ISScr1
- Family IS982
- Group
Isoform Synonym(s) ISSc1
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB042239 | ND | Streptococcus criceti | Streptococcus criceti |
DNA section
IS Length : 962 bp
Ends
IR Length : 22/25
IRL : CCCCGTGGTGCTAGTTAATTTCAAAATACAATAAAAAGCCCAAAAGGACT
IRR : ACTCGTGGTGCTAGTTAATCTCAAAGTATCTCAGGTTGTGAGTAAGTATA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAAGCAAAA | TAGCTAAAT | ATGAAAAAGA | 9 |
TATTAAAGCA | TAACCCTT | TTAAATATCA | 8 |
DNA sequence
CCCCGTGGTGCTAGTTAATTTCAAAATACAATAAAAAGCCCAAAAGGACTATACTGTAAGTGCCTAAACAAACAGGAGGTTAGTCCAAATGAGCCACTTA
CAGTATACTGCTAAATCTCATCACTTACAATGGAATTTGAAGCAATTATCAAAAATATGCCATCAGCTCTATAGGGATTATTGTCCTTACTCTTTCAAAC
ATCGTCATAATATCAGTTTATCTAAGGTTTCAGATCAATCGCTATTGGTTTTGCTTATTTTACAAGCTGAGCTAGGTATTAAATCACAACGACACTTCTA
TCGTCTCTGTCACTTATTTCCTTGCGGCCAACTTCTTGAAAGAAGTCGTTTTAACCGACGAGCAAGACAGTTGGTTTGGTTAGTTCAAGTCATTAGACAA
GCCATGAATACTCAAATTTCTCCTGATACTATCGCTATTATAGATAGCTTTCCCTTACCACTTTGTCAACCTGTCCGTAACTGTAGAACACGTATTTTTA
ATGATTTGGCAGACATTGGTTACAATGCTTCTAAACATCTTTGGTTCTATGGATTCAAAGTACATATGCTGGTCACTTTATCAGGCTATATTCTGAATTA
CGTTGTGACCCCTGCCTCAGTACACGATATTAGGACGGTTGATGACTTACTAGAAAATTGCCGACAACCTTATATTTTAGCAGACCTAGGATATCTTAGC
AGGGAACTTAAAGACCATCTAGTTCAAAAAGGCTATCATCTATGGACTCCTTTGCGTCAAAACATGGCAGGAGCTAAACAACATAATCATTGGAAATTGA
TGGCTATGAGACGAACCATTGAGACACGCTTCTCCGAGCTTTGCGCTCTTTTTGACGTAGAACACACACTGACTAGAGGTTTAGCAGGACTGCAGTTAAG
ACTTGAGCAAATTATACTTACTCACAACCTGAGATACTTTGAGATTAACTAGCACCACGAGT
CAGTATACTGCTAAATCTCATCACTTACAATGGAATTTGAAGCAATTATCAAAAATATGCCATCAGCTCTATAGGGATTATTGTCCTTACTCTTTCAAAC
ATCGTCATAATATCAGTTTATCTAAGGTTTCAGATCAATCGCTATTGGTTTTGCTTATTTTACAAGCTGAGCTAGGTATTAAATCACAACGACACTTCTA
TCGTCTCTGTCACTTATTTCCTTGCGGCCAACTTCTTGAAAGAAGTCGTTTTAACCGACGAGCAAGACAGTTGGTTTGGTTAGTTCAAGTCATTAGACAA
GCCATGAATACTCAAATTTCTCCTGATACTATCGCTATTATAGATAGCTTTCCCTTACCACTTTGTCAACCTGTCCGTAACTGTAGAACACGTATTTTTA
ATGATTTGGCAGACATTGGTTACAATGCTTCTAAACATCTTTGGTTCTATGGATTCAAAGTACATATGCTGGTCACTTTATCAGGCTATATTCTGAATTA
CGTTGTGACCCCTGCCTCAGTACACGATATTAGGACGGTTGATGACTTACTAGAAAATTGCCGACAACCTTATATTTTAGCAGACCTAGGATATCTTAGC
AGGGAACTTAAAGACCATCTAGTTCAAAAAGGCTATCATCTATGGACTCCTTTGCGTCAAAACATGGCAGGAGCTAAACAACATAATCATTGGAAATTGA
TGGCTATGAGACGAACCATTGAGACACGCTTCTCCGAGCTTTGCGCTCTTTTTGACGTAGAACACACACTGACTAGAGGTTTAGCAGGACTGCAGTTAAG
ACTTGAGCAAATTATACTTACTCACAACCTGAGATACTTTGAGATTAACTAGCACCACGAGT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
864 bp | 287 aa | 89 | 952 | + | No |
Chemistry : DDE
ORF sequence :
MSHLQYTAKSHHLQWNLKQLSKICHQLYRDYCPYSFKHRHNISLSKVSDQSLLVLLILQAELGIKSQRHFYRLCHLFPCGQLLERSRFNRRARQLVWLVQ
VIRQAMNTQISPDTIAIIDSFPLPLCQPVRNCRTRIFNDLADIGYNASKHLWFYGFKVHMLVTLSGYILNYVVTPASVHDIRTVDDLLENCRQPYILADL
GYLSRELKDHLVQKGYHLWTPLRQNMAGAKQHNHWKLMAMRRTIETRFSELCALFDVEHTLTRGLAGLQLRLEQIILTHNLRYFEIN
VIRQAMNTQISPDTIAIIDSFPLPLCQPVRNCRTRIFNDLADIGYNASKHLWFYGFKVHMLVTLSGYILNYVVTPASVHDIRTVDDLLENCRQPYILADL
GYLSRELKDHLVQKGYHLWTPLRQNMAGAKQHNHWKLMAMRRTIETRFSELCALFDVEHTLTRGLAGLQLRLEQIILTHNLRYFEIN
Blast result :
Comments
This sequence was renamed by us. ISScr1 is 93% aa similar to ISSa4. The ends are not typical of an IS982 family member.
Additionnal accession number : AB182586.
Additionnal accession number : AB182586.
References
1] Tamura,H. and Kato,H. (2000) Direct submission GenBank.