ISHsp1
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JX569339 | Y | Halomonas sp. | Halomonas sp. ZM3 |
DNA section
IS Length : 1518 bp
Ends
IR Length : 15
IRL : GTCGACCCTGCAAAAGTAAAAACCTGAATCAAGGCAATAAGTTGGCCTGA
IRR : GTCGACCCTGCAAAACGCCGTTTTCAGATCGCCAGCAATTCACCGGTCTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGGCCACAAA | TACTTA | GTATTTGAAG | 6 |
DNA sequence
GTCGACCCTGCAAAAGTAAAAACCTGAATCAAGGCAATAAGTTGGCCTGATTTCAGGGTATAATTTCCACCATAAATCTCTCCGTTTCGCCCAAAAACCG
GAAGAAAACGCCATGATTCCACGGGATAAGCGCCAGGCACCACAGCGAGATCTGTTGGAAACCTACCTCGAAGACATCCTCAATACCCGACACGAGTTGG
TGCAGCTGGGAAAGCGTATCGACTGGTCTGCCTGCGAACAGCACTTCGGCCAGTTGTATGCGGTGCAAGCCGGGCGTCCAGGGCTGCCCATCCGGTTACA
CGTGGGCTTACAGTTGCTCAAGCACATGTACGCGCTGTCCGATCGTGATGTGCTGGACCGCTGGGTAGAGAACCCCTACTGGCAACACTTCTGCGGCGAG
GTGATCTTCCAGCACCGCCTGCCCATGGACGAAACCACCATGATGCGGTTCCGGCATCGCATCGGCGAAAACGGTGCTTGTGAGCTTCTGAAAATGAGCA
TCGCCCTGGGCCAGGATACTGGCGTCATCGCCCCGGAAAGCCTCAAGGTTGCCGTCATCGACACCACCGTCATGCCCAAGGCGATTGCCTATCCCAGCGA
CGCCCGCTTGGCGGGTCGTTGCCATCGCCAACTGGTGGCACTGGCCAAGGATGAAGGCATCAAATTCCGCCAGACCTTCTGCAAGGGGTTACCCGGCATG
GTCTGGCAGGTGGGCCGCTACGCTCATGCCCGGCAGTTCAAGCGGATGCACAAGGTACTGCGCCAGATGCACCGGAATCTGGGTAAGGTCTGTGAGGCCA
TTGTTGATCAGCGCACGATAGAACAACGTTCCGAGCGTCTGAACCACAAGCTCCACCAGGCACTGCGATTGCTGAATCAGTACGGCGACCGCACCGTCAA
ACCCCGGTTATACAGCCTGCACGAACCGGAGGTGGTGTGTATCGCCAAAGGCAAGGCTCGCACCCGCTATGAGTTCGGTTCCAAGGTCAGCGTGGTGACC
ACCGCCAAAGAGGGCTTCGTGTTGGATTGCCAGGCACTGGCTGGCAACCCCTACGATGGGCATACCGTCGATACGGCGCTCAAACGAGTGCTTCTGCATA
CCAGCAAGATGCCGGAGCATCTGCTGGCTGACCGTGGCTACCGTGGTAGCGAGGGCACATTCCTCTCCAAAATTCATATCACCGGCAAACGGAGAGGACG
CGGCAAGGCCCACCCCGATCAGCAACACCGGCGAAACAGTATCGAACCGATCATCGGACACCTGAAAAGTGACGGCCTGATGTTCCGGAACTTCCTCAGA
GGGTTTACGGGCGACAAGATACACGCGGTATTGTGCGGCGTGGGCCTGAACCTGAGGAAAGTTCTGAGGAAGCTCGCCGAGCTTCTTTGGCCTTATGAAA
ATGAGCGGTATTTACGACTGATGCTGGCTATTTTATGGTCAATTTTGGCGTTGCCGGATGAATCAACGAAGACCGGTGAATTGCTGGCGATCTGAAAACG
GCGTTTTGCAGGGTCGAC
GAAGAAAACGCCATGATTCCACGGGATAAGCGCCAGGCACCACAGCGAGATCTGTTGGAAACCTACCTCGAAGACATCCTCAATACCCGACACGAGTTGG
TGCAGCTGGGAAAGCGTATCGACTGGTCTGCCTGCGAACAGCACTTCGGCCAGTTGTATGCGGTGCAAGCCGGGCGTCCAGGGCTGCCCATCCGGTTACA
CGTGGGCTTACAGTTGCTCAAGCACATGTACGCGCTGTCCGATCGTGATGTGCTGGACCGCTGGGTAGAGAACCCCTACTGGCAACACTTCTGCGGCGAG
GTGATCTTCCAGCACCGCCTGCCCATGGACGAAACCACCATGATGCGGTTCCGGCATCGCATCGGCGAAAACGGTGCTTGTGAGCTTCTGAAAATGAGCA
TCGCCCTGGGCCAGGATACTGGCGTCATCGCCCCGGAAAGCCTCAAGGTTGCCGTCATCGACACCACCGTCATGCCCAAGGCGATTGCCTATCCCAGCGA
CGCCCGCTTGGCGGGTCGTTGCCATCGCCAACTGGTGGCACTGGCCAAGGATGAAGGCATCAAATTCCGCCAGACCTTCTGCAAGGGGTTACCCGGCATG
GTCTGGCAGGTGGGCCGCTACGCTCATGCCCGGCAGTTCAAGCGGATGCACAAGGTACTGCGCCAGATGCACCGGAATCTGGGTAAGGTCTGTGAGGCCA
TTGTTGATCAGCGCACGATAGAACAACGTTCCGAGCGTCTGAACCACAAGCTCCACCAGGCACTGCGATTGCTGAATCAGTACGGCGACCGCACCGTCAA
ACCCCGGTTATACAGCCTGCACGAACCGGAGGTGGTGTGTATCGCCAAAGGCAAGGCTCGCACCCGCTATGAGTTCGGTTCCAAGGTCAGCGTGGTGACC
ACCGCCAAAGAGGGCTTCGTGTTGGATTGCCAGGCACTGGCTGGCAACCCCTACGATGGGCATACCGTCGATACGGCGCTCAAACGAGTGCTTCTGCATA
CCAGCAAGATGCCGGAGCATCTGCTGGCTGACCGTGGCTACCGTGGTAGCGAGGGCACATTCCTCTCCAAAATTCATATCACCGGCAAACGGAGAGGACG
CGGCAAGGCCCACCCCGATCAGCAACACCGGCGAAACAGTATCGAACCGATCATCGGACACCTGAAAAGTGACGGCCTGATGTTCCGGAACTTCCTCAGA
GGGTTTACGGGCGACAAGATACACGCGGTATTGTGCGGCGTGGGCCTGAACCTGAGGAAAGTTCTGAGGAAGCTCGCCGAGCTTCTTTGGCCTTATGAAA
ATGAGCGGTATTTACGACTGATGCTGGCTATTTTATGGTCAATTTTGGCGTTGCCGGATGAATCAACGAAGACCGGTGAATTGCTGGCGATCTGAAAACG
GCGTTTTGCAGGGTCGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1383 bp | 460 aa | 113 | 1495 | + | No |
Chemistry : DDE
ORF sequence :
MIPRDKRQAPQRDLLETYLEDILNTRHELVQLGKRIDWSACEQHFGQLYAVQAGRPGLPIRLHVGLQLLKHMYALSDRDVLDRWVENPYWQHFCGEVIFQ
HRLPMDETTMMRFRHRIGENGACELLKMSIALGQDTGVIAPESLKVAVIDTTVMPKAIAYPSDARLAGRCHRQLVALAKDEGIKFRQTFCKGLPGMVWQV
GRYAHARQFKRMHKVLRQMHRNLGKVCEAIVDQRTIEQRSERLNHKLHQALRLLNQYGDRTVKPRLYSLHEPEVVCIAKGKARTRYEFGSKVSVVTTAKE
GFVLDCQALAGNPYDGHTVDTALKRVLLHTSKMPEHLLADRGYRGSEGTFLSKIHITGKRRGRGKAHPDQQHRRNSIEPIIGHLKSDGLMFRNFLRGFTG
DKIHAVLCGVGLNLRKVLRKLAELLWPYENERYLRLMLAILWSILALPDESTKTGELLAI
HRLPMDETTMMRFRHRIGENGACELLKMSIALGQDTGVIAPESLKVAVIDTTVMPKAIAYPSDARLAGRCHRQLVALAKDEGIKFRQTFCKGLPGMVWQV
GRYAHARQFKRMHKVLRQMHRNLGKVCEAIVDQRTIEQRSERLNHKLHQALRLLNQYGDRTVKPRLYSLHEPEVVCIAKGKARTRYEFGSKVSVVTTAKE
GFVLDCQALAGNPYDGHTVDTALKRVLLHTSKMPEHLLADRGYRGSEGTFLSKIHITGKRRGRGKAHPDQQHRRNSIEPIIGHLKSDGLMFRNFLRGFTG
DKIHAVLCGVGLNLRKVLRKLAELLWPYENERYLRLMLAILWSILALPDESTKTGELLAI
Blast result :
Comments
ISHsp1 has been identified by its integration to the entrapment vector pMAT1 (sacB cassette).
ISHsp1 is 97% aa similar to ISMaq6.
ISHsp1 is 97% aa similar to ISMaq6.
References
1]Dziewit, L., Pyzik, A., Matlakowska, R., Baj, J., Szuplewska, M., Bartosik, D. (2013) BMC Microbiol. 13, 59
2] Dziewit,L. and Bartosik,D. (2012) Direct submission GenBank.
2] Dziewit,L. and Bartosik,D. (2012) Direct submission GenBank.