ISSco2
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AL10949 | ND | Streptomyces coelicolor | Streptomyces coelicolor cosmid J11 |
DNA section
IS Length : 1964 bp
Ends
IR Length : 40/46
IRL : TGTCGGTGTGAGGTCTCAGGAGATGCTTGACCGTTTGTGCTCAGGACGTG
IRR : TGTCGGTGTGAGGTCTCAGGAGTTCCTTGACGGTTTATCGTCAGGAGATC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTGCGGTTCT | GCT | GATGTGATCA | 3 |
DNA sequence
TGTCGGTGTGAGGTCTCAGGAGATGCTTGACCGTTTGTGCTCAGGACGTGGGTGACACGTTCGGTTGGACGTCCGCCGTCTCCCGTCCCTCGGTGGGGCG
GAGGTGCTTCGGTCGGAGGTCGTGGATGTACAGCAACTGGCCGAGTACCGCTACCGGACCGTCCGCGAGGTGCTCGGCGGGTCACCGATCGGGGAGGTCG
CCGCCCGGTACGGCACCTCGCGTCAGACTCTGCACACCTGGCGCCGGAGGTTCGTGCTGGAGGGTATGCCAGGCCTGTTGGACCGATCCCGGCGCCCGCG
GAACAGCCCCGCGGGCCTGTCTGCCGAGATGGAGGCCGAGATCTGCGAGCTGCGCCGCCGGCATCTGCGGTGGGGTGCCCGCCGGATCGCCCATGAACTC
TCCGTCCGCGGGCTGGAGTCGGCGCCGTCGCGGGCCACGGTCCACCGGGTGCTGTCCCGCAACGGCCTGGTCCGCGCCCAGGAACAGCAGCATCCGCGCA
AGTACCGCCGGTGGCAGCGCGAGGCGCCCATGCACCTGTGGCAGATGGACCTGGTCGGCGGTGTGCCGCTGGCCGACGGACGGGAATGCAAGATGGTCAC
CGGCATCGATGACCACTCCCGGTTCGTCGTGATCGCTTCCGTCGTGGCCGTGCCCAGCGCCCGCGCCGTGTGCTCGGCCTTCGCAGCCGCGATGCGCCGC
TACGGCGTGCCCTTCGAAGTGCTGACGGACAACGGCAAGCAGTTCACCGGCCGGCACCAACGGCCGCAGCCGGTGGAAGTGCTCTTCGAGCGTATCTGCC
GGGAGAACGGCATCACCCAGCGGTTGACCAAGCCGCGGTCACCCACCACCACGGGCAAGATCGAACGTTCTCACCGCACCCTGCGCGAGGAGTTCCTCGA
TCACGTCGTGCCGTTCGAGTCGCTGGCTGCGGCCCAGCAAGCGATCGACGGCTGAGTACAGGCCTACAACCACCAGCGCCCGCACCAGGCCCTGAACACG
GCCACCCCCGATCAGCCTCTTCCGGCCCCACACTGCCGTCCGCCTCCGCGGTGATGATGAAAATCTTGAACAGACAGCGCCGGAGCCGGAGTTGTCCATC
GAGGTCGTCGAACCGCCCGCCCTGCCGCCGCAGGGCACTGCGGTCGAGTTCAAAGTGCGGGTGCCACCCAGCGGCGAGATCACCCTGGTCACGGGCAGGC
AGCGGGTGGGCATCCACCAAGCACTGGCCGGCAGGACGCTGACGGTCTGGGCGAACCACCGCAGCGTCCACTTCCTACTCGACGGGCACCCCGTCACCAC
GGTCCCGTCCCGGCTGCGACCGGAGGATCTCGCCTACCTGACCATGCGCTACGGCGCCCGTCCGGCCGGTCCCGAGCCCGCACCCGCCGCCCTGCCCAGG
GCCCGCAGCGGCACGGCCATCCTCGCCGCCGGTGAACCGGTCGAGGTCGACCGCAAGGTCCATCGTGACGGGCTCGTCCGCTTGGCCAGCGGCCGTTACC
AGGTCGGATTCGCCCTCGCCAGCCGCACGATCACTCTCCGCCTCGACGGGCACCTCATGCACGCCATCGCCGACGACGCCCTAACGGGGACGTGGCCCTG
CCCGGTTCCAGCCGACCGTCTGGGGCAGATCGAAGGGCCACGGACGGCGACGTCCCCTCTGCCGCCTCCGCCCCTGCCAGCCGGTGCCTTCCGGGCCCAG
CGAAAGGTGCATGCGAGCGGCCGCTTCATGATCAACGGTCAGTCCATCGAGCTCGGTCCGCGGCATGCGGGAAAGCTCGTCACAGTCGTCATCGAGGACA
CTCACTACTAGAGCCTGCACGGCGAGGACGAACTCGCCGTCCGGCCGCGCAAGAACCGCGAGCCGATCACCAGGCTCTACGTCAAAGGCGTGGGCACCCA
GCAGGACCGTCAAGGATCTCCTGACGATAAACCGTCAAGGAACTCCTGAGACCTCACACCGACA
GAGGTGCTTCGGTCGGAGGTCGTGGATGTACAGCAACTGGCCGAGTACCGCTACCGGACCGTCCGCGAGGTGCTCGGCGGGTCACCGATCGGGGAGGTCG
CCGCCCGGTACGGCACCTCGCGTCAGACTCTGCACACCTGGCGCCGGAGGTTCGTGCTGGAGGGTATGCCAGGCCTGTTGGACCGATCCCGGCGCCCGCG
GAACAGCCCCGCGGGCCTGTCTGCCGAGATGGAGGCCGAGATCTGCGAGCTGCGCCGCCGGCATCTGCGGTGGGGTGCCCGCCGGATCGCCCATGAACTC
TCCGTCCGCGGGCTGGAGTCGGCGCCGTCGCGGGCCACGGTCCACCGGGTGCTGTCCCGCAACGGCCTGGTCCGCGCCCAGGAACAGCAGCATCCGCGCA
AGTACCGCCGGTGGCAGCGCGAGGCGCCCATGCACCTGTGGCAGATGGACCTGGTCGGCGGTGTGCCGCTGGCCGACGGACGGGAATGCAAGATGGTCAC
CGGCATCGATGACCACTCCCGGTTCGTCGTGATCGCTTCCGTCGTGGCCGTGCCCAGCGCCCGCGCCGTGTGCTCGGCCTTCGCAGCCGCGATGCGCCGC
TACGGCGTGCCCTTCGAAGTGCTGACGGACAACGGCAAGCAGTTCACCGGCCGGCACCAACGGCCGCAGCCGGTGGAAGTGCTCTTCGAGCGTATCTGCC
GGGAGAACGGCATCACCCAGCGGTTGACCAAGCCGCGGTCACCCACCACCACGGGCAAGATCGAACGTTCTCACCGCACCCTGCGCGAGGAGTTCCTCGA
TCACGTCGTGCCGTTCGAGTCGCTGGCTGCGGCCCAGCAAGCGATCGACGGCTGAGTACAGGCCTACAACCACCAGCGCCCGCACCAGGCCCTGAACACG
GCCACCCCCGATCAGCCTCTTCCGGCCCCACACTGCCGTCCGCCTCCGCGGTGATGATGAAAATCTTGAACAGACAGCGCCGGAGCCGGAGTTGTCCATC
GAGGTCGTCGAACCGCCCGCCCTGCCGCCGCAGGGCACTGCGGTCGAGTTCAAAGTGCGGGTGCCACCCAGCGGCGAGATCACCCTGGTCACGGGCAGGC
AGCGGGTGGGCATCCACCAAGCACTGGCCGGCAGGACGCTGACGGTCTGGGCGAACCACCGCAGCGTCCACTTCCTACTCGACGGGCACCCCGTCACCAC
GGTCCCGTCCCGGCTGCGACCGGAGGATCTCGCCTACCTGACCATGCGCTACGGCGCCCGTCCGGCCGGTCCCGAGCCCGCACCCGCCGCCCTGCCCAGG
GCCCGCAGCGGCACGGCCATCCTCGCCGCCGGTGAACCGGTCGAGGTCGACCGCAAGGTCCATCGTGACGGGCTCGTCCGCTTGGCCAGCGGCCGTTACC
AGGTCGGATTCGCCCTCGCCAGCCGCACGATCACTCTCCGCCTCGACGGGCACCTCATGCACGCCATCGCCGACGACGCCCTAACGGGGACGTGGCCCTG
CCCGGTTCCAGCCGACCGTCTGGGGCAGATCGAAGGGCCACGGACGGCGACGTCCCCTCTGCCGCCTCCGCCCCTGCCAGCCGGTGCCTTCCGGGCCCAG
CGAAAGGTGCATGCGAGCGGCCGCTTCATGATCAACGGTCAGTCCATCGAGCTCGGTCCGCGGCATGCGGGAAAGCTCGTCACAGTCGTCATCGAGGACA
CTCACTACTAGAGCCTGCACGGCGAGGACGAACTCGCCGTCCGGCCGCGCAAGAACCGCGAGCCGATCACCAGGCTCTACGTCAAAGGCGTGGGCACCCA
GCAGGACCGTCAAGGATCTCCTGACGATAAACCGTCAAGGAACTCCTGAGACCTCACACCGACA
Protein section
ORF number : 3
ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
720 bp | 239 aa | 1092 | 1811 | + | No |
Description : Second part of the transposase
ORF sequence :
MSIEVVEPPALPPQGTAVEFKVRVPPSGEITLVTGRQRVGIHQALAGRTLTVWANHRSVHFLLDGHPVTTVPSRLRPEDLAYLTMRYGARPAGPEPAPAA
LPRARSGTAILAAGEPVEVDRKVHRDGLVRLASGRYQVGFALASRTITLRLDGHLMHAIADDALTGTWPCPVPADRLGQIEGPRTATSPLPPPPLPAGAF
RAQRKVHASGRFMINGQSIELGPRHAGKLVTVVIEDTHY
LPRARSGTAILAAGEPVEVDRKVHRDGLVRLASGRYQVGFALASRTITLRLDGHLMHAIADDALTGTWPCPVPADRLGQIEGPRTATSPLPPPPLPAGAF
RAQRKVHASGRFMINGQSIELGPRHAGKLVTVVIEDTHY
Blast result :ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
852 bp | 283 aa | 104 | 955 | + | No |
Description :
ORF sequence :
MLRSEVVDVQQLAEYRYRTVREVLGGSPIGEVAARYGTSRQTLHTWRRRFVLEGMPGLLDRSRRPRNSPAGLSAEMEAEICELRRRHLRWGARRIAHELS
VRGLESAPSRATVHRVLSRNGLVRAQEQQHPRKYRRWQREAPMHLWQMDLVGGVPLADGRECKMVTGIDDHSRFVVIASVVAVPSARAVCSAFAAAMRRY
GVPFEVLTDNGKQFTGRHQRPQPVEVLFERICRENGITQRLTKPRSPTTTGKIERSHRTLREEFLDHVVPFESLAAAQQAIDG
VRGLESAPSRATVHRVLSRNGLVRAQEQQHPRKYRRWQREAPMHLWQMDLVGGVPLADGRECKMVTGIDDHSRFVVIASVVAVPSARAVCSAFAAAMRRY
GVPFEVLTDNGKQFTGRHQRPQPVEVLFERICRENGITQRLTKPRSPTTTGKIERSHRTLREEFLDHVVPFESLAAAQQAIDG
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1708 bp | 0 aa | 104 | 1811 | + | Yes |
Chemistry : DDE
ORF sequence :
Blast result :
Comments
The transposase is 45% aa similar to IS1649, IS1652, ISSco1, ISA0963-3 and ISA0963-5, 41% to IS1121 and IS1122, 46% to ISVch1.
This element has been temporarily named ISSco2 .
This element has been temporarily named ISSco2 .
References
1] Redenbach,M., Kieser,H.M., Denapaite,D., Eichner,A., Cullum,J., Kinashi,H. and Hopwood,D.A. (1996) Mol. Microbiol. 21 (1), 77-96.