ISRso8

  • Family IS3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003295 ND Ralstonia solanacearum
Ralstonia solanacearum
DNA section
IS Length : 1287 bp

Ends


IR Length : 24/29

IRL : TGACCTTCCCTCTGTTTTTCGCCTTCCAGAGGCCCTGGGTTATGCAGCCG
IRR : TGAGCTTCCCTCGAAATTTCGCCTTCCAGCAGGTCGCACGTAAACTCGAC

Insertion site


Left flankDirect repeatRight flankDR Length
CGCCTCTTCATACTTCGCCATGA3

DNA sequence

TGACCTTCCCTCTGTTTTTCGCCTTCCAGAGGCCCTGGGTTATGCAGCCGTTTCCTTCACCTGTTGAGCCTTGAGCCAGTCCTGCATGAACTGAGCTGGC
GAGACAAAGCCGAGCGACGAATGACGGCGACTGCGGTTATAAAACACTTCGATGTATTCGAACAGGTCCGCCGCAGCCTCCTGATGCGTCCGGTAGCGCG
TGGCATGCACCCGTTCGTTCTTCAGGCTGTTGAAGAAGCTCTCAGTCGGTGCGTTGTCCCAACAATTTCCCTTGCGGCTCATCGAACAGCGCATGCCGTA
TTCGGCCAGCTTGCGCTGGAATTCGTGGCTCGCGTACTGGCTGCCACGGTCCGAATGATGCAGCGCGCCGGGCGCGGGCTTGCGGCGGAACCACGCCATC
GTCAGTGCGTCGGTCACCAGGTCTGCCGTCATGCGCGGCTTGATGGACCAACCCATGACTTCCCGATTGAACAGGTCCAGCACCACGGCCAGATACAGCC
AGCCCTCGTCGGTCCAGATGTATGTGATGTCCGAACTGAACACCTGATTCGGCTCGGCCGGCGTGAACTCGCGGTTCAGCAGGTTCGGCGCGACCGGCAG
CTTGTGCCTGGAATCGGTCGTGACCCGATAACGGCGCTTGTGGCGTGCCCGGATGCCGTTCTGGCTCATCAGGCGTTCCACGCGCGCTTTGCTGGCCGGG
AACCCGCGTGCGCGAATCTCTTCGGTCATGCGCGGCGAGCCATAGGCGCCCTTGAACTGCGCATGGATGGCCCGAATCAATGTGAGCAATTGCGTGTCGG
TGAGCCGCTTGCGCTCGGGCGTGCCGCCTCGCCTCCAGGCACGATAGCCGTTGACGCTGACCGAGAGGACCCCGCACAGCGCCGACAGCGGATAGTGCCG
ACACTGCTGGTCAATCCAGGCGTACTTCACAGCAGGTCTTTCGCGAAGTACGCCGCCGCCTTTTTTGCGATTTCGAGTTCCATTTGCAGCCGCTTGTTCT
CGGCGCGCAGGCGCGAGAGCTCCATCTGCTCCGGCGTGACGACCTTCGCGCCGGCGCCGCCCAGCTTGCCAGCCTGCTCGGCCTTCATCCAGTTGCGCAG
CGTCTGCTCCGAGACGCTCAACTCGCGGGCCACCGCACCCACGCCTTGCCCGTCTTTGACTCGTTGTACGGCTGCCGCCTTGAACTCCGCCGTGTATGAC
TGTTTCGGTACCTTGAACATTTCTTGCCTTCCTTGGGGTCGAGTTTACGTGCGACCTGCTGGAAGGCGAAATTTCGAGGGAAGCTCA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
294 bp97 aa68361+No
ORF function : Transposase
Description :

ORF sequence :

MFKVPKQSYTAEFKAAAVQRVKDGQGVGAVARELSVSEQTLRNWMKAEQAGKLGGAGAKVVTPEQMELSRLRAENKRLQMELEIAKKAAAYFAKDLL

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
891 bp296 aa3581248+No
ORF function : Transposase
Description :

ORF sequence :

MKYAWIDQQCRHYPLSALCGVLSVSVNGYRAWRRGGTPERKRLTDTQLLTLIRAIHAQFKGAYGSPRMTEEIRARGFPASKARVERLMSQNGIRARHKRR
YRVTTDSRHKLPVAPNLLNREFTPAEPNQVFSSDITYIWTDEGWLYLAVVLDLFNREVMGWSIKPRMTADLVTDALTMAWFRRKPAPGALHHSDRGSQYA
SHEFQRKLAEYGMRCSMSRKGNCWDNAPTESFFNSLKNERVHATRYRTHQEAAADLFEYIEVFYNRSRRHSSLGFVSPAQFMQDWLKAQQVKETAA

 

Blast result :
Comments
There are 4 copies of ISRso8 (3 on chromosome and 1 on megaplasmid).
References
1] Salanoubat,M., Genin,S., Artiguenave,F., Gouzy,J., Mangenot,S.,Arlat,M., Billault,A., Brottier,P., Camus,J.C., Cattolico,L., Chandler,M., Choisne,N., Claudel-Renard,C., Cunnac,S., Demange,N., Gaspin,C., Lavie,M., Moisan,A., Robert,C., Saurin,W., Schiex,T., Siguier,P., Thebault,P., Whalen,M., Wincker,P., Levy,M., Weissenbach,J. and Boucher,C.A. (2002) Nature 415 (6871), 497-502