ISScr1

  • Family IS982
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s) ISSc1
Accession numberTranspositionOriginHost
AB042239 ND Streptococcus criceti
Streptococcus criceti
DNA section
IS Length : 962 bp

Ends


IR Length : 22/25

IRL : CCCCGTGGTGCTAGTTAATTTCAAAATACAATAAAAAGCCCAAAAGGACT
IRR : ACTCGTGGTGCTAGTTAATCTCAAAGTATCTCAGGTTGTGAGTAAGTATA

Insertion site


Left flankDirect repeatRight flankDR Length
GAAGCAAAATAGCTAAATATGAAAAAGA9
TATTAAAGCATAACCCTTTTAAATATCA8

DNA sequence

CCCCGTGGTGCTAGTTAATTTCAAAATACAATAAAAAGCCCAAAAGGACTATACTGTAAGTGCCTAAACAAACAGGAGGTTAGTCCAAATGAGCCACTTA
CAGTATACTGCTAAATCTCATCACTTACAATGGAATTTGAAGCAATTATCAAAAATATGCCATCAGCTCTATAGGGATTATTGTCCTTACTCTTTCAAAC
ATCGTCATAATATCAGTTTATCTAAGGTTTCAGATCAATCGCTATTGGTTTTGCTTATTTTACAAGCTGAGCTAGGTATTAAATCACAACGACACTTCTA
TCGTCTCTGTCACTTATTTCCTTGCGGCCAACTTCTTGAAAGAAGTCGTTTTAACCGACGAGCAAGACAGTTGGTTTGGTTAGTTCAAGTCATTAGACAA
GCCATGAATACTCAAATTTCTCCTGATACTATCGCTATTATAGATAGCTTTCCCTTACCACTTTGTCAACCTGTCCGTAACTGTAGAACACGTATTTTTA
ATGATTTGGCAGACATTGGTTACAATGCTTCTAAACATCTTTGGTTCTATGGATTCAAAGTACATATGCTGGTCACTTTATCAGGCTATATTCTGAATTA
CGTTGTGACCCCTGCCTCAGTACACGATATTAGGACGGTTGATGACTTACTAGAAAATTGCCGACAACCTTATATTTTAGCAGACCTAGGATATCTTAGC
AGGGAACTTAAAGACCATCTAGTTCAAAAAGGCTATCATCTATGGACTCCTTTGCGTCAAAACATGGCAGGAGCTAAACAACATAATCATTGGAAATTGA
TGGCTATGAGACGAACCATTGAGACACGCTTCTCCGAGCTTTGCGCTCTTTTTGACGTAGAACACACACTGACTAGAGGTTTAGCAGGACTGCAGTTAAG
ACTTGAGCAAATTATACTTACTCACAACCTGAGATACTTTGAGATTAACTAGCACCACGAGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
864 bp287 aa89952+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSHLQYTAKSHHLQWNLKQLSKICHQLYRDYCPYSFKHRHNISLSKVSDQSLLVLLILQAELGIKSQRHFYRLCHLFPCGQLLERSRFNRRARQLVWLVQ
VIRQAMNTQISPDTIAIIDSFPLPLCQPVRNCRTRIFNDLADIGYNASKHLWFYGFKVHMLVTLSGYILNYVVTPASVHDIRTVDDLLENCRQPYILADL
GYLSRELKDHLVQKGYHLWTPLRQNMAGAKQHNHWKLMAMRRTIETRFSELCALFDVEHTLTRGLAGLQLRLEQIILTHNLRYFEIN

 

Blast result :
Comments
This sequence was renamed by us. ISScr1 is 93% aa similar to ISSa4. The ends are not typical of an IS982 family member.
Additionnal accession number : AB182586.
References
1] Tamura,H. and Kato,H. (2000) Direct submission GenBank.