ISV-M52

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s) ISVM5-2, ISVm5-2, ISV-ML, ISVML, ISV-MR,
Accession numberTranspositionOriginHost
M64129 N Vibrio mimicus
Vibrio parahaemolyticus
Vibrio cholerae
Vibrio mimicus 6
DNA section
IS Length : 1044 bp

Ends


IR Length : 17/18

IRL : GGCTTTGTTGCGTAAATCGATGGAACTAAATTCAAAGCTTACGATCCGAT
IRR : GGCTTTGTTGCGTAAGTCATTTTCGAAGCCGAACAGCCCTATTTAGATTA

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGCTTTGTTGCGTAAATCGATGGAACTAAATTCAAAGCTTACGATCCGATCGGCCACGTTCATTCAACTCTGTAGTCTCATGCCTAAACCACGTTACAAA
ACAAACAACTGGAAGCAATACAATCAAGCTTTCATCAACCGCGGCTCTGTGACGTTTTGGATTGATGAAGAAGCGATAAGAGAGTGGAAACAAGGCAAGC
AAAACAAGCGCGGGAGACCTCGTATTTTCAGTGAGTTGGCCATCACAACCGCTTTGATGGTAAAGCGCATTTTTTCAATGCCACTTCGCCGTTCGCAAGG
GTTTATGGATCCCGTGTTTCGACTTGCTCAACTTCCACTGCGCTGCCCACACTACAGTTGTATCAGTCGTCGAGCCAAAGACGTTGATGTAAGTTTTAAA
ACGAAAACCAAAGGACCGATTCAGCATCTTGCTATCGATGCGACAGGTCTCAAGGTTTATGGTGAGGGCAAGTGGAAAGTCAAAAAACATGGCACGGATG
GTAAACTCAGAGTGTGGCGGAAATTACATCTCGCAGTAGATACGAGTACGCACGAAATTATTGCCGCAGAGTTGAGTTTATCAACGGTGAGTGAGGCAGA
AGTGCTGCCTAATTTGCTTAAGCAAACACGTCGGAAAATCCTTGAGATATCAGGCGATGGGGCTTATGACACGAGGGATTGCCACGCAGCAATCCGTATT
AGACGAACCGTGGCTCTTATCCCTCCAAGAGAGGGAGCGGCATTCTGGGAAAGAGGTCATCCGAGAAATGGTTGCCAAAAGCTATATGGTTCGAACAAGT
ATTGGAAAAAGCGCTATGGCTACCACAAGCGCTCGCTATCTGAAACGGCGATGTATCGAGTCAAACAGTTGCTTGGTGGACGGCTAAGTCTAAGAAATTA
CAACGCACAAGTTGGTGAAACTTACGCGATGATCAAAGCGTTGAACAAGCTTACAGGCTTGGTATGCCTAAAACTTGTCGTATTGGCTGACAATTAATCT
AAATAGGGCTGTTCGGCTTCGAAAATGACTTACGCAACAAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
918 bp305 aa80997+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPKPRYKTNNWKQYNQAFINRGSVTFWIDEEAIREWKQGKQNKRGRPRIFSELAITTALMVKRIFSMPLRRSQGFMDPVFRLAQLPLRCPHYSCISRRAK
DVDVSFKTKTKGPIQHLAIDATGLKVYGEGKWKVKKHGTDGKLRVWRKLHLAVDTSTHEIIAAELSLSTVSEAEVLPNLLKQTRRKILEISGDGAYDTRD
CHAAIRIRRTVALIPPREGAAFWERGHPRNGCQKLYGSNKYWKKRYGYHKRSLSETAMYRVKQLLGGRLSLRNYNAQVGETYAMIKALNKLTGLVCLKLV
VLADN

 

Blast result :
Comments
ISV-M52 is the only "ISV" element with a complete putative transposase.
However, two independent transposition trials were unsuccessful.
ISVM-52 and ISVa2 transposases are 85 % identical.
References
1] Terai, A., Baba, K., Shirai, H., Yoshida, O., Takeda, Y., and Nishibuchi, M. (1991) J. Bacteriol. 173, 5036-5046.