ISRso8
- Family IS3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003295 | ND | Ralstonia solanacearum | Ralstonia solanacearum |
DNA section
IS Length : 1287 bp
Ends
IR Length : 24/29
IRL : TGACCTTCCCTCTGTTTTTCGCCTTCCAGAGGCCCTGGGTTATGCAGCCG
IRR : TGAGCTTCCCTCGAAATTTCGCCTTCCAGCAGGTCGCACGTAAACTCGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGCCTCTTCA | TAC | TTCGCCATGA | 3 |
DNA sequence
TGACCTTCCCTCTGTTTTTCGCCTTCCAGAGGCCCTGGGTTATGCAGCCGTTTCCTTCACCTGTTGAGCCTTGAGCCAGTCCTGCATGAACTGAGCTGGC
GAGACAAAGCCGAGCGACGAATGACGGCGACTGCGGTTATAAAACACTTCGATGTATTCGAACAGGTCCGCCGCAGCCTCCTGATGCGTCCGGTAGCGCG
TGGCATGCACCCGTTCGTTCTTCAGGCTGTTGAAGAAGCTCTCAGTCGGTGCGTTGTCCCAACAATTTCCCTTGCGGCTCATCGAACAGCGCATGCCGTA
TTCGGCCAGCTTGCGCTGGAATTCGTGGCTCGCGTACTGGCTGCCACGGTCCGAATGATGCAGCGCGCCGGGCGCGGGCTTGCGGCGGAACCACGCCATC
GTCAGTGCGTCGGTCACCAGGTCTGCCGTCATGCGCGGCTTGATGGACCAACCCATGACTTCCCGATTGAACAGGTCCAGCACCACGGCCAGATACAGCC
AGCCCTCGTCGGTCCAGATGTATGTGATGTCCGAACTGAACACCTGATTCGGCTCGGCCGGCGTGAACTCGCGGTTCAGCAGGTTCGGCGCGACCGGCAG
CTTGTGCCTGGAATCGGTCGTGACCCGATAACGGCGCTTGTGGCGTGCCCGGATGCCGTTCTGGCTCATCAGGCGTTCCACGCGCGCTTTGCTGGCCGGG
AACCCGCGTGCGCGAATCTCTTCGGTCATGCGCGGCGAGCCATAGGCGCCCTTGAACTGCGCATGGATGGCCCGAATCAATGTGAGCAATTGCGTGTCGG
TGAGCCGCTTGCGCTCGGGCGTGCCGCCTCGCCTCCAGGCACGATAGCCGTTGACGCTGACCGAGAGGACCCCGCACAGCGCCGACAGCGGATAGTGCCG
ACACTGCTGGTCAATCCAGGCGTACTTCACAGCAGGTCTTTCGCGAAGTACGCCGCCGCCTTTTTTGCGATTTCGAGTTCCATTTGCAGCCGCTTGTTCT
CGGCGCGCAGGCGCGAGAGCTCCATCTGCTCCGGCGTGACGACCTTCGCGCCGGCGCCGCCCAGCTTGCCAGCCTGCTCGGCCTTCATCCAGTTGCGCAG
CGTCTGCTCCGAGACGCTCAACTCGCGGGCCACCGCACCCACGCCTTGCCCGTCTTTGACTCGTTGTACGGCTGCCGCCTTGAACTCCGCCGTGTATGAC
TGTTTCGGTACCTTGAACATTTCTTGCCTTCCTTGGGGTCGAGTTTACGTGCGACCTGCTGGAAGGCGAAATTTCGAGGGAAGCTCA
GAGACAAAGCCGAGCGACGAATGACGGCGACTGCGGTTATAAAACACTTCGATGTATTCGAACAGGTCCGCCGCAGCCTCCTGATGCGTCCGGTAGCGCG
TGGCATGCACCCGTTCGTTCTTCAGGCTGTTGAAGAAGCTCTCAGTCGGTGCGTTGTCCCAACAATTTCCCTTGCGGCTCATCGAACAGCGCATGCCGTA
TTCGGCCAGCTTGCGCTGGAATTCGTGGCTCGCGTACTGGCTGCCACGGTCCGAATGATGCAGCGCGCCGGGCGCGGGCTTGCGGCGGAACCACGCCATC
GTCAGTGCGTCGGTCACCAGGTCTGCCGTCATGCGCGGCTTGATGGACCAACCCATGACTTCCCGATTGAACAGGTCCAGCACCACGGCCAGATACAGCC
AGCCCTCGTCGGTCCAGATGTATGTGATGTCCGAACTGAACACCTGATTCGGCTCGGCCGGCGTGAACTCGCGGTTCAGCAGGTTCGGCGCGACCGGCAG
CTTGTGCCTGGAATCGGTCGTGACCCGATAACGGCGCTTGTGGCGTGCCCGGATGCCGTTCTGGCTCATCAGGCGTTCCACGCGCGCTTTGCTGGCCGGG
AACCCGCGTGCGCGAATCTCTTCGGTCATGCGCGGCGAGCCATAGGCGCCCTTGAACTGCGCATGGATGGCCCGAATCAATGTGAGCAATTGCGTGTCGG
TGAGCCGCTTGCGCTCGGGCGTGCCGCCTCGCCTCCAGGCACGATAGCCGTTGACGCTGACCGAGAGGACCCCGCACAGCGCCGACAGCGGATAGTGCCG
ACACTGCTGGTCAATCCAGGCGTACTTCACAGCAGGTCTTTCGCGAAGTACGCCGCCGCCTTTTTTGCGATTTCGAGTTCCATTTGCAGCCGCTTGTTCT
CGGCGCGCAGGCGCGAGAGCTCCATCTGCTCCGGCGTGACGACCTTCGCGCCGGCGCCGCCCAGCTTGCCAGCCTGCTCGGCCTTCATCCAGTTGCGCAG
CGTCTGCTCCGAGACGCTCAACTCGCGGGCCACCGCACCCACGCCTTGCCCGTCTTTGACTCGTTGTACGGCTGCCGCCTTGAACTCCGCCGTGTATGAC
TGTTTCGGTACCTTGAACATTTCTTGCCTTCCTTGGGGTCGAGTTTACGTGCGACCTGCTGGAAGGCGAAATTTCGAGGGAAGCTCA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
294 bp | 97 aa | 68 | 361 | + | No |
Description :
ORF sequence :
MFKVPKQSYTAEFKAAAVQRVKDGQGVGAVARELSVSEQTLRNWMKAEQAGKLGGAGAKVVTPEQMELSRLRAENKRLQMELEIAKKAAAYFAKDLL
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
891 bp | 296 aa | 358 | 1248 | + | No |
Description :
ORF sequence :
MKYAWIDQQCRHYPLSALCGVLSVSVNGYRAWRRGGTPERKRLTDTQLLTLIRAIHAQFKGAYGSPRMTEEIRARGFPASKARVERLMSQNGIRARHKRR
YRVTTDSRHKLPVAPNLLNREFTPAEPNQVFSSDITYIWTDEGWLYLAVVLDLFNREVMGWSIKPRMTADLVTDALTMAWFRRKPAPGALHHSDRGSQYA
SHEFQRKLAEYGMRCSMSRKGNCWDNAPTESFFNSLKNERVHATRYRTHQEAAADLFEYIEVFYNRSRRHSSLGFVSPAQFMQDWLKAQQVKETAA
YRVTTDSRHKLPVAPNLLNREFTPAEPNQVFSSDITYIWTDEGWLYLAVVLDLFNREVMGWSIKPRMTADLVTDALTMAWFRRKPAPGALHHSDRGSQYA
SHEFQRKLAEYGMRCSMSRKGNCWDNAPTESFFNSLKNERVHATRYRTHQEAAADLFEYIEVFYNRSRRHSSLGFVSPAQFMQDWLKAQQVKETAA
Blast result :
Comments
There are 4 copies of ISRso8 (3 on chromosome and 1 on megaplasmid).
References
1] Salanoubat,M., Genin,S., Artiguenave,F., Gouzy,J., Mangenot,S.,Arlat,M., Billault,A., Brottier,P., Camus,J.C., Cattolico,L., Chandler,M., Choisne,N., Claudel-Renard,C., Cunnac,S., Demange,N., Gaspin,C., Lavie,M., Moisan,A., Robert,C., Saurin,W., Schiex,T., Siguier,P., Thebault,P., Whalen,M., Wincker,P., Levy,M., Weissenbach,J. and Boucher,C.A. (2002) Nature 415 (6871), 497-502