ISS1W
- Family IS6
- Group
Isoform Synonym(s) ORF-W2
Accession number | Transposition | Origin | Host |
---|---|---|---|
M37396 | ND | Lactococcus lactis | Lactobacillus sake L45 Lactococcus lactis subsp. lactis MG1363 Lactococcus lactis subsp. cremoris Wg2 plasmid pWV05 |
DNA section
IS Length : 809 bp
Ends
IR Length : 17/18
IRL : GGTTCTGTTGCAAAGTTTTAAATCTACTATCAAATAAGGTAGAATAATAG
IRR : GGTTCTGTTGCAAAGTCTGAAACTCAAAAACACTATCTCTGACCAACCGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGTTCTGTTGCAAAGTTTTAAATCTACTATCAAATAAGGTAGAATAATAGAAAAAGATAGCAGGAGGAATGACGATGAATCATTTTAAAGGAAAGCAATT
TCAGCAGGATGTGATTATTGTAGCCGTGGGCTACTATCTTCGTTATAACCTTAGCTATCGTGAAGTTCAAGAAATCTTATATGATCGTGGCATTAACGTT
TCTCATACGAAGATTTATCGTTGGGTGCAAGAATATGGCAAACTACTCTATCAAATTTGGAAAAAGAAAAATAAAAAATCCTTTTATTCATGGAAAATGG
ATGAAACGTACATCAAAATTAAAGGAAAATGGCATTATTTGTATCGAGCCATCGATGCAGATGGTTTAACCTTGGATATTTGGTTACGTAAAAAACGGGA
CACACAAGCAGCCTATGCTTTTCTTAAGCGGTTAGTGAAGCAGTTTGATGAACCGAAGGTTGTAGTCACAGATAAAGCCCCCTCTATTACAAGTGCCTTT
AAGAAACTAAAAGAATACGGCTTTTATCAAGGGACAGAACATCGTACCATTAAATACCTGAATAATTTGATTGAACAAGACCATCGTCCAGTAAAGAGAC
GGAATAAATTTTATCGAAGTCTCCGGACTGCCTCATCCACGATTAAGGGGATGGAGACCATTCGAGGAATATATAAAAAGAACCGAAGAAATGGAACACT
CTTCGGCTTTTCAGTTTCTACTGAAATCAAAATATTAATGGGAATACCTGCTTAGATTGACGGTTGGTCAGAGATAGTGTTTTTGAGTTTCAGACTTTGC
AACAGAACC
TCAGCAGGATGTGATTATTGTAGCCGTGGGCTACTATCTTCGTTATAACCTTAGCTATCGTGAAGTTCAAGAAATCTTATATGATCGTGGCATTAACGTT
TCTCATACGAAGATTTATCGTTGGGTGCAAGAATATGGCAAACTACTCTATCAAATTTGGAAAAAGAAAAATAAAAAATCCTTTTATTCATGGAAAATGG
ATGAAACGTACATCAAAATTAAAGGAAAATGGCATTATTTGTATCGAGCCATCGATGCAGATGGTTTAACCTTGGATATTTGGTTACGTAAAAAACGGGA
CACACAAGCAGCCTATGCTTTTCTTAAGCGGTTAGTGAAGCAGTTTGATGAACCGAAGGTTGTAGTCACAGATAAAGCCCCCTCTATTACAAGTGCCTTT
AAGAAACTAAAAGAATACGGCTTTTATCAAGGGACAGAACATCGTACCATTAAATACCTGAATAATTTGATTGAACAAGACCATCGTCCAGTAAAGAGAC
GGAATAAATTTTATCGAAGTCTCCGGACTGCCTCATCCACGATTAAGGGGATGGAGACCATTCGAGGAATATATAAAAAGAACCGAAGAAATGGAACACT
CTTCGGCTTTTCAGTTTCTACTGAAATCAAAATATTAATGGGAATACCTGCTTAGATTGACGGTTGGTCAGAGATAGTGTTTTTGAGTTTCAGACTTTGC
AACAGAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
681 bp | 226 aa | 75 | 755 | + | No |
Chemistry : DDE
ORF sequence :
MNHFKGKQFQQDVIIVAVGYYLRYNLSYREVQEILYDRGINVSHTKIYRWVQEYGKLLYQIWKKKNKKSFYSWKMDETYIKIKGKWHYLYRAIDADGLTL
DIWLRKKRDTQAAYAFLKRLVKQFDEPKVVVTDKAPSITSAFKKLKEYGFYQGTEHRTIKYLNNLIEQDHRPVKRRNKFYRSLRTASSTIKGMETIRGIY
KKNRRNGTLFGFSVSTEIKILMGIPA
DIWLRKKRDTQAAYAFLKRLVKQFDEPKVVVTDKAPSITSAFKKLKEYGFYQGTEHRTIKYLNNLIEQDHRPVKRRNKFYRSLRTASSTIKGMETIRGIY
KKNRRNGTLFGFSVSTEIKILMGIPA
Blast result :
Comments
ISS1W is located downstream of the proteinase maturation gene (prtM). ISS1W and ISS1N ORFs are 86 and 93 % identical to that of ISS1S, respectively. Note that a 176-bp partial ISS1W homologue has been found in Lactobacillus sake L45, in the vicinity of a gene cluster involved in the biosynthesis of the lantibiotic lactocin S (Skaugen et al., 1997, Accession Number Z54312).
References
1] Haandrikman, A.J., Van Leeuwen, C., Kok, J., Vos, P., de Vos, W.M., and Venema, G. (1990) Appl. Environ. Microbiol. 56, 1890-1896.
2] Skaugen, M., Abildgaard, C.I., and Nes, I.F. (1997) Mol. Gen. Genet. 253, 674-686.
2] Skaugen, M., Abildgaard, C.I., and Nes, I.F. (1997) Mol. Gen. Genet. 253, 674-686.