ISSfl7
- Family IS5
- Group IS427
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Shigella flexneri | Shigella flexneri |
DNA section
IS Length : 916 bp
Ends
IR Length : 16
IRL : GGCTGTGTCCCTTAATCATCTGAGTTATAGTAACTGTCTGTTTACACAAC
IRR : GGCTGTGTCCCTTAATTACGTAAGCGTTGATAAAAGAGTCGGATGCAGCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNNNNNAC | TA | GTNNNNNNNN | 2 |
DNA sequence
GGCTGTGTCCCTTAATCATCTGAGTTATAGTAACTGTCTGTTTACACAACATATTGAACTATGGCTCGCTACGACCTTCCCGATGAGGCATGGACCATCA
TCAAGCCCCTGTTACCTCCTGAACCCGCCACACCACGGGCCGGACGCCCATGGGCTGAGCACCGTAAAATCATCAATGGCATGTTCTGGGTGTTATGTTC
CGGTGCACCATGGCGCGATTTACCCGAACGATATGGGGCATGGAAAACTGTTTATAACCGCTTTAACCGATGGTCAAAGTCAGGCGTGATTAATATTATT
TTCAACAGGTTGCTTTCGCTACTTGATGCAAACGGCTTTATTGACTGGTCTGCCACCGCGCTGGATGGCAGTAATATCCGGGCGCTGAAATGTGCCGCCG
GTACTCAAAAAAACATCCCGATATCGACGGAGATAATGGGCCGGGTCGCTCTCGCGGCGGTTTTGGCACCAAAATCCATCTGGCAACAGACGGAAGTGGC
CTCCCGTTAAATATCGTGCTAAGCCCCGGACAAGCTCATGAAAGCCAGTTCGCGCAACGACTTCTGGACGGGATTGGCGTTCAGCGTCAGAACGGCAGCA
TGAAACGCCGTGGACATGCGGTACTGGCTGATAAAGCGTATTCAGGGCGCGCATTGCGCAATGAGCTGAAAAATAACGGTATAAAGGCAGTAATCCCCCG
AAAGTCAAATGAGAAAATGGCATCGGATGGACGTGCACAGCTTGATCGTGATGCGTACTGCAATCGTAATGTCGTTGAACGGTGCTTTGGGCGGCTGAAA
GAATATCGCCGCATCGCCACGCGTTACGACAAAACGGCGAGAAATTACCTGGCGATAGTGAAACTGGGCTGCATCCGACTCTTTTATCAACGCTTACGTA
ATTAAGGGACACAGCC
TCAAGCCCCTGTTACCTCCTGAACCCGCCACACCACGGGCCGGACGCCCATGGGCTGAGCACCGTAAAATCATCAATGGCATGTTCTGGGTGTTATGTTC
CGGTGCACCATGGCGCGATTTACCCGAACGATATGGGGCATGGAAAACTGTTTATAACCGCTTTAACCGATGGTCAAAGTCAGGCGTGATTAATATTATT
TTCAACAGGTTGCTTTCGCTACTTGATGCAAACGGCTTTATTGACTGGTCTGCCACCGCGCTGGATGGCAGTAATATCCGGGCGCTGAAATGTGCCGCCG
GTACTCAAAAAAACATCCCGATATCGACGGAGATAATGGGCCGGGTCGCTCTCGCGGCGGTTTTGGCACCAAAATCCATCTGGCAACAGACGGAAGTGGC
CTCCCGTTAAATATCGTGCTAAGCCCCGGACAAGCTCATGAAAGCCAGTTCGCGCAACGACTTCTGGACGGGATTGGCGTTCAGCGTCAGAACGGCAGCA
TGAAACGCCGTGGACATGCGGTACTGGCTGATAAAGCGTATTCAGGGCGCGCATTGCGCAATGAGCTGAAAAATAACGGTATAAAGGCAGTAATCCCCCG
AAAGTCAAATGAGAAAATGGCATCGGATGGACGTGCACAGCTTGATCGTGATGCGTACTGCAATCGTAATGTCGTTGAACGGTGCTTTGGGCGGCTGAAA
GAATATCGCCGCATCGCCACGCGTTACGACAAAACGGCGAGAAATTACCTGGCGATAGTGAAACTGGGCTGCATCCGACTCTTTTATCAACGCTTACGTA
ATTAAGGGACACAGCC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
450 bp | 149 aa | 61 | 510 | + | No |
Description : First part of the transposase
ORF sequence :
MARYDLPDEAWTIIKPLLPPEPATPRAGRPWAEHRKIINGMFWVLCSGAPWRDLPERYGAWKTVYNRFNRWSKSGVINIIFNRLLSLLDANGFIDWSATA
LDGSNIRALKCAAGTQKNIPISTEIMGRVALAAVLAPKSIWQQTEVASR
LDGSNIRALKCAAGTQKNIPISTEIMGRVALAAVLAPKSIWQQTEVASR
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
531 bp | 176 aa | 375 | 905 | + | No |
Description : Second part of the transposase
ORF sequence :
YPGAEMCRRYSKKHPDIDGDNGPGRSRGGFGTKIHLATDGSGLPLNIVLSPGQAHESQFAQRLLDGIGVQRQNGSMKRRGHAVLADKAYSGRALRNELKN
NGIKAVIPRKSNEKMASDGRAQLDRDAYCNRNVVERCFGRLKEYRRIATRYDKTARNYLAIVKLGCIRLFYQRLRN
NGIKAVIPRKSNEKMASDGRAQLDRDAYCNRNVVERCFGRLKEYRRIATRYDKTARNYLAIVKLGCIRLFYQRLRN
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
845 bp | 281 aa | 61 | 905 | + | Yes |
Chemistry : DDE
ORF sequence :
MARYDLPDEAWTIIKPLLPPEPATPRAGRPWAEHRKIINGMFWVLCSGAPWRDLPERYGAWKTVYNRFNRWSKSGVINIIFNRLLSLLDANGFIDWSATA
LDGSNIRALKCAAGTQKKHPDIDGDNGPGRSRGGFGTKIHLATDGSGLPLNIVLSPGQAHESQFAQRLLDGIGVQRQNGSMKRRGHAVLADKAYSGRALR
NELKNNGIKAVIPRKSNEKMASDGRAQLDRDAYCNRNVVERCFGRLKEYRRIATRYDKTARNYLAIVKLGCIRLFYQRLRN
LDGSNIRALKCAAGTQKKHPDIDGDNGPGRSRGGFGTKIHLATDGSGLPLNIVLSPGQAHESQFAQRLLDGIGVQRQNGSMKRRGHAVLADKAYSGRALR
NELKNNGIKAVIPRKSNEKMASDGRAQLDRDAYCNRNVVERCFGRLKEYRRIATRYDKTARNYLAIVKLGCIRLFYQRLRN
Blast result :
Comments
ISSfl7 is 94% aa similar to ISEhe2.
The third ORF is a putative ORFAB transposase reconstructed in silico by a possible -1 frameshift.
File updated: July 10 2012.
The third ORF is a putative ORFAB transposase reconstructed in silico by a possible -1 frameshift.
File updated: July 10 2012.
References
1] Parsot. (1999) Direct submission.