSQAGRKVFTLQTLPTS
GDPFGDGIGKVAGSSLHAGVAARADERKKLERLCRYISRPAVSEKRLSLTRGGNVRYQLKTPYRDGTTHVIFEPLDFIARLAALVPKPRVNLTRFHGVFA
PNSRHRALVTPAKRGRGNKVRVADEPATPAQRRASMTWAQRLKRVFNIDIETCSGCGGAMKVIACIEDPIVIKQILDHLKHKAETSGTRALPESRAPPAE
LLLGLFD
GDPFGDGIGKVAGSSLHAGVAARADERKKLERLCRYISRPAVSEKRLSLTRGGNVRYQLKTPYRDGTTHVIFEPLDFIARLAALVPKPRVNLTRFHGVFA
PNSRHRALVTPAKRGRGNKVRVADEPATPAQRRASMTWAQRLKRVFNIDIETCSGCGGAMKVIACIEDPIVIKQILDHLKHKAETSGTRALPESRAPPAE
LLLGLFD
Blast result :
Comments
ISVsa3 was renamed according to the nomenclature for Vibrio salmonicida.
ISVsa3 is 42% aa similar to ISPps1.
Other copies of this sequence were found in :
Vibrio cholerae : AY034138 ; coordinates 7065-6089 (and 10623-11040, truncated) ; 100% DNA and aa similar.
Salmonella enterica subsp. enterica serovar Choleraesuis : AB076707 ; coordinates 4537-5513 ; 100% DNA and aa similar.
Escherichia coli : AF231986 ; coordinates 1213-2189 and 5497-6473 ; 99% DNA and aa similar, mutation at position 861 (DNA) G -> C.
For these last three hosts, all the insertion sites are identical (N10(DR)N10).
ISVsa3 is 42% aa similar to ISPps1.
Other copies of this sequence were found in :
Vibrio cholerae : AY034138 ; coordinates 7065-6089 (and 10623-11040, truncated) ; 100% DNA and aa similar.
Salmonella enterica subsp. enterica serovar Choleraesuis : AB076707 ; coordinates 4537-5513 ; 100% DNA and aa similar.
Escherichia coli : AF231986 ; coordinates 1213-2189 and 5497-6473 ; 99% DNA and aa similar, mutation at position 861 (DNA) G -> C.
For these last three hosts, all the insertion sites are identical (N10(DR)N10).
References
1] Sorum,H (2000) Direct submission GenBank
2] Hochhut, B., Lofti, Y., Mazel, D., Faruque, S.M., Woodgate, R. and Waldor, M.K. (2001) Antimicrob. Agents Chemother 45 (11), 2991-3000
3] Hochhut, B., Waldor, M.K., Lofti, Y. and Mazel, D. (2001) Direct submission GenBank.
4] Haneda, T. and Okada, N. (2001) Direct submission GenBank
5]Cloeckaert,A., Baucheron,S., Flaujac,G., Schwarz,S., Kehrenberg,C., Martel,J.L. and Chaslus-Dancla,E. (2000) Antimicrob. Agents Chemother. 44 (10), 2858-2860
6] Cloeckaert,A. and Baucheron,S. (2000) Direct submission GenBank.
2] Hochhut, B., Lofti, Y., Mazel, D., Faruque, S.M., Woodgate, R. and Waldor, M.K. (2001) Antimicrob. Agents Chemother 45 (11), 2991-3000
3] Hochhut, B., Waldor, M.K., Lofti, Y. and Mazel, D. (2001) Direct submission GenBank.
4] Haneda, T. and Okada, N. (2001) Direct submission GenBank
5]Cloeckaert,A., Baucheron,S., Flaujac,G., Schwarz,S., Kehrenberg,C., Martel,J.L. and Chaslus-Dancla,E. (2000) Antimicrob. Agents Chemother. 44 (10), 2858-2860
6] Cloeckaert,A. and Baucheron,S. (2000) Direct submission GenBank.