ISSf1
- Family IS5
- Group IS1031
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
X07848 [P] | ND | Shigella flexneri | Shigella flexneri plasmid pR387 |
DNA section
IS Length : 257 bp
Ends
IR Length :
IRL : --------------------------------------------------
IRR : --------------------------------------------------
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GATCGTATCTGAGAAGTCGTCGCTATGAGCCTCATGTCCAGTCACGGAAGGATGAATCAGAAGCCATCAAAAACACGGATTTTAAGGCCCACCGCTGGGT
TGTAGAGAGAACACACAGTTGGATGAATCGCTACCGTCGTGTCCTGACTCGTTGGGAGAAAAAGGTCGAAAATTACGAGGCAATGCTGCATCTTGCCTGT
GCCATCATTGTCTGGAATAAAATCCTTTTGGGATAGGTTCTTAGTAAATAAAAATTCAGAAGGGATATGTTATGAACTATACAAAATTTGATGTAAAAAA
TTGGGTTCGCCGTGAGCATTTTGAGTTTTATCGGCATCGTTTACCATGTGGTTTTAGCTTAACAAGCAAAATTGATATCACGACGTTAAAAAAGTCATTG
GATGATTCAGCGTATAAGTTTTATCCGGTAATGATCTATCTGATTGCTCAGGCCGTGAATCAATTTGATGAGTTGAGAATGGCGATAAAAGATGATGAAT
TGATCGTATGGGATTCAGTCGACCCACAATTCACCGTATTCCATCAAGAAACAGAGACATTTTCAGCACTGAGTTGCCCATACTCATCCGATATTGATCA
ATTTATGGTGAATTATTTATCGGTAATGGAACGTTATAAAAGTGATACCAAGTTATTTCCTCAAGGGGTAACACCAGAAAATCATTTAAATATTTCAGCA
TTACCTTGGGTTAATTTTGATAGCTTTAATTTAAATGTTGCTAATTTTACCGATTATTTTGCACCCATTATAACAATGGCAAAATATCAGCAAGAAGGGG
ATAGACTGTTATTGCCGCTCTCAGTACAGGTTCATCATGCAGTTTGTGATGGCTTCCATGTTGCACGCTTTATTAATCGGCTACAAGAGTTGTGTAACAG
TAAATTAAAATAAGCTCAGGTTAAATTAAAGGGTTTCATATCTAGTGAAGCCCTGTTTTATTATGTTTTGAGTTAACTTATCTTCAATGGCGGTCATAGA
ACCGACTGTTTACCCTCAAATAAATGTGTGAGCCGAATTATTATATCATCCTTCCGCAAAAGGCTAAAAACCATAAACAATAAAATGTTTTTTGTCGGCT
TTTCTTCGCACTTTTTATCTGTTTCTAGGCATTTTATGATAATTTTTTAAAGGTAAGCTT
TGTAGAGAGAACACACAGTTGGATGAATCGCTACCGTCGTGTCCTGACTCGTTGGGAGAAAAAGGTCGAAAATTACGAGGCAATGCTGCATCTTGCCTGT
GCCATCATTGTCTGGAATAAAATCCTTTTGGGATAGGTTCTTAGTAAATAAAAATTCAGAAGGGATATGTTATGAACTATACAAAATTTGATGTAAAAAA
TTGGGTTCGCCGTGAGCATTTTGAGTTTTATCGGCATCGTTTACCATGTGGTTTTAGCTTAACAAGCAAAATTGATATCACGACGTTAAAAAAGTCATTG
GATGATTCAGCGTATAAGTTTTATCCGGTAATGATCTATCTGATTGCTCAGGCCGTGAATCAATTTGATGAGTTGAGAATGGCGATAAAAGATGATGAAT
TGATCGTATGGGATTCAGTCGACCCACAATTCACCGTATTCCATCAAGAAACAGAGACATTTTCAGCACTGAGTTGCCCATACTCATCCGATATTGATCA
ATTTATGGTGAATTATTTATCGGTAATGGAACGTTATAAAAGTGATACCAAGTTATTTCCTCAAGGGGTAACACCAGAAAATCATTTAAATATTTCAGCA
TTACCTTGGGTTAATTTTGATAGCTTTAATTTAAATGTTGCTAATTTTACCGATTATTTTGCACCCATTATAACAATGGCAAAATATCAGCAAGAAGGGG
ATAGACTGTTATTGCCGCTCTCAGTACAGGTTCATCATGCAGTTTGTGATGGCTTCCATGTTGCACGCTTTATTAATCGGCTACAAGAGTTGTGTAACAG
TAAATTAAAATAAGCTCAGGTTAAATTAAAGGGTTTCATATCTAGTGAAGCCCTGTTTTATTATGTTTTGAGTTAACTTATCTTCAATGGCGGTCATAGA
ACCGACTGTTTACCCTCAAATAAATGTGTGAGCCGAATTATTATATCATCCTTCCGCAAAAGGCTAAAAACCATAAACAATAAAATGTTTTTTGTCGGCT
TTTCTTCGCACTTTTTATCTGTTTCTAGGCATTTTATGATAATTTTTTAAAGGTAAGCTT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
236 bp | 77 aa | 1 | 236 | + | No |
Chemistry : DDE
ORF sequence :
Blast result :
Comments
Homologies between the last 77 aa of the putative ISSf1 transposase and those of other transposable elements (45 % identity with that of IS12528) have been observed by Laine et al. (1994). ISSf1 is located just upstream (about 15 bp) of the catIII gene, and the promoter of this gene is probably provided by the right end of ISSf1.
References
1] Murray, I.A., Hawkins, A.R., Keyte, J.W., and Shaw, W.V. (1988) Biochem. J. 252, 173-179.
2] Laine, M.J., Zhang, Y.-P., and Metzler, M.C. (1994) Plasmid 32, 270-279.
2] Laine, M.J., Zhang, Y.-P., and Metzler, M.C. (1994) Plasmid 32, 270-279.