ISSsp126

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AJ277295 ND Sphingomonas sp.
Sphingomonas sp. LB126
DNA section
IS Length : 1293 bp

Ends


IR Length : 20

IRL : TGGACACCTCGAAAAACCGGTGGCGTCTGACGGCTTGAGGTGATTCACTG
IRR : TGGACACCTCGAAAAACCGGGTGATTTTGGTCTGATGGCGTAGGAAGGGG

Insertion site


Left flankDirect repeatRight flankDR Length
GGCGCATGCACATGGCCGATCT2

DNA sequence

TGGACACCTCGAAAAACCGGTGGCGTCTGACGGCTTGAGGTGATTCACTGCGCGTACGCGACAGCGGAGGCAGAGATGGCAGTACAGCCGGGTTTCTTTG
ATCTTTCGGACCGATACGAGGCGCTGAGCGCGGCGGGCGATCCCCTGGAACGGTTGTCCGCCGTGGTGGACTTGCAGCTATTCCGGGGACCGCTGGTGGC
CGCGCTGCGACGCGGCCCTCGTAACAAGGGCGGACGACCGCCGTTCGATCCGGTGCTGATGTTCAAAATCCTGGTTCTACAGGCATTGTATTCGCTGTCC
GACGAGGCGACCGAGTTCCAGATCAAGGACCGGCTTTCGTTTCAGCGCTTCCTGGGCGTTGGCCTGGAAGGCACCGTGCCCGATGCCACCACGGTCTGGC
TGTTCCGCGAACGGCTTGTGAAGGCCAAAGCAATCGACCGGCTGTTCGTGCGCTTCGATACCGCTCTCAAGGATCGGGGCTATCTGGCCATGGGCGGGCA
GATCATCGACGCTACCGTCGTGCCCGCGCCCAAGCAACGCAATACTCAGGAGGAGAAGGCGGCGATCAAGGAAGGCCGGATCCCTCAGGACTGGAACCCC
GCCAAGACCCGACAGAAAGACCGCGATGCGCGCTGGTCGATCAAATATACCAAAGCCAAGGTCAGGGAAGGCGACGATCCTAAGGCGACAAAGCCGGTCG
ATCTGGCCATCCCGATGTTCGGCTATAAAAACCATATCGGCATCGATCGGGTCCACGGACTGATCCGCACCTGGGATGCGAGCGCCGCCAATGCCCATGA
TGGCGCGCGACTGCCCGATCTGATCAGCAAGGAGAACACCGCCTCAGGCGTTTGGGCCGATACCGCCTATCGATCCAAGAAGAACGAGGCGTTTCTCGCC
AGGGGCATGTTCACCAGCAATATCCACCAGAAGCGCCTGCCCAAGCGGCCGCTGCCCGAACGGATAGCCAGGGCCAATGCAAGGCGCTCAAAGGTCCGCG
CCGCCGTGGAGCATGTCTTTGCCGGGCAGAAACACCGCATGGGCCTCGTCGTCCGCACCATCGGCATCGCTCGCGCCAGGATCAAGATCGGCATGGCCAA
CCTGGTCTATAATTTCCAGCGTCTCGCCTGGATCGAGGGCAGAGCTGCGCCTGCATGACATGGAATTGGCGCCCAGAACTCCGCCGACACGGCGATCACC
CCGCCAATGCCGCCGAAGCGGTGCCTTTCATCAGCGCCGCGTGCCCCTTCCTACGCCATCAGACCAAAATCACCCGGTTTTTCGAGGTGTCCA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1083 bp360 aa761158+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAVQPGFFDLSDRYEALSAAGDPLERLSAVVDLQLFRGPLVAALRRGPRNKGGRPPFDPVLMFKILVLQALYSLSDEATEFQIKDRLSFQRFLGVGLEGT
VPDATTVWLFRERLVKAKAIDRLFVRFDTALKDRGYLAMGGQIIDATVVPAPKQRNTQEEKAAIKEGRIPQDWNPAKTRQKDRDARWSIKYTKAKVREGD
DPKATKPVDLAIPMFGYKNHIGIDRVHGLIRTWDASAANAHDGARLPDLISKENTASGVWADTAYRSKKNEAFLARGMFTSNIHQKRLPKRPLPERIARA
NARRSKVRAAVEHVFAGQKHRMGLVVRTIGIARARIKIGMANLVYNFQRLAWIEGRAAPA

 

Blast result :
Comments
ISSsp126 is 54% aa similar to the IS1158.
References
1]Wattiau,P., Bastiaens,L., van Herwijnen,R., Daal,L., Parsons,J.R., Renard,M.E., Springael,D. and Cornelis,G.R. (2001) Res. Microbiol. 152 (10), 861-872