ISS1CH
- Family IS6
- Group
Isoform ISS1NSynonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
X60456 | ND | Lactococcus lactis | Lactococcus lactis subsp. lactis CNRZ270 |
DNA section
IS Length : 810 bp
Ends
IR Length : 18
IRL : GGTTCTGTTGCGAAGTTTGAAAAATCAAAAACCGATCTCTCTGAACTCCA
IRR : CCGGTTTGTTGCAAAGTTTTCCAAAAAATCTATTTTAGTGTAAAATTGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGTTCTGTTGCGAAGTTTGAAAAATCAAAAACCGATCTCTCTGAACTCCAAATTCTTAGGATGTTATTCCCATTAATACCTTGATTTCAGTAGACATCGA
AAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACGGAGACTTTGATAA
AATTTATTTCATCGTTTAATAGGTCGATGGTCTTGTTCTATTAAATTGTTAAGATACTTCACAGTTCGGTGCTCTGTCTTAGTATATAAACCCACACTCT
GTAACTTTCTAAAAGCGGAGCCAAGAGAAGGTGCTTTATCGGTCACAATTGCTTTCGGCTCACCAAACTGTTTATGGAGTCGTTTTAAGAAAGCATAGGC
TGCTTGCGTCTCCCGTTTCTTTCGTAACCAGATATCTAAGGTTAAGCCGTCCGCATCAATTGCACGATAAAGATAATGCCCACGTCCCTTAATTTTGATA
TAGGTTTCGTCCATTTTCCATGAATAGAAGGATTGTCTATTTTTCTTCTTCCAAAGATAATAGAGGACTTTGCTGTACTCTTGCACCCAACGATAAATCG
TAGTATGACAAACATTTATTCCACGATCATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGAC
GTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCA
ACAAACCGG
AAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACGGAGACTTTGATAA
AATTTATTTCATCGTTTAATAGGTCGATGGTCTTGTTCTATTAAATTGTTAAGATACTTCACAGTTCGGTGCTCTGTCTTAGTATATAAACCCACACTCT
GTAACTTTCTAAAAGCGGAGCCAAGAGAAGGTGCTTTATCGGTCACAATTGCTTTCGGCTCACCAAACTGTTTATGGAGTCGTTTTAAGAAAGCATAGGC
TGCTTGCGTCTCCCGTTTCTTTCGTAACCAGATATCTAAGGTTAAGCCGTCCGCATCAATTGCACGATAAAGATAATGCCCACGTCCCTTAATTTTGATA
TAGGTTTCGTCCATTTTCCATGAATAGAAGGATTGTCTATTTTTCTTCTTCCAAAGATAATAGAGGACTTTGCTGTACTCTTGCACCCAACGATAAATCG
TAGTATGACAAACATTTATTCCACGATCATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGAC
GTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCA
ACAAACCGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
528 bp | 175 aa | 74 | 601 | + | No |
Chemistry : DDE
ORF sequence :
MNHFKGKQFKKDVIIVAVGYYLRYNLSYREVQELLYDRGINVCHTTIYRWVQEYSKVLYYLWKKKNRQSFYSWKMDETYIKIKGRGHYLYRAIDADGLTL
DIWLRKKRETQAAYAFLKRLHKQFGEPKAIVTDKAPSLGSAFRKLQSVGLYTKTEHRTVKYLNNLIEQDHRPIKR
DIWLRKKRETQAAYAFLKRLHKQFGEPKAIVTDKAPSLGSAFRKLQSVGLYTKTEHRTVKYLNNLIEQDHRPIKR
Blast result :
Comments
ISS1CH ORF is 97.2 % identical to that of ISS1N. Maybe a sequencing error: the ORF is only 175-aa long vs the 226-aa generally found for the other members of the family.
References
1] Huang, D.C., Novel, M., Huang, X.F., and Novel, G. (1992) Gene 118, 39-46.