ISBsm1

  • Family IS701
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ACWF01000036 ND Bacillus smithii
Bacillus smithii 7_3_47FAA
DNA section
IS Length : 1363 bp

Ends


IR Length : 24/31

IRL : CTGTAGATGAGCAAAATCACTAACATAAATTTACATCGAAACAAAAAAGG
IRR : CTGTAGATGAGCAATTTTCATAACAATAATTACCATGTAAAAAGAAACAA

Insertion site


Left flankDirect repeatRight flankDR Length
CTTATTTTATTTACCAACCAAAG3

DNA sequence

CTGTAGATGAGCAAAATCACTAACATAAATTTACATCGAAACAAAAAAGGAGACATGAACCCGATTCCTTGGTTAGAATAGATGTGCTACCAAACCATTC
ACAAGGAGGTTCATGTCTCATGAATAGATTAGCACATCATCAAGGAATTCACAAGTTTTTCACGATGTTGGGGTTGACCCTTTATTTTTCAAAACCTGTT
ATGAAGCATCTCGTTCATATCGTGGATGCGATGATCACGAAGGGCTTTTCGGGAACATTGACCGATCTTCATCATGGGAGCTTTCATCCGAACCACCGCA
CGACACTCAGCCATTTTTTCACGAAAAGTCCGTGGGAGGAAGAGACACTGCTTCGCAAACTCCAGCAGTGGATCCTTCGTCGTGTCGAACGCATCGCCAA
ACAGGAGAATCAACCCTTGTTTGTTTCGATCGATGATACGATTTGCCAAAAAACCAAGCCTTCGTCACGGGCAACACACGCGATTCAGGGATGTGATTGG
CACTACTCTCACTCAGAGAAAAAATCGATTTGGGGCCATTCTCTTGTTTGGTTCATGGTTCATACTGCAACCCAGGCGTTTCCCTTTGCCTTCCGCCTCT
ACGACAAGACGGTGGGAAAAAGCAAAGGGGAACTCGCGATCGAGATGCTTTCTTCGTTGGATGTACGCCGTCCCGTTTATGTGCTGATGGATTCGTGGTA
TCCATCGAAAGCGCTCGTGGAAGCTTGTCTGAAAAAAGGATTCCACGTCATCGCGATGCTCAAGACGAACCGGATTCTCTATCCGAACGGCGTTGCCGTC
CAAGCGAAGCAGTTGGCCCGCTCCATCGAACCGAATGACACTCACCTCGTCACGGTGGGAGAAGAGCATTATCGCGTCTATCGTTACGAAGGAGCGCTCA
ACGGTCTCGACCATGCGGTGGTGCTGCTCGCTTGGAAAGCCAATCAGCCGATGACATCGGAACATCTTCACTGCGTCTTGAGCACCGACCGGGAGCTAAG
CGATGAAGACATCTTGCGCCACTATGCCCAACGCTGGTCGATCGAATGCTTTTTTCGACAAGCGAAAGACCAGCTGAAGCTCGATGGGTACCGTGTTCGT
CAGGTTCGGGCGGTGAAACGCTACTGGATCTTGGTGCAGCTTGCTTACGTATACAGTCTATTCGAGTCGAACAGCGATTTTTCTGATGGGCTCGATCTCT
TGCGCAAGAGAAAAGGACATAGCCTCGTGGAGTTCATTTACTGTGCAGCGAAACAAAATATTCCCATTGATACCGTGAAAAAACAGCTCCATGTGGCATA
AGGGGTACCTTGTTTGTTTCTTTTTACATGGTAATTATTGTTATGAAAATTGCTCATCTACAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1182 bp393 aa1201301+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNRLAHHQGIHKFFTMLGLTLYFSKPVMKHLVHIVDAMITKGFSGTLTDLHHGSFHPNHRTTLSHFFTKSPWEEETLLRKLQQWILRRVERIAKQENQPL
FVSIDDTICQKTKPSSRATHAIQGCDWHYSHSEKKSIWGHSLVWFMVHTATQAFPFAFRLYDKTVGKSKGELAIEMLSSLDVRRPVYVLMDSWYPSKALV
EACLKKGFHVIAMLKTNRILYPNGVAVQAKQLARSIEPNDTHLVTVGEEHYRVYRYEGALNGLDHAVVLLAWKANQPMTSEHLHCVLSTDRELSDEDILR
HYAQRWSIECFFRQAKDQLKLDGYRVRQVRAVKRYWILVQLAYVYSLFESNSDFSDGLDLLRKRKGHSLVEFIYCAAKQNIPIDTVKKQLHVA

 

Blast result :
Comments
ISBsm1 is 52% aa similar to ISCth16.
References
1] ISfinder submission (2012)
2] Earl,A., Ward,D., Feldgarden,M., Gevers,D., Daigneault,M., Strauss,J., Allen-Vercoe,E., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L., Arachchi,H.M., Berlin,A., Brown,A., Chapman,S.B., Chen,Z., Dunbar,C., Freedman,E., Gearin,G., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Howarth,C., Larson,L., Lui,A., MacDonald,P.J.P., Montmayeur,A., Murphy,C., Neiman,D., Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Wortman,J., Nusbaum,C. and Birren,B. (2011) Direct submission GenBank.