ISBsm1
- Family IS701
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ACWF01000036 | ND | Bacillus smithii | Bacillus smithii 7_3_47FAA |
DNA section
IS Length : 1363 bp
Ends
IR Length : 24/31
IRL : CTGTAGATGAGCAAAATCACTAACATAAATTTACATCGAAACAAAAAAGG
IRR : CTGTAGATGAGCAATTTTCATAACAATAATTACCATGTAAAAAGAAACAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTTATTTTAT | TTA | CCAACCAAAG | 3 |
DNA sequence
CTGTAGATGAGCAAAATCACTAACATAAATTTACATCGAAACAAAAAAGGAGACATGAACCCGATTCCTTGGTTAGAATAGATGTGCTACCAAACCATTC
ACAAGGAGGTTCATGTCTCATGAATAGATTAGCACATCATCAAGGAATTCACAAGTTTTTCACGATGTTGGGGTTGACCCTTTATTTTTCAAAACCTGTT
ATGAAGCATCTCGTTCATATCGTGGATGCGATGATCACGAAGGGCTTTTCGGGAACATTGACCGATCTTCATCATGGGAGCTTTCATCCGAACCACCGCA
CGACACTCAGCCATTTTTTCACGAAAAGTCCGTGGGAGGAAGAGACACTGCTTCGCAAACTCCAGCAGTGGATCCTTCGTCGTGTCGAACGCATCGCCAA
ACAGGAGAATCAACCCTTGTTTGTTTCGATCGATGATACGATTTGCCAAAAAACCAAGCCTTCGTCACGGGCAACACACGCGATTCAGGGATGTGATTGG
CACTACTCTCACTCAGAGAAAAAATCGATTTGGGGCCATTCTCTTGTTTGGTTCATGGTTCATACTGCAACCCAGGCGTTTCCCTTTGCCTTCCGCCTCT
ACGACAAGACGGTGGGAAAAAGCAAAGGGGAACTCGCGATCGAGATGCTTTCTTCGTTGGATGTACGCCGTCCCGTTTATGTGCTGATGGATTCGTGGTA
TCCATCGAAAGCGCTCGTGGAAGCTTGTCTGAAAAAAGGATTCCACGTCATCGCGATGCTCAAGACGAACCGGATTCTCTATCCGAACGGCGTTGCCGTC
CAAGCGAAGCAGTTGGCCCGCTCCATCGAACCGAATGACACTCACCTCGTCACGGTGGGAGAAGAGCATTATCGCGTCTATCGTTACGAAGGAGCGCTCA
ACGGTCTCGACCATGCGGTGGTGCTGCTCGCTTGGAAAGCCAATCAGCCGATGACATCGGAACATCTTCACTGCGTCTTGAGCACCGACCGGGAGCTAAG
CGATGAAGACATCTTGCGCCACTATGCCCAACGCTGGTCGATCGAATGCTTTTTTCGACAAGCGAAAGACCAGCTGAAGCTCGATGGGTACCGTGTTCGT
CAGGTTCGGGCGGTGAAACGCTACTGGATCTTGGTGCAGCTTGCTTACGTATACAGTCTATTCGAGTCGAACAGCGATTTTTCTGATGGGCTCGATCTCT
TGCGCAAGAGAAAAGGACATAGCCTCGTGGAGTTCATTTACTGTGCAGCGAAACAAAATATTCCCATTGATACCGTGAAAAAACAGCTCCATGTGGCATA
AGGGGTACCTTGTTTGTTTCTTTTTACATGGTAATTATTGTTATGAAAATTGCTCATCTACAG
ACAAGGAGGTTCATGTCTCATGAATAGATTAGCACATCATCAAGGAATTCACAAGTTTTTCACGATGTTGGGGTTGACCCTTTATTTTTCAAAACCTGTT
ATGAAGCATCTCGTTCATATCGTGGATGCGATGATCACGAAGGGCTTTTCGGGAACATTGACCGATCTTCATCATGGGAGCTTTCATCCGAACCACCGCA
CGACACTCAGCCATTTTTTCACGAAAAGTCCGTGGGAGGAAGAGACACTGCTTCGCAAACTCCAGCAGTGGATCCTTCGTCGTGTCGAACGCATCGCCAA
ACAGGAGAATCAACCCTTGTTTGTTTCGATCGATGATACGATTTGCCAAAAAACCAAGCCTTCGTCACGGGCAACACACGCGATTCAGGGATGTGATTGG
CACTACTCTCACTCAGAGAAAAAATCGATTTGGGGCCATTCTCTTGTTTGGTTCATGGTTCATACTGCAACCCAGGCGTTTCCCTTTGCCTTCCGCCTCT
ACGACAAGACGGTGGGAAAAAGCAAAGGGGAACTCGCGATCGAGATGCTTTCTTCGTTGGATGTACGCCGTCCCGTTTATGTGCTGATGGATTCGTGGTA
TCCATCGAAAGCGCTCGTGGAAGCTTGTCTGAAAAAAGGATTCCACGTCATCGCGATGCTCAAGACGAACCGGATTCTCTATCCGAACGGCGTTGCCGTC
CAAGCGAAGCAGTTGGCCCGCTCCATCGAACCGAATGACACTCACCTCGTCACGGTGGGAGAAGAGCATTATCGCGTCTATCGTTACGAAGGAGCGCTCA
ACGGTCTCGACCATGCGGTGGTGCTGCTCGCTTGGAAAGCCAATCAGCCGATGACATCGGAACATCTTCACTGCGTCTTGAGCACCGACCGGGAGCTAAG
CGATGAAGACATCTTGCGCCACTATGCCCAACGCTGGTCGATCGAATGCTTTTTTCGACAAGCGAAAGACCAGCTGAAGCTCGATGGGTACCGTGTTCGT
CAGGTTCGGGCGGTGAAACGCTACTGGATCTTGGTGCAGCTTGCTTACGTATACAGTCTATTCGAGTCGAACAGCGATTTTTCTGATGGGCTCGATCTCT
TGCGCAAGAGAAAAGGACATAGCCTCGTGGAGTTCATTTACTGTGCAGCGAAACAAAATATTCCCATTGATACCGTGAAAAAACAGCTCCATGTGGCATA
AGGGGTACCTTGTTTGTTTCTTTTTACATGGTAATTATTGTTATGAAAATTGCTCATCTACAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1182 bp | 393 aa | 120 | 1301 | + | No |
Chemistry : DDE
ORF sequence :
MNRLAHHQGIHKFFTMLGLTLYFSKPVMKHLVHIVDAMITKGFSGTLTDLHHGSFHPNHRTTLSHFFTKSPWEEETLLRKLQQWILRRVERIAKQENQPL
FVSIDDTICQKTKPSSRATHAIQGCDWHYSHSEKKSIWGHSLVWFMVHTATQAFPFAFRLYDKTVGKSKGELAIEMLSSLDVRRPVYVLMDSWYPSKALV
EACLKKGFHVIAMLKTNRILYPNGVAVQAKQLARSIEPNDTHLVTVGEEHYRVYRYEGALNGLDHAVVLLAWKANQPMTSEHLHCVLSTDRELSDEDILR
HYAQRWSIECFFRQAKDQLKLDGYRVRQVRAVKRYWILVQLAYVYSLFESNSDFSDGLDLLRKRKGHSLVEFIYCAAKQNIPIDTVKKQLHVA
FVSIDDTICQKTKPSSRATHAIQGCDWHYSHSEKKSIWGHSLVWFMVHTATQAFPFAFRLYDKTVGKSKGELAIEMLSSLDVRRPVYVLMDSWYPSKALV
EACLKKGFHVIAMLKTNRILYPNGVAVQAKQLARSIEPNDTHLVTVGEEHYRVYRYEGALNGLDHAVVLLAWKANQPMTSEHLHCVLSTDRELSDEDILR
HYAQRWSIECFFRQAKDQLKLDGYRVRQVRAVKRYWILVQLAYVYSLFESNSDFSDGLDLLRKRKGHSLVEFIYCAAKQNIPIDTVKKQLHVA
Blast result :
Comments
ISBsm1 is 52% aa similar to ISCth16.
References
1] ISfinder submission (2012)
2] Earl,A., Ward,D., Feldgarden,M., Gevers,D., Daigneault,M., Strauss,J., Allen-Vercoe,E., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L., Arachchi,H.M., Berlin,A., Brown,A., Chapman,S.B., Chen,Z., Dunbar,C., Freedman,E., Gearin,G., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Howarth,C., Larson,L., Lui,A., MacDonald,P.J.P., Montmayeur,A., Murphy,C., Neiman,D., Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Wortman,J., Nusbaum,C. and Birren,B. (2011) Direct submission GenBank.
2] Earl,A., Ward,D., Feldgarden,M., Gevers,D., Daigneault,M., Strauss,J., Allen-Vercoe,E., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L., Arachchi,H.M., Berlin,A., Brown,A., Chapman,S.B., Chen,Z., Dunbar,C., Freedman,E., Gearin,G., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Howarth,C., Larson,L., Lui,A., MacDonald,P.J.P., Montmayeur,A., Murphy,C., Neiman,D., Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Wortman,J., Nusbaum,C. and Birren,B. (2011) Direct submission GenBank.