ISHsp1

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JX569339 Y Halomonas sp.
Halomonas sp. ZM3
DNA section
IS Length : 1518 bp

Ends


IR Length : 15

IRL : GTCGACCCTGCAAAAGTAAAAACCTGAATCAAGGCAATAAGTTGGCCTGA
IRR : GTCGACCCTGCAAAACGCCGTTTTCAGATCGCCAGCAATTCACCGGTCTT

Insertion site


Left flankDirect repeatRight flankDR Length
AGGCCACAAATACTTAGTATTTGAAG6

DNA sequence

GTCGACCCTGCAAAAGTAAAAACCTGAATCAAGGCAATAAGTTGGCCTGATTTCAGGGTATAATTTCCACCATAAATCTCTCCGTTTCGCCCAAAAACCG
GAAGAAAACGCCATGATTCCACGGGATAAGCGCCAGGCACCACAGCGAGATCTGTTGGAAACCTACCTCGAAGACATCCTCAATACCCGACACGAGTTGG
TGCAGCTGGGAAAGCGTATCGACTGGTCTGCCTGCGAACAGCACTTCGGCCAGTTGTATGCGGTGCAAGCCGGGCGTCCAGGGCTGCCCATCCGGTTACA
CGTGGGCTTACAGTTGCTCAAGCACATGTACGCGCTGTCCGATCGTGATGTGCTGGACCGCTGGGTAGAGAACCCCTACTGGCAACACTTCTGCGGCGAG
GTGATCTTCCAGCACCGCCTGCCCATGGACGAAACCACCATGATGCGGTTCCGGCATCGCATCGGCGAAAACGGTGCTTGTGAGCTTCTGAAAATGAGCA
TCGCCCTGGGCCAGGATACTGGCGTCATCGCCCCGGAAAGCCTCAAGGTTGCCGTCATCGACACCACCGTCATGCCCAAGGCGATTGCCTATCCCAGCGA
CGCCCGCTTGGCGGGTCGTTGCCATCGCCAACTGGTGGCACTGGCCAAGGATGAAGGCATCAAATTCCGCCAGACCTTCTGCAAGGGGTTACCCGGCATG
GTCTGGCAGGTGGGCCGCTACGCTCATGCCCGGCAGTTCAAGCGGATGCACAAGGTACTGCGCCAGATGCACCGGAATCTGGGTAAGGTCTGTGAGGCCA
TTGTTGATCAGCGCACGATAGAACAACGTTCCGAGCGTCTGAACCACAAGCTCCACCAGGCACTGCGATTGCTGAATCAGTACGGCGACCGCACCGTCAA
ACCCCGGTTATACAGCCTGCACGAACCGGAGGTGGTGTGTATCGCCAAAGGCAAGGCTCGCACCCGCTATGAGTTCGGTTCCAAGGTCAGCGTGGTGACC
ACCGCCAAAGAGGGCTTCGTGTTGGATTGCCAGGCACTGGCTGGCAACCCCTACGATGGGCATACCGTCGATACGGCGCTCAAACGAGTGCTTCTGCATA
CCAGCAAGATGCCGGAGCATCTGCTGGCTGACCGTGGCTACCGTGGTAGCGAGGGCACATTCCTCTCCAAAATTCATATCACCGGCAAACGGAGAGGACG
CGGCAAGGCCCACCCCGATCAGCAACACCGGCGAAACAGTATCGAACCGATCATCGGACACCTGAAAAGTGACGGCCTGATGTTCCGGAACTTCCTCAGA
GGGTTTACGGGCGACAAGATACACGCGGTATTGTGCGGCGTGGGCCTGAACCTGAGGAAAGTTCTGAGGAAGCTCGCCGAGCTTCTTTGGCCTTATGAAA
ATGAGCGGTATTTACGACTGATGCTGGCTATTTTATGGTCAATTTTGGCGTTGCCGGATGAATCAACGAAGACCGGTGAATTGCTGGCGATCTGAAAACG
GCGTTTTGCAGGGTCGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1383 bp460 aa1131495+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MIPRDKRQAPQRDLLETYLEDILNTRHELVQLGKRIDWSACEQHFGQLYAVQAGRPGLPIRLHVGLQLLKHMYALSDRDVLDRWVENPYWQHFCGEVIFQ
HRLPMDETTMMRFRHRIGENGACELLKMSIALGQDTGVIAPESLKVAVIDTTVMPKAIAYPSDARLAGRCHRQLVALAKDEGIKFRQTFCKGLPGMVWQV
GRYAHARQFKRMHKVLRQMHRNLGKVCEAIVDQRTIEQRSERLNHKLHQALRLLNQYGDRTVKPRLYSLHEPEVVCIAKGKARTRYEFGSKVSVVTTAKE
GFVLDCQALAGNPYDGHTVDTALKRVLLHTSKMPEHLLADRGYRGSEGTFLSKIHITGKRRGRGKAHPDQQHRRNSIEPIIGHLKSDGLMFRNFLRGFTG
DKIHAVLCGVGLNLRKVLRKLAELLWPYENERYLRLMLAILWSILALPDESTKTGELLAI

 

Blast result :
Comments
ISHsp1 has been identified by its integration to the entrapment vector pMAT1 (sacB cassette).
ISHsp1 is 97% aa similar to ISMaq6.
References
1]Dziewit, L., Pyzik, A., Matlakowska, R., Baj, J., Szuplewska, M., Bartosik, D. (2013) BMC Microbiol. 13, 59
2] Dziewit,L. and Bartosik,D. (2012) Direct submission GenBank.