ISSco2

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AL10949 ND Streptomyces coelicolor
Streptomyces coelicolor cosmid J11
DNA section
IS Length : 1964 bp

Ends


IR Length : 40/46

IRL : TGTCGGTGTGAGGTCTCAGGAGATGCTTGACCGTTTGTGCTCAGGACGTG
IRR : TGTCGGTGTGAGGTCTCAGGAGTTCCTTGACGGTTTATCGTCAGGAGATC

Insertion site


Left flankDirect repeatRight flankDR Length
TTGCGGTTCTGCTGATGTGATCA3

DNA sequence

TGTCGGTGTGAGGTCTCAGGAGATGCTTGACCGTTTGTGCTCAGGACGTGGGTGACACGTTCGGTTGGACGTCCGCCGTCTCCCGTCCCTCGGTGGGGCG
GAGGTGCTTCGGTCGGAGGTCGTGGATGTACAGCAACTGGCCGAGTACCGCTACCGGACCGTCCGCGAGGTGCTCGGCGGGTCACCGATCGGGGAGGTCG
CCGCCCGGTACGGCACCTCGCGTCAGACTCTGCACACCTGGCGCCGGAGGTTCGTGCTGGAGGGTATGCCAGGCCTGTTGGACCGATCCCGGCGCCCGCG
GAACAGCCCCGCGGGCCTGTCTGCCGAGATGGAGGCCGAGATCTGCGAGCTGCGCCGCCGGCATCTGCGGTGGGGTGCCCGCCGGATCGCCCATGAACTC
TCCGTCCGCGGGCTGGAGTCGGCGCCGTCGCGGGCCACGGTCCACCGGGTGCTGTCCCGCAACGGCCTGGTCCGCGCCCAGGAACAGCAGCATCCGCGCA
AGTACCGCCGGTGGCAGCGCGAGGCGCCCATGCACCTGTGGCAGATGGACCTGGTCGGCGGTGTGCCGCTGGCCGACGGACGGGAATGCAAGATGGTCAC
CGGCATCGATGACCACTCCCGGTTCGTCGTGATCGCTTCCGTCGTGGCCGTGCCCAGCGCCCGCGCCGTGTGCTCGGCCTTCGCAGCCGCGATGCGCCGC
TACGGCGTGCCCTTCGAAGTGCTGACGGACAACGGCAAGCAGTTCACCGGCCGGCACCAACGGCCGCAGCCGGTGGAAGTGCTCTTCGAGCGTATCTGCC
GGGAGAACGGCATCACCCAGCGGTTGACCAAGCCGCGGTCACCCACCACCACGGGCAAGATCGAACGTTCTCACCGCACCCTGCGCGAGGAGTTCCTCGA
TCACGTCGTGCCGTTCGAGTCGCTGGCTGCGGCCCAGCAAGCGATCGACGGCTGAGTACAGGCCTACAACCACCAGCGCCCGCACCAGGCCCTGAACACG
GCCACCCCCGATCAGCCTCTTCCGGCCCCACACTGCCGTCCGCCTCCGCGGTGATGATGAAAATCTTGAACAGACAGCGCCGGAGCCGGAGTTGTCCATC
GAGGTCGTCGAACCGCCCGCCCTGCCGCCGCAGGGCACTGCGGTCGAGTTCAAAGTGCGGGTGCCACCCAGCGGCGAGATCACCCTGGTCACGGGCAGGC
AGCGGGTGGGCATCCACCAAGCACTGGCCGGCAGGACGCTGACGGTCTGGGCGAACCACCGCAGCGTCCACTTCCTACTCGACGGGCACCCCGTCACCAC
GGTCCCGTCCCGGCTGCGACCGGAGGATCTCGCCTACCTGACCATGCGCTACGGCGCCCGTCCGGCCGGTCCCGAGCCCGCACCCGCCGCCCTGCCCAGG
GCCCGCAGCGGCACGGCCATCCTCGCCGCCGGTGAACCGGTCGAGGTCGACCGCAAGGTCCATCGTGACGGGCTCGTCCGCTTGGCCAGCGGCCGTTACC
AGGTCGGATTCGCCCTCGCCAGCCGCACGATCACTCTCCGCCTCGACGGGCACCTCATGCACGCCATCGCCGACGACGCCCTAACGGGGACGTGGCCCTG
CCCGGTTCCAGCCGACCGTCTGGGGCAGATCGAAGGGCCACGGACGGCGACGTCCCCTCTGCCGCCTCCGCCCCTGCCAGCCGGTGCCTTCCGGGCCCAG
CGAAAGGTGCATGCGAGCGGCCGCTTCATGATCAACGGTCAGTCCATCGAGCTCGGTCCGCGGCATGCGGGAAAGCTCGTCACAGTCGTCATCGAGGACA
CTCACTACTAGAGCCTGCACGGCGAGGACGAACTCGCCGTCCGGCCGCGCAAGAACCGCGAGCCGATCACCAGGCTCTACGTCAAAGGCGTGGGCACCCA
GCAGGACCGTCAAGGATCTCCTGACGATAAACCGTCAAGGAACTCCTGAGACCTCACACCGACA
Protein section
ORF number : 3

 

ORF 2
LengthBeginEndStrandFusion ORF
720 bp239 aa10921811+No
ORF function : Transposase
Description : Second part of the transposase

ORF sequence :

MSIEVVEPPALPPQGTAVEFKVRVPPSGEITLVTGRQRVGIHQALAGRTLTVWANHRSVHFLLDGHPVTTVPSRLRPEDLAYLTMRYGARPAGPEPAPAA
LPRARSGTAILAAGEPVEVDRKVHRDGLVRLASGRYQVGFALASRTITLRLDGHLMHAIADDALTGTWPCPVPADRLGQIEGPRTATSPLPPPPLPAGAF
RAQRKVHASGRFMINGQSIELGPRHAGKLVTVVIEDTHY

 

Blast result :
ORF 1
LengthBeginEndStrandFusion ORF
852 bp283 aa104955+No
ORF function : Transposase
Description :

ORF sequence :

MLRSEVVDVQQLAEYRYRTVREVLGGSPIGEVAARYGTSRQTLHTWRRRFVLEGMPGLLDRSRRPRNSPAGLSAEMEAEICELRRRHLRWGARRIAHELS
VRGLESAPSRATVHRVLSRNGLVRAQEQQHPRKYRRWQREAPMHLWQMDLVGGVPLADGRECKMVTGIDDHSRFVVIASVVAVPSARAVCSAFAAAMRRY
GVPFEVLTDNGKQFTGRHQRPQPVEVLFERICRENGITQRLTKPRSPTTTGKIERSHRTLREEFLDHVVPFESLAAAQQAIDG

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
1708 bp0 aa1041811+Yes
ORF function : Transposase
Chemistry : DDE

ORF sequence :

 

Blast result :
Comments
The transposase is 45% aa similar to IS1649, IS1652, ISSco1, ISA0963-3 and ISA0963-5, 41% to IS1121 and IS1122, 46% to ISVch1.

This element has been temporarily named ISSco2 .
References
1] Redenbach,M., Kieser,H.M., Denapaite,D., Eichner,A., Cullum,J., Kinashi,H. and Hopwood,D.A. (1996) Mol. Microbiol. 21 (1), 77-96.