ISV-M52
- Family IS5
- Group IS903
Isoform Synonym(s) ISVM5-2, ISVm5-2, ISV-ML, ISVML, ISV-MR,
Accession number | Transposition | Origin | Host |
---|---|---|---|
M64129 | N | Vibrio mimicus | Vibrio parahaemolyticus Vibrio cholerae Vibrio mimicus 6 |
DNA section
IS Length : 1044 bp
Ends
IR Length : 17/18
IRL : GGCTTTGTTGCGTAAATCGATGGAACTAAATTCAAAGCTTACGATCCGAT
IRR : GGCTTTGTTGCGTAAGTCATTTTCGAAGCCGAACAGCCCTATTTAGATTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGCTTTGTTGCGTAAATCGATGGAACTAAATTCAAAGCTTACGATCCGATCGGCCACGTTCATTCAACTCTGTAGTCTCATGCCTAAACCACGTTACAAA
ACAAACAACTGGAAGCAATACAATCAAGCTTTCATCAACCGCGGCTCTGTGACGTTTTGGATTGATGAAGAAGCGATAAGAGAGTGGAAACAAGGCAAGC
AAAACAAGCGCGGGAGACCTCGTATTTTCAGTGAGTTGGCCATCACAACCGCTTTGATGGTAAAGCGCATTTTTTCAATGCCACTTCGCCGTTCGCAAGG
GTTTATGGATCCCGTGTTTCGACTTGCTCAACTTCCACTGCGCTGCCCACACTACAGTTGTATCAGTCGTCGAGCCAAAGACGTTGATGTAAGTTTTAAA
ACGAAAACCAAAGGACCGATTCAGCATCTTGCTATCGATGCGACAGGTCTCAAGGTTTATGGTGAGGGCAAGTGGAAAGTCAAAAAACATGGCACGGATG
GTAAACTCAGAGTGTGGCGGAAATTACATCTCGCAGTAGATACGAGTACGCACGAAATTATTGCCGCAGAGTTGAGTTTATCAACGGTGAGTGAGGCAGA
AGTGCTGCCTAATTTGCTTAAGCAAACACGTCGGAAAATCCTTGAGATATCAGGCGATGGGGCTTATGACACGAGGGATTGCCACGCAGCAATCCGTATT
AGACGAACCGTGGCTCTTATCCCTCCAAGAGAGGGAGCGGCATTCTGGGAAAGAGGTCATCCGAGAAATGGTTGCCAAAAGCTATATGGTTCGAACAAGT
ATTGGAAAAAGCGCTATGGCTACCACAAGCGCTCGCTATCTGAAACGGCGATGTATCGAGTCAAACAGTTGCTTGGTGGACGGCTAAGTCTAAGAAATTA
CAACGCACAAGTTGGTGAAACTTACGCGATGATCAAAGCGTTGAACAAGCTTACAGGCTTGGTATGCCTAAAACTTGTCGTATTGGCTGACAATTAATCT
AAATAGGGCTGTTCGGCTTCGAAAATGACTTACGCAACAAAGCC
ACAAACAACTGGAAGCAATACAATCAAGCTTTCATCAACCGCGGCTCTGTGACGTTTTGGATTGATGAAGAAGCGATAAGAGAGTGGAAACAAGGCAAGC
AAAACAAGCGCGGGAGACCTCGTATTTTCAGTGAGTTGGCCATCACAACCGCTTTGATGGTAAAGCGCATTTTTTCAATGCCACTTCGCCGTTCGCAAGG
GTTTATGGATCCCGTGTTTCGACTTGCTCAACTTCCACTGCGCTGCCCACACTACAGTTGTATCAGTCGTCGAGCCAAAGACGTTGATGTAAGTTTTAAA
ACGAAAACCAAAGGACCGATTCAGCATCTTGCTATCGATGCGACAGGTCTCAAGGTTTATGGTGAGGGCAAGTGGAAAGTCAAAAAACATGGCACGGATG
GTAAACTCAGAGTGTGGCGGAAATTACATCTCGCAGTAGATACGAGTACGCACGAAATTATTGCCGCAGAGTTGAGTTTATCAACGGTGAGTGAGGCAGA
AGTGCTGCCTAATTTGCTTAAGCAAACACGTCGGAAAATCCTTGAGATATCAGGCGATGGGGCTTATGACACGAGGGATTGCCACGCAGCAATCCGTATT
AGACGAACCGTGGCTCTTATCCCTCCAAGAGAGGGAGCGGCATTCTGGGAAAGAGGTCATCCGAGAAATGGTTGCCAAAAGCTATATGGTTCGAACAAGT
ATTGGAAAAAGCGCTATGGCTACCACAAGCGCTCGCTATCTGAAACGGCGATGTATCGAGTCAAACAGTTGCTTGGTGGACGGCTAAGTCTAAGAAATTA
CAACGCACAAGTTGGTGAAACTTACGCGATGATCAAAGCGTTGAACAAGCTTACAGGCTTGGTATGCCTAAAACTTGTCGTATTGGCTGACAATTAATCT
AAATAGGGCTGTTCGGCTTCGAAAATGACTTACGCAACAAAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
918 bp | 305 aa | 80 | 997 | + | No |
Chemistry : DDE
ORF sequence :
MPKPRYKTNNWKQYNQAFINRGSVTFWIDEEAIREWKQGKQNKRGRPRIFSELAITTALMVKRIFSMPLRRSQGFMDPVFRLAQLPLRCPHYSCISRRAK
DVDVSFKTKTKGPIQHLAIDATGLKVYGEGKWKVKKHGTDGKLRVWRKLHLAVDTSTHEIIAAELSLSTVSEAEVLPNLLKQTRRKILEISGDGAYDTRD
CHAAIRIRRTVALIPPREGAAFWERGHPRNGCQKLYGSNKYWKKRYGYHKRSLSETAMYRVKQLLGGRLSLRNYNAQVGETYAMIKALNKLTGLVCLKLV
VLADN
DVDVSFKTKTKGPIQHLAIDATGLKVYGEGKWKVKKHGTDGKLRVWRKLHLAVDTSTHEIIAAELSLSTVSEAEVLPNLLKQTRRKILEISGDGAYDTRD
CHAAIRIRRTVALIPPREGAAFWERGHPRNGCQKLYGSNKYWKKRYGYHKRSLSETAMYRVKQLLGGRLSLRNYNAQVGETYAMIKALNKLTGLVCLKLV
VLADN
Blast result :
Comments
ISV-M52 is the only "ISV" element with a complete putative transposase.
However, two independent transposition trials were unsuccessful.
ISVM-52 and ISVa2 transposases are 85 % identical.
However, two independent transposition trials were unsuccessful.
ISVM-52 and ISVa2 transposases are 85 % identical.
References
1] Terai, A., Baba, K., Shirai, H., Yoshida, O., Takeda, Y., and Nishibuchi, M. (1991) J. Bacteriol. 173, 5036-5046.