ISSsp126
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AJ277295 | ND | Sphingomonas sp. | Sphingomonas sp. LB126 |
DNA section
IS Length : 1293 bp
Ends
IR Length : 20
IRL : TGGACACCTCGAAAAACCGGTGGCGTCTGACGGCTTGAGGTGATTCACTG
IRR : TGGACACCTCGAAAAACCGGGTGATTTTGGTCTGATGGCGTAGGAAGGGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCGCATGCA | CA | TGGCCGATCT | 2 |
DNA sequence
TGGACACCTCGAAAAACCGGTGGCGTCTGACGGCTTGAGGTGATTCACTGCGCGTACGCGACAGCGGAGGCAGAGATGGCAGTACAGCCGGGTTTCTTTG
ATCTTTCGGACCGATACGAGGCGCTGAGCGCGGCGGGCGATCCCCTGGAACGGTTGTCCGCCGTGGTGGACTTGCAGCTATTCCGGGGACCGCTGGTGGC
CGCGCTGCGACGCGGCCCTCGTAACAAGGGCGGACGACCGCCGTTCGATCCGGTGCTGATGTTCAAAATCCTGGTTCTACAGGCATTGTATTCGCTGTCC
GACGAGGCGACCGAGTTCCAGATCAAGGACCGGCTTTCGTTTCAGCGCTTCCTGGGCGTTGGCCTGGAAGGCACCGTGCCCGATGCCACCACGGTCTGGC
TGTTCCGCGAACGGCTTGTGAAGGCCAAAGCAATCGACCGGCTGTTCGTGCGCTTCGATACCGCTCTCAAGGATCGGGGCTATCTGGCCATGGGCGGGCA
GATCATCGACGCTACCGTCGTGCCCGCGCCCAAGCAACGCAATACTCAGGAGGAGAAGGCGGCGATCAAGGAAGGCCGGATCCCTCAGGACTGGAACCCC
GCCAAGACCCGACAGAAAGACCGCGATGCGCGCTGGTCGATCAAATATACCAAAGCCAAGGTCAGGGAAGGCGACGATCCTAAGGCGACAAAGCCGGTCG
ATCTGGCCATCCCGATGTTCGGCTATAAAAACCATATCGGCATCGATCGGGTCCACGGACTGATCCGCACCTGGGATGCGAGCGCCGCCAATGCCCATGA
TGGCGCGCGACTGCCCGATCTGATCAGCAAGGAGAACACCGCCTCAGGCGTTTGGGCCGATACCGCCTATCGATCCAAGAAGAACGAGGCGTTTCTCGCC
AGGGGCATGTTCACCAGCAATATCCACCAGAAGCGCCTGCCCAAGCGGCCGCTGCCCGAACGGATAGCCAGGGCCAATGCAAGGCGCTCAAAGGTCCGCG
CCGCCGTGGAGCATGTCTTTGCCGGGCAGAAACACCGCATGGGCCTCGTCGTCCGCACCATCGGCATCGCTCGCGCCAGGATCAAGATCGGCATGGCCAA
CCTGGTCTATAATTTCCAGCGTCTCGCCTGGATCGAGGGCAGAGCTGCGCCTGCATGACATGGAATTGGCGCCCAGAACTCCGCCGACACGGCGATCACC
CCGCCAATGCCGCCGAAGCGGTGCCTTTCATCAGCGCCGCGTGCCCCTTCCTACGCCATCAGACCAAAATCACCCGGTTTTTCGAGGTGTCCA
ATCTTTCGGACCGATACGAGGCGCTGAGCGCGGCGGGCGATCCCCTGGAACGGTTGTCCGCCGTGGTGGACTTGCAGCTATTCCGGGGACCGCTGGTGGC
CGCGCTGCGACGCGGCCCTCGTAACAAGGGCGGACGACCGCCGTTCGATCCGGTGCTGATGTTCAAAATCCTGGTTCTACAGGCATTGTATTCGCTGTCC
GACGAGGCGACCGAGTTCCAGATCAAGGACCGGCTTTCGTTTCAGCGCTTCCTGGGCGTTGGCCTGGAAGGCACCGTGCCCGATGCCACCACGGTCTGGC
TGTTCCGCGAACGGCTTGTGAAGGCCAAAGCAATCGACCGGCTGTTCGTGCGCTTCGATACCGCTCTCAAGGATCGGGGCTATCTGGCCATGGGCGGGCA
GATCATCGACGCTACCGTCGTGCCCGCGCCCAAGCAACGCAATACTCAGGAGGAGAAGGCGGCGATCAAGGAAGGCCGGATCCCTCAGGACTGGAACCCC
GCCAAGACCCGACAGAAAGACCGCGATGCGCGCTGGTCGATCAAATATACCAAAGCCAAGGTCAGGGAAGGCGACGATCCTAAGGCGACAAAGCCGGTCG
ATCTGGCCATCCCGATGTTCGGCTATAAAAACCATATCGGCATCGATCGGGTCCACGGACTGATCCGCACCTGGGATGCGAGCGCCGCCAATGCCCATGA
TGGCGCGCGACTGCCCGATCTGATCAGCAAGGAGAACACCGCCTCAGGCGTTTGGGCCGATACCGCCTATCGATCCAAGAAGAACGAGGCGTTTCTCGCC
AGGGGCATGTTCACCAGCAATATCCACCAGAAGCGCCTGCCCAAGCGGCCGCTGCCCGAACGGATAGCCAGGGCCAATGCAAGGCGCTCAAAGGTCCGCG
CCGCCGTGGAGCATGTCTTTGCCGGGCAGAAACACCGCATGGGCCTCGTCGTCCGCACCATCGGCATCGCTCGCGCCAGGATCAAGATCGGCATGGCCAA
CCTGGTCTATAATTTCCAGCGTCTCGCCTGGATCGAGGGCAGAGCTGCGCCTGCATGACATGGAATTGGCGCCCAGAACTCCGCCGACACGGCGATCACC
CCGCCAATGCCGCCGAAGCGGTGCCTTTCATCAGCGCCGCGTGCCCCTTCCTACGCCATCAGACCAAAATCACCCGGTTTTTCGAGGTGTCCA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1083 bp | 360 aa | 76 | 1158 | + | No |
Chemistry : DDE
ORF sequence :
MAVQPGFFDLSDRYEALSAAGDPLERLSAVVDLQLFRGPLVAALRRGPRNKGGRPPFDPVLMFKILVLQALYSLSDEATEFQIKDRLSFQRFLGVGLEGT
VPDATTVWLFRERLVKAKAIDRLFVRFDTALKDRGYLAMGGQIIDATVVPAPKQRNTQEEKAAIKEGRIPQDWNPAKTRQKDRDARWSIKYTKAKVREGD
DPKATKPVDLAIPMFGYKNHIGIDRVHGLIRTWDASAANAHDGARLPDLISKENTASGVWADTAYRSKKNEAFLARGMFTSNIHQKRLPKRPLPERIARA
NARRSKVRAAVEHVFAGQKHRMGLVVRTIGIARARIKIGMANLVYNFQRLAWIEGRAAPA
VPDATTVWLFRERLVKAKAIDRLFVRFDTALKDRGYLAMGGQIIDATVVPAPKQRNTQEEKAAIKEGRIPQDWNPAKTRQKDRDARWSIKYTKAKVREGD
DPKATKPVDLAIPMFGYKNHIGIDRVHGLIRTWDASAANAHDGARLPDLISKENTASGVWADTAYRSKKNEAFLARGMFTSNIHQKRLPKRPLPERIARA
NARRSKVRAAVEHVFAGQKHRMGLVVRTIGIARARIKIGMANLVYNFQRLAWIEGRAAPA
Blast result :
Comments
ISSsp126 is 54% aa similar to the IS1158.
References
1]Wattiau,P., Bastiaens,L., van Herwijnen,R., Daal,L., Parsons,J.R., Renard,M.E., Springael,D. and Cornelis,G.R. (2001) Res. Microbiol. 152 (10), 861-872